NO01G04790, NO01G04790 (gene) Nannochloropsis oceanica

Overview
NameNO01G04790
Unique NameNO01G04790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4641
Alignment locationchr1:1267247..1271887 -

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Properties
Property NameValue
DescriptionSANT/Myb domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1267247..1271887 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017930Myb_dom
IPR001005SANT/Myb
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: EJK60893.1 (hypothetical protein THAOC_18691 [Thalassiosira oceanica])

HSP 1 Score: 79.3 bits (194), Expect = 5.400e-11
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:  127 ESPGRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLG 185
            E+ GRW   EH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KA++ G
Sbjct:  308 ENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKARQSG 365
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: CCI44913.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 79.3 bits (194), Expect = 5.400e-11
Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:  130 GRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKA 181
            GRW++ EH LFL GL++YGKSWKKIS++V TRT+VQIRTHAQKYL K ++A
Sbjct:  126 GRWSKREHELFLHGLKLYGKSWKKISKLVSTRTLVQIRTHAQKYLQKQQRA 176
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: CCA19758.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 78.6 bits (192), Expect = 9.200e-11
Identity = 35/51 (68.63%), Postives = 46/51 (90.20%), Query Frame = 0 
Query:  130 GRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKA 181
            GRW++ EH LFL+GL++YGKSWKKI+++V TRT+VQIRTHAQKYL K ++A
Sbjct:  121 GRWSKREHELFLQGLKLYGKSWKKIAKLVSTRTLVQIRTHAQKYLQKQQRA 171
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: XP_008863052.1 (hypothetical protein H310_01647 [Aphanomyces invadans] >ETW09247.1 hypothetical protein H310_01647 [Aphanomyces invadans])

HSP 1 Score: 77.8 bits (190), Expect = 1.600e-10
Identity = 37/59 (62.71%), Postives = 44/59 (74.58%), Query Frame = 0 
Query:  127 ESPGRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGL 186
            ++ GRW + EH LFL GL  YGKSWK IS +V TRT+VQIRTHAQKYL K  ++ K GL
Sbjct:  146 QTTGRWTKQEHELFLEGLRRYGKSWKSISNLVVTRTLVQIRTHAQKYLQKQSRSSKAGL 204
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: OEU20545.1 (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 77.0 bits (188), Expect = 2.700e-10
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 0 
Query:  131 RWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLG 185
            RW   EH LFL+GLE++GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KAK+ G
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: GAY05191.1 (Hypothetical protein PINS_013005 [Pythium insidiosum])

HSP 1 Score: 77.0 bits (188), Expect = 2.700e-10
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 0 
Query:  130 GRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKA 181
            GRW + EH LFL GL++YGKSWKKIS +V TRT+VQIRTHAQKYL K  K+
Sbjct:  120 GRWTKREHELFLEGLKLYGKSWKKISSLVVTRTLVQIRTHAQKYLQKQNKS 170
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: AGB13670.1 (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 76.6 bits (187), Expect = 3.500e-10
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0 
Query:  129 PGRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTG----TVMMNGKAITSSTK----GGR 205
            PGRW + EHL FLRGL +YG+ W KI ++V TR+  Q+R+HAQKY  +I +AK+ G  G      MM+GK +  S +    GGR
Sbjct:   71 PGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRMFKSAQKRGSGGR 154
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: XP_012196173.1 (hypothetical protein SPRG_02234 [Saprolegnia parasitica CBS 223.65] >KDO33427.1 hypothetical protein SPRG_02234 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 75.5 bits (184), Expect = 7.800e-10
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:  130 GRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKA 181
            GRW + EH LFL GLE YGKSWK IS +V TRT+VQIRTHAQKYL K  KA
Sbjct:   90 GRWTKKEHELFLEGLERYGKSWKHISNLVVTRTLVQIRTHAQKYLQKQNKA 140
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: EWM30605.1 (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 75.1 bits (183), Expect = 1.000e-9
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 0 
Query:  130 GRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNG-KAITSSTKGG 204
            G W + EH LFLR  E YGKSWKK+S+I+ TRT  QIRTHAQKY  K+ + ++ G  G   M+G + +T +  GG
Sbjct:  210 GHWTDEEHELFLRCWEQYGKSWKKLSEIIGTRTNEQIRTHAQKYFAKLRELRERGYEGAYYMDGTRHLTKTFLGG 284
[Close]
BLAST of NO01G04790 vs. NCBI_GenBank
Match: GAX25258.1 (hypothetical protein FisN_5Lh340 [Fistulifera solaris])

HSP 1 Score: 75.1 bits (183), Expect = 1.000e-9
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:  127 ESPGRWNEAEHLLFLRGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGG 204
            E  GRW +AEH  FL GL++YGK WKK++  VKTRTVVQ RTHAQKY  K+ K  +      V      ++  TK G
Sbjct:  116 EHTGRWTKAEHEAFLAGLKMYGKEWKKVAARVKTRTVVQTRTHAQKYFQKLHKTSEDSGNDYVSRADLGVSGETKRG 192
The following BLAST results are available for this feature:
BLAST of NO01G04790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EJK60893.15.400e-1162.07hypothetical protein THAOC_18691 [Thalassiosira oc... [more]
CCI44913.15.400e-1170.59unnamed protein product [Albugo candida][more]
CCA19758.19.200e-1168.63conserved hypothetical protein [Albugo laibachii N... [more]
XP_008863052.11.600e-1062.71hypothetical protein H310_01647 [Aphanomyces invad... [more]
OEU20545.12.700e-1064.81hypothetical protein FRACYDRAFT_165241, partial [F... [more]
GAY05191.12.700e-1070.59Hypothetical protein PINS_013005 [Pythium insidios... [more]
AGB13670.13.500e-1047.62MYB360 [Nannochloropsis sp. YJH-2012][more]
XP_012196173.17.800e-1072.55hypothetical protein SPRG_02234 [Saprolegnia paras... [more]
EWM30605.11.000e-950.67SANT/Myb domain protein [Nannochloropsis gaditana][more]
GAX25258.11.000e-949.35hypothetical protein FisN_5Lh340 [Fistulifera sola... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007786NSK007786Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04790.1NO01G04790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|243818gene_504Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g29gene1220Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04790.1NO01G04790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04790 ID=NO01G04790|Name=NO01G04790|organism=Nannochloropsis oceanica|type=gene|length=4641bp
CTTTCGCCAAGGCCACGTCGTGCTCCTTGCCTTGTCATGCCTCTTCACTC
TTTTCTATTCGCTTTTGGTTTCCTGAGATCGATTCAAGACTCGGATACAT
CAGTTAAGCCTTTGGTCACCGCCAATAAGTGTTGAGTGGTGTAGAAGCGC
GCCTTTCCAACCTCTTTTTGCCGTCACCTGGTCCTCGTTGCTGCCTCGTT
GATGTTGATGCCCAAGCCCGATGTAGACGTGTACGCTTGCACTGAGCGCC
TCTTCCTTCCTTCACATCCCCTACCCCAATTTGTTTCTTGCCCTGGTGTC
ATTCTTGCGACCGAGACTTCCCATAAATGTTGTTTACAAACTATTTGGCC
AGACAACTTTCTGATTGGGTGCGTGTGACCGGCTGTGTGCGCCTTGCCTT
CGAAGATTGACCCCCCTCTCCATCCTCTCCTTCACAGACAAGAGGCCAAG
CCGACGTGCAACGAACGGATCGACGCACTAGTTTACGTGGTTGTGGTGAT
CATCCCGGTCTCTGTCCATCACCAGCAGCCTCTCTTCCCCTTCGGCTCCC
GAAGTGACCGAACCGCCTCTGCGCCTCTGCGCCTCAGTCAGGCTTTTCCA
TCATCATGCCTGGTCGAACGAAGAAGgtgcgtacacattgatcggagtgc
tctttgggctctgtgcaaatccattaacctacttttgtgttgatgtgtat
gcttgacacacggctcaatcaatgctcacctctcccaccccgctcttctc
ccctcgccctccgttgcgaggccttgttcacgcaagcacgcctgttcatc
attccctccgtttctctttgctcccctttaatcaatagcgcatgcatgct
catgacaacccttctctcgcaccatttcataatttacatagcctcccctc
tcctgtgcatgcagacgtccgtttgtttcctcgcttgcccttcccttggt
tgctttccgctgttcagttttcttcttttaccaaacccgccagccatctt
ttttaccagccctgcctcctctccaccccctctcctcactccttcccatt
cctcaataacaatagACCTCCGAAAGCGGAAAGTATGGCCGACGTGGGCC
CAACGCTGCCGTCTCTGCCTTTGGTGGCAACGATTCGGACGGGAACACGA
GCAGCAGTAGCGACAACGCCACCCCTTCCTCCTCCCCCTCAACTTCTTCG
CCGCCGTCCTGGTCCAGCCATTCCCATGAGTCTAGCGTCACCACCATTGC
GACTATGATGCCCCCCATCGCCAGCACCGCCAGCACGAGCAGCACGAGCA
GCACCAGCCCCATGAGCAGCAGCAGCAGCAGCGGCAGCAGCGGCAGCAAA
CGCGAATCCTCCTCTTCCTCTCATCACCATCAGTCCACCACCACCACCTC
CTCCTCCTCTTCCCTTCTCCGCGAGTCCCCCGGGCGTTGGAATGAGGCAG
AACATCTACTCTTCCTTCGAGGCCTTGAGATCTACGGCAAGTCCTGGAAG
AAAATCTCCCAAATTGTCAAAACCCGCACCGTGGTTCAAATCCGAACCCA
TGCTCAAAAATACCTGATCAAAATAGAAAAGGCCAAGAAGCTTGGGTTGA
CGGGAACGGTGATGATGAACGGAAAGGCAATTACGTCTTCTACCAAGGGA
GGAAGGGCAGGGGCGGGGGGAGGGGGTGGATATAAGGGGGAAGGATGGGG
AGGGGGCGCGAAGGGCCTCAAGTCTGAGTCTCTCCCTCACGTCATTTCAA
CTCATCATAGTGAGAGCAGCAGGAGCCACAATACCAATAGCGGCAGGTGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAAGCAACG
TGGCAAGATCTCTTCCTCTTCTTCCATCTCTCCCGTTTACCTCGAGGAGG
ATGACAGCCTCCTCCTAGGCGCCAGCTCTCTCATGCCCGGCTCCACCAGC
AATAACAGCAGCATTGCCATGAATAACAATAACGGCAACAACTACGCGCT
GTACGTTGAAGGGGCTGACGTCCTGTACTCGTCCTTCTCCTCCGGGTCGT
CGTCTGGTGGTGCCACCTCTTCCTCCGCCTCGTCTTCTGACTCCTCCTCT
GCGCCGCACTCGCCTATGGTGAGCGGGGGGGAGGAACAGCATCATCACCA
CCCCCATGACCAGCAACAATACAGGCAGGATGACGACGACGAGCACTACC
ATCACGATCACGCCTACGCTGAGGAGAAGCACGAGAGGGAGGCTGAGGAA
GGAGGAGGGGGGGAAGAGGGGGAAGAGGGGCACCATCCCATGGATTCAGA
GTTTGCCTGCTTATTGTTTAGTAATGAGCCTCACTTTCACCAGGATAAAG
CTGCGGAGCACGCAGCCCTCCTCCTTGACCAGCATCACGACTCCCAGATT
CAGCAGCAGCATCACCTTGAGGGGCAACAACAACAACAACTAGAAGAGCT
ACAGGAACGTAATCATTCATCATCGCAGCAGCAGCAGCAGCAGCACCAGC
GATACCAACAACAGCAGCAACGACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAACAACAACAACA
ACAACAACAAGGACAGGTGCACTACGCATCGACAATTCAGCAGCGACAAC
CCCAGCATCTCTCCCTGCCTATCCCCGCCTCCCGCTCTTCCTCCCTTCTC
GCCTCCTCCTCCTCTTCCATCACTGCCACTCTCGGCGGCCGACCAAAGCC
ACAACAGCATTTTTACCAACAAAAGCAACACCACCACCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCATCAACAACAACAGCAGCAGCAGCAGCATCAG
ATGCAGCAGCAACAGCAGGCCTTGGACGACTTCACACAATTGAACAACGC
TTGGCTCAGCCACGAGGGCGGACCTGAGGGCGGGGGGGAGGAAGGGAAGA
TGATGGCCCTCCTAAGGAGAAGCGGGGACTATTTAGCCCTAGGCGCAGGA
GGGGCATCCATGCTCGTGCAGCAAACGGACCAACACCCCACCTTTTCCTC
ATTACCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCATGGGCCAGGCGC
AGCAGCAGCACCCGAATTTGTTGGGCACTAGTAATAGTGTGAGTGTCAGC
TTGAGTGGCATGCTCGATGCGACGAACCCCCACAACGGGGAGGATGATTT
TTTGAATCGCTTCATGTGGGAATCGGAGGAAACGGCCTGCACGGCTGTTG
TTTAGAGAGAGACTCTTTTTATTCGTATATTTATCTATTGATGATGGATT
TGATTCATTTCTTAATTTGTCGGTTCATTTATTAATTCTTATTTATTCAT
TGATTCGGAATAAGTTGTTAGCGTGGTTGAGAGTGAGGGCTATGGTGTAG
CAAAGCGGGAGCGAAACTCCTGCCGCGCACAGAGACAACAGCAACAACAG
TGAGTGGGAAGCTGGTCACGAAGATACAATTCAAGAAGGAGTTCAAATAA
AATGTGAGAGACAACAGGAAACAACAAATGCGAAACGGACTGTGACCGAT
ACGAAAGAGAGAGCGAGTATACATATATATAGCTTTATGATGTGTGAGGG
ATGGACGAGAACACCGAGCGCGTACAAACTACCGCTGAATTTTGCGTTTT
GGGTATTTGAGCGAAATAGTAGGTTCACCCACCAACTTATCAAACATGTG
TGCGGTTTATTGCTTTCACACTTGAAGCCAAGCGATTACGATGAGCAACC
CGAGTAGACAAGTGGGAAGAAGAATCACAAGTCTCAGAGGGAATAAATAT
TATTACTTAAAATATAAATACTAATTGTAGCAGGCAGTACTGTCTGCCTG
TTTGAGAAAGTGCATGTATGTGCAAGTTTGTGTTGTGTGTGTGTGCGGGT
GTCACGCGAATAGCAAGCTTTCAACGATAACATGATAGCACTTTCCTCGT
ATTTTTTAAGATTATGTTTACCTTTCTACCTCGGTTCGAAGGAAAAGGAA
AGATAAAAGGAAGAGTTGGTAGCAGGTATGCAACAGCAGTGCGTCGTAGG
GCGATGCGCAAAGCGACCCTTCATTCGTGTGTCGGTATCTTTGTGTCCGT
GTCAGGGTGCACATGTGCCAACGAGAGGGGGAATGAACTGGAGAAAAGGG
GGATGTTGATGCTTTTGGCTACAAGAAAATTACAGCCCATCAAGAATGTT
ACCCCAGACGAAAACAGAAAGAGCAGAGAGCAAGCAGAAGCAGCGAAAAG
AGAGATCGTAAGGAAAGTGGATACACGGATGGATATCCCCACTTTTGAGA
AATAGATGGGAACTACTGCATGTTCACTGGCTGAGTAATGTGTCATGTAT
GTCACTGTGTGACATTCGCGGTTTAGTGTCTTTTTAAATATATCATGCGT
AAGTACGGGCATGTTGTCATACAAAGGAAATTCACACACGCAGAGGAAGA
AAGAGAATGAGAAGAGGGCAAAATAGCAGTATAATTGGCCATATGCAGCA
CTCCACCACCAATCGTACCACCAGGGGGACAACTAAGAGAAAGAAAAAAG
ATAGAGAACGAAACAAAAGAGTGAGAGACAAAAGAAGCAAGCAACCAACA
CACAAGTTCGCGCCTCCTGCGGAACCGACCCGGAAGACTCA
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protein sequence of NO01G04790.1

>NO01G04790.1-protein ID=NO01G04790.1-protein|Name=NO01G04790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=737bp
MPGRTKKTSESGKYGRRGPNAAVSAFGGNDSDGNTSSSSDNATPSSSPST
SSPPSWSSHSHESSVTTIATMMPPIASTASTSSTSSTSPMSSSSSSGSSG
SKRESSSSSHHHQSTTTTSSSSSLLRESPGRWNEAEHLLFLRGLEIYGKS
WKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSST
KGGRAGAGGGGGYKGEGWGGGAKGLKSESLPHVISTHHSESSRSHNTNSG
RCSSSSSSSSSSSSSSKQRGKISSSSSISPVYLEEDDSLLLGASSLMPGS
TSNNSSIAMNNNNGNNYALYVEGADVLYSSFSSGSSSGGATSSSASSSDS
SSAPHSPMVSGGEEQHHHHPHDQQQYRQDDDDEHYHHDHAYAEEKHEREA
EEGGGGEEGEEGHHPMDSEFACLLFSNEPHFHQDKAAEHAALLLDQHHDS
QIQQQHHLEGQQQQQLEELQERNHSSSQQQQQQHQRYQQQQQRQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQGQVHYASTIQQRQPQHLSLPIPASRSSS
LLASSSSSITATLGGRPKPQQHFYQQKQHHHQQQQQQQQQQHQQQQQQQQ
HQMQQQQQALDDFTQLNNAWLSHEGGPEGGGEEGKMMALLRRSGDYLALG
AGGASMLVQQTDQHPTFSSLPSSSSSSSSSSMGQAQQQHPNLLGTSNSVS
VSLSGMLDATNPHNGEDDFLNRFMWESEETACTAVV*
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Synonyms
Publications