NO01G04590, NO01G04590 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04590 vs. NCBI_GenBank
Match: EWM29349.1 (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 341.3 bits (874), Expect = 4.200e-90 Identity = 179/287 (62.37%), Postives = 201/287 (70.03%), Query Frame = 0 Query: 1 MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGL------------NRLQPPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSVQQVFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLLKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFL 276 MSP +S R+ P A V+++L LL+HLSLVA G+ G + PP P V+VQQVF+CT+RWCMQRGAGATMGSFIGLTPYGS++RVQGVDCLGRCN+GPN+RLL+SNGTFEELSY+DSV+KVYDVFTSQLGI INQSSADCLKLNFQGNAHLDKNEVD+AI CYDKAIPLSH+GQEGVLRVMRSTAYLQRAYTHFMQFRELV+Q AQPLPDQA L+ HASSPFL Sbjct: 84 MSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFL 370
BLAST of NO01G04590 vs. NCBI_GenBank
Match: CBJ28575.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 185.3 bits (469), Expect = 3.800e-43 Identity = 95/230 (41.30%), Postives = 141/230 (61.30%), Query Frame = 0 Query: 99 QQVFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLLKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVL-------------------RVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERV-HASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAV 309 ++V++CTNRWCM++G+ AT+GSF+GL P G ++ VQGV+CLGRCNKGPN+R+ + G + E + I++VE+VY + LG +++ +A CLK NF NA L++NEV AI YDKAI + Q+GVL VMR+TA++QRAY+H EL+ ++ P Q +L + AS + +L + Q E RG LY+ T F++ L+EFA+ Sbjct: 191 KRVYICTNRWCMEKGSAATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREGSWCGTVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHELWEASGASARMVLLGKFAQDCEGRGSLYQKTKFRYGLYEFAL 419
BLAST of NO01G04590 vs. NCBI_GenBank
Match: GAX16107.1 (hypothetical protein FisN_3Hh413 [Fistulifera solaris]) HSP 1 Score: 165.2 bits (417), Expect = 4.100e-37 Identity = 100/297 (33.67%), Postives = 160/297 (53.87%), Query Frame = 0 Query: 101 VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLL--KSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396 V+V ++ +++ A + +F+ L P S + V + KG IR + K N TF E+S +DSV+KVY + T + + ++ DCLK ++GN HL+ ++D AI YDKAI QEG++ +MRSTAYLQRA TH +E+V+++ +P F E + P L I + + E + + +R T ++ L+++A+ KA DA+ AT +LP + +W+RAG L L R K++ Y+ + +D S L IE L Q + AR G +E+ L + LD Sbjct: 58 VYVDQSKASLEKRANTALDAFLALAP--SSVEVTPAVFKSKA-KGGMIRCISSKKNKTF-EVSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETGVTQQEGIVLLMRSTAYLQRAITHRTTLKEIVNELIGMVPSALPFVFDEAIR--HPSLANAIFRKFVEQTERQDKHFRKTQYRHGLYQYALLKAAQDAIRATQLLPYYEVAWLRAGEILSELWRLKESAQYYEKAIDLDSSLEPSLRPVIERLRLRQELLDTARAYGWTEDILRLALD 348
BLAST of NO01G04590 vs. NCBI_GenBank
Match: GAX10216.1 (hypothetical protein FisN_3Lh413 [Fistulifera solaris]) HSP 1 Score: 161.8 bits (408), Expect = 4.500e-36 Identity = 98/297 (33.00%), Postives = 161/297 (54.21%), Query Frame = 0 Query: 101 VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLL--KSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396 V+V ++ +++ A + +F+ L P S + V + KG IR + K N +F E+S +DSV+KVY + T + + ++ DCLK ++GN HL+ ++D AI YDKAI QEG++ +MRSTAYLQRA +H +E+V+++ +P F E + P L I + + E + + +R T ++ L+++A+ KA DA+ AT +LP + +W+RAG L L R K++ Y+ +++D S L IE L Q + AR G +E+ L + LD Sbjct: 58 VYVDQSKASLEKRANTALDAFLALAP--SSVAVTPAVFKSKA-KGGMIRCISSKKNKSF-EVSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETEVGQQEGIVLLMRSTAYLQRAISHRTTLKEIVNELIGMVPSALPFVFDEAIR--HPSLANAIFRKFVEHTERQDKHFRKTQYRHGLYQYALLKAAQDAIRATQLLPYYEVAWLRAGEILSELWRLKESAQYYENAIELDSSLESSLRPVIERLRLRQELLDTARAYGWTEDILRLALD 348
BLAST of NO01G04590 vs. NCBI_GenBank
Match: XP_002293458.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89194.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 137.5 bits (345), Expect = 9.100e-29 Identity = 90/302 (29.80%), Postives = 152/302 (50.33%), Query Frame = 0 Query: 118 MGSFIGLTPYGSQMRVQGVDCLGRC---NKGPNIRLLK----SNGTFE-------ELSYIDSVEKVYDVFTSQLGI-SINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLS--HKGQE-------GVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396 M +FI L+P +RV + + KG +R ++ +G + E+ +DS+EKVY + T + + INQ + +CLK FQGN LD+++ QAI Y++A+ + H ++ G + + R+TAYL+RA H R LV + +P + +L + ++ P L I RL Q + ++EFA+ A D+L AT +LP K+W+ AG L LR+ K++ Y+ +++DPS KE++ +E K Q ++ A+ G S ++L + LD Sbjct: 1 MEAFISLSPTSENVRVYPANWSKQSKSKGKGHTVRCIRRRRSESGAADGEVVSALEVGNVDSIEKVYRIITEHMKMGEINQKACECLKCYFQGNERLDEDQPTQAITLYNQALTTARDHNNKQTTPKLPLGTILMKRATAYLRRAANHRKLLRILVRDLTDTVPSASTIKILYQTSSTHPALAPSIFQRLIQDSKLXXXXXXXXXXXXDMYEFALLHAAQDSLQATQLLPTNGKAWLLAGQCLAELRKLKESNQYYERALELDPSLEKEMKGVLERNRKSQEFIEVAKASGFSGDTLRLALD 302 The following BLAST results are available for this feature:
BLAST of NO01G04590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04590 ID=NO01G04590|Name=NO01G04590|organism=Nannochloropsis oceanica|type=gene|length=1700bpback to top protein sequence of NO01G04590.1 >NO01G04590.1-protein ID=NO01G04590.1-protein|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bpback to top Synonyms
Publications
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