NO01G04650, NO01G04650 (gene) Nannochloropsis oceanica

Overview
NameNO01G04650
Unique NameNO01G04650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1324
Alignment locationchr1:1226423..1227746 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1226423..1227746 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G04650 vs. NCBI_GenBank
Match: EWM29407.1 (hypothetical protein Naga_100042g9 [Nannochloropsis gaditana])

HSP 1 Score: 354.4 bits (908), Expect = 3.500e-94
Identity = 177/229 (77.29%), Postives = 192/229 (83.84%), Query Frame = 0 
Query:   17 RRSGALMVGA-AALLVGWRAPEAQAFTLSNPIHQNLQSLARHHISSSFTPLHGSLPPYDAPYSQPEEEKNFWGNDYVPKERHPGTMPPGTRLEDKPIAELSPVSNIPYPHFQEWPYHYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTVDERKQAMEGIDGDYWRSESAELVEPEPFIFERAKQKRFRIPYIVGVREEK 245
            R SG + VG  +  L+  R    + F  + PI  +   + RH   +S TP  G+LPPYDAPYSQPEEEKNFWGNDYVPK+RHPGTMPPGTRLEDKPI ELSPVSNIPYPHFQEWP+HYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMT DERKQAMEGIDGDYWRSE AEL+EPEP++FE AK KR R+PYIV VRE K
Sbjct:    5 RFSGLVFVGVMSGFLLDCR---VRGFVPATPILPSSAQVCRHW--NSVTPRPGALPPYDAPYSQPEEEKNFWGNDYVPKQRHPGTMPPGTRLEDKPIEELSPVSNIPYPHFQEWPFHYRFPAYQPRRLDFIEWMTQRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTPDERKQAMEGIDGDYWRSEGAELIEPEPYLFEMAKHKRERVPYIVTVREAK 228
The following BLAST results are available for this feature:
BLAST of NO01G04650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29407.13.500e-9477.29hypothetical protein Naga_100042g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007808NSK007808Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04650.1NO01G04650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577449gene_487Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100042g9gene1235Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04650.1NO01G04650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04650 ID=NO01G04650|Name=NO01G04650|organism=Nannochloropsis oceanica|type=gene|length=1324bp
ATGAACATGCGATCGAAGACGGTAACAAGAATAAGGGAAAGCAACAGCCG
ACGGAGCGGGGCATTGATGGTGGGGGCGGCAGCGCTTCTTGTGGGATGGC
GGGCACCCGAGGCTCAGgtacgtacgcaatgacgaccgcccactctcccc
ccgcccttctaaaatggcctaataaatataggattgcccggcactaggaa
tacatacccacgctcgcgtgttctacactcaataacgccaggaggtggcc
tcctcttgaaactatgccgcaattttgcacacgccccttttccctccccc
cttccggtgctccctccctccctgttttcctcttagcatctcctcctgtc
ccgtccaacggacaaacaatgcttgcatcccaatgtcacgtcgccttcta
gatcaacaatcattccctcaaattaatacctcgtcatgcacgcgtataca
gaggctctgctgcctttctttttctactccgagagcaaccatcctctcac
ccgtccctttcctcctctcctccatttccacctccctacccacacagGCA
TTTACACTCAGCAACCCCATTCACCAAAATCTCCAATCCCTGGCCCGCCA
TCACATCAGTAGCAGCTTTACCCCCCTTCATGGCTCCCTCCCCCCTTACG
ATGCGCCCTACTCCCAACCGGAGGAAGAAAAGAACTTTTGGGGCAATGAC
TACGTACCTAAGGAGCGACATCCCGGAACAATGCCACCAGGGACAAGGTT
GGAAGACAAGCCGATTGCAGAGTTGTCCCCTGTGTCGAATATTCCGTACC
CGCACTTCCAGGAATGGCCCTATCATTACCGTTTCCCGGCCTACCAGCCC
CGCAGGCTGGACTTCATCGAGTGGATGACACAGAGAGGGCTTATGGTGGA
AGATGATGGGGACACACGGGGAGTGCGATTTTTGGGGAGGAAGAGGAGGT
TTAGGGCGCAGAAGGCACAGGCGGATAAGGCTGCGGCGGAGGGGAGTGAC
CCCATGACGGTCGATGAGAGGAAACAGGCAATGGAGGGGATCGACGGGGA
TTATTGGCGCTCGGAAAGCGCGGAGCTCGTGGAACCGGAGCCGTTTATTT
TTGAACGAGCTAAGCAGAAACGGTTTAGGATTCCGTATATTGTGGGTGTA
AGGGAGGAGAAGGCGGCGAGGCTGGCAGCGGAGGCGGCGGCGGGGGGAGG
GGGGGAAGGAGGGTTGATGGGTGGGAGGGATGTGGTTAGTGGAGCATCGG
CGCCAGAGGCAGGGGAAAAGCTAGCTAAGGGGAGGAAGACGGCCGCTAAG
CCGCCGCCGACTGCCGAGATCTAA
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protein sequence of NO01G04650.1

>NO01G04650.1-protein ID=NO01G04650.1-protein|Name=NO01G04650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MNMRSKTVTRIRESNSRRSGALMVGAAALLVGWRAPEAQAFTLSNPIHQN
LQSLARHHISSSFTPLHGSLPPYDAPYSQPEEEKNFWGNDYVPKERHPGT
MPPGTRLEDKPIAELSPVSNIPYPHFQEWPYHYRFPAYQPRRLDFIEWMT
QRGLMVEDDGDTRGVRFLGRKRRFRAQKAQADKAAAEGSDPMTVDERKQA
MEGIDGDYWRSESAELVEPEPFIFERAKQKRFRIPYIVGVREEKAARLAA
EAAAGGGGEGGLMGGRDVVSGASAPEAGEKLAKGRKTAAKPPPTAEI*
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Synonyms
Publications