NO01G04590, NO01G04590 (gene) Nannochloropsis oceanica

Overview
NameNO01G04590
Unique NameNO01G04590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1700
Alignment locationchr1:1213263..1214962 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1213263..1214962 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of NO01G04590 vs. NCBI_GenBank
Match: EWM29349.1 (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 4.200e-90
Identity = 179/287 (62.37%), Postives = 201/287 (70.03%), Query Frame = 0
Query:    1 MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGL------------NRLQPPSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVSVQQVFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLLKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFL 276
            MSP  +S R+   P   A  V+++L LL+HLSLVA G+  G             +   PP P                                             V+VQQVF+CT+RWCMQRGAGATMGSFIGLTPYGS++RVQGVDCLGRCN+GPN+RLL+SNGTFEELSY+DSV+KVYDVFTSQLGI INQSSADCLKLNFQGNAHLDKNEVD+AI CYDKAIPLSH+GQEGVLRVMRSTAYLQRAYTHFMQFRELV+Q AQPLPDQA    L+  HASSPFL
Sbjct:   84 MSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFL 370          
BLAST of NO01G04590 vs. NCBI_GenBank
Match: CBJ28575.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 185.3 bits (469), Expect = 3.800e-43
Identity = 95/230 (41.30%), Postives = 141/230 (61.30%), Query Frame = 0
Query:   99 QQVFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLLKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVL-------------------RVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERV-HASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAV 309
            ++V++CTNRWCM++G+ AT+GSF+GL P G ++ VQGV+CLGRCNKGPN+R+ +  G + E + I++VE+VY +    LG  +++ +A CLK NF  NA L++NEV  AI  YDKAI   +  Q+GVL                    VMR+TA++QRAY+H     EL+ ++    P Q    +L  +  AS     + +L +  Q  E RG LY+ T F++ L+EFA+
Sbjct:  191 KRVYICTNRWCMEKGSAATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREGSWCGTVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHELWEASGASARMVLLGKFAQDCEGRGSLYQKTKFRYGLYEFAL 419          
BLAST of NO01G04590 vs. NCBI_GenBank
Match: GAX16107.1 (hypothetical protein FisN_3Hh413 [Fistulifera solaris])

HSP 1 Score: 165.2 bits (417), Expect = 4.100e-37
Identity = 100/297 (33.67%), Postives = 160/297 (53.87%), Query Frame = 0
Query:  101 VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLL--KSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396
            V+V  ++  +++ A   + +F+ L P  S + V       +  KG  IR +  K N TF E+S +DSV+KVY + T  + + ++    DCLK  ++GN HL+  ++D AI  YDKAI      QEG++ +MRSTAYLQRA TH    +E+V+++   +P    F   E +    P L   I  +  +  E + + +R T ++  L+++A+ KA  DA+ AT +LP +  +W+RAG  L  L R K++   Y+  + +D S    L   IE L   Q  +  AR  G +E+ L + LD
Sbjct:   58 VYVDQSKASLEKRANTALDAFLALAP--SSVEVTPAVFKSKA-KGGMIRCISSKKNKTF-EVSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETGVTQQEGIVLLMRSTAYLQRAITHRTTLKEIVNELIGMVPSALPFVFDEAIR--HPSLANAIFRKFVEQTERQDKHFRKTQYRHGLYQYALLKAAQDAIRATQLLPYYEVAWLRAGEILSELWRLKESAQYYEKAIDLDSSLEPSLRPVIERLRLRQELLDTARAYGWTEDILRLALD 348          
BLAST of NO01G04590 vs. NCBI_GenBank
Match: GAX10216.1 (hypothetical protein FisN_3Lh413 [Fistulifera solaris])

HSP 1 Score: 161.8 bits (408), Expect = 4.500e-36
Identity = 98/297 (33.00%), Postives = 161/297 (54.21%), Query Frame = 0
Query:  101 VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRLL--KSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396
            V+V  ++  +++ A   + +F+ L P  S + V       +  KG  IR +  K N +F E+S +DSV+KVY + T  + + ++    DCLK  ++GN HL+  ++D AI  YDKAI      QEG++ +MRSTAYLQRA +H    +E+V+++   +P    F   E +    P L   I  +  +  E + + +R T ++  L+++A+ KA  DA+ AT +LP +  +W+RAG  L  L R K++   Y+  +++D S    L   IE L   Q  +  AR  G +E+ L + LD
Sbjct:   58 VYVDQSKASLEKRANTALDAFLALAP--SSVAVTPAVFKSKA-KGGMIRCISSKKNKSF-EVSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETEVGQQEGIVLLMRSTAYLQRAISHRTTLKEIVNELIGMVPSALPFVFDEAIR--HPSLANAIFRKFVEHTERQDKHFRKTQYRHGLYQYALLKAAQDAIRATQLLPYYEVAWLRAGEILSELWRLKESAQYYENAIELDSSLESSLRPVIERLRLRQELLDTARAYGWTEDILRLALD 348          
BLAST of NO01G04590 vs. NCBI_GenBank
Match: XP_002293458.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED89194.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 137.5 bits (345), Expect = 9.100e-29
Identity = 90/302 (29.80%), Postives = 152/302 (50.33%), Query Frame = 0
Query:  118 MGSFIGLTPYGSQMRVQGVDCLGRC---NKGPNIRLLK----SNGTFE-------ELSYIDSVEKVYDVFTSQLGI-SINQSSADCLKLNFQGNAHLDKNEVDQAIGCYDKAIPLS--HKGQE-------GVLRVMRSTAYLQRAYTHFMQFRELVDQIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQFSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQVVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLD 396
            M +FI L+P    +RV   +   +     KG  +R ++     +G  +       E+  +DS+EKVY + T  + +  INQ + +CLK  FQGN  LD+++  QAI  Y++A+  +  H  ++       G + + R+TAYL+RA  H    R LV  +   +P  +   +L +  ++ P L   I  RL Q  +              ++EFA+  A  D+L AT +LP   K+W+ AG  L  LR+ K++   Y+  +++DPS  KE++  +E   K Q ++  A+  G S ++L + LD
Sbjct:    1 MEAFISLSPTSENVRVYPANWSKQSKSKGKGHTVRCIRRRRSESGAADGEVVSALEVGNVDSIEKVYRIITEHMKMGEINQKACECLKCYFQGNERLDEDQPTQAITLYNQALTTARDHNNKQTTPKLPLGTILMKRATAYLRRAANHRKLLRILVRDLTDTVPSASTIKILYQTSSTHPALAPSIFQRLIQDSKLXXXXXXXXXXXXDMYEFALLHAAQDSLQATQLLPTNGKAWLLAGQCLAELRKLKESNQYYERALELDPSLEKEMKGVLERNRKSQEFIEVAKASGFSGDTLRLALD 302          
The following BLAST results are available for this feature:
BLAST of NO01G04590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
EWM29349.14.200e-9062.37conserved unknown protein [Nannochloropsis gaditan... [more]
CBJ28575.13.800e-4341.30conserved unknown protein [Ectocarpus siliculosus][more]
GAX16107.14.100e-3733.67hypothetical protein FisN_3Hh413 [Fistulifera sola... [more]
GAX10216.14.500e-3633.00hypothetical protein FisN_3Lh413 [Fistulifera sola... [more]
XP_002293458.19.100e-2929.80predicted protein [Thalassiosira pseudonana CCMP13... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007816NSK007816Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04590.1NO01G04590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537631gene_479Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g1gene1242Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04590.1NO01G04590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04590 ID=NO01G04590|Name=NO01G04590|organism=Nannochloropsis oceanica|type=gene|length=1700bp
ATGTCACCACCGCTAACGTCAAGACGGGCGCCTGCACGCCCTCAATCAAA
CGCATTTGTCGTCCTTACCCTCCTAATCCTTCTCGTTCACTTGTCCCTCG
TCGCTGATGGCTGGCGGTTTGGTCTAAATCGGCTTCAGCCCCCTTCTCCA
TCATCATCCCCGAGACGGCCCCGCGGAGATCTCCTCGCGGCTGCAGCCGC
CTCCGCCTCAAGCAGCAGCGGCGGTGGTGGCGGGACGGCCACGGTTTCTA
AAGGAGAAGGAGGAGCAGCAGATTCAGGAGGAGTTGTGTCGGTCCAGCAG
GTGTTCGTCTGCACGAATCGATGGTGTATGCAACGAGGGGCCGGGGCGAC
GATGGGGAGCTTTATCGGCTTAACGCCATATGGGAGTCAGATGCGGGTGC
AGGGTGTTGATTGTTTAGGGAGATGTAACAAGGGCCCAAATATAAGACTC
TTGAAATCGAATGGCACCTTTGAAGAGCTGAGCTACATTGATTCGGTGGA
AAAGgtgagggaaggagggagggagggacggagggggggagagacggaac
agggtagagcatgttgtcggttatggatgaaatgaaggaggagcgctgat
gaatagagatacattctcgtctactactgacggccatcgcccattttctc
aaactattcctcctcccgtcccacaatgcccacccccccctccctatcac
tctcacacagGTCTATGACGTGTTCACCTCCCAACTCGGTATCAGCATCA
ACCAATCCTCCGCCGACTGCCTGAAGCTCAACTTCCAAGGCAATGCCCAC
TTGGACAAAAACGAGGTCGATCAGGCTATTGGATGCTACGACAAGGCCAT
CCCCCTCTCTCACAAAGGGCAGGAAGGCGTGTTACGTGTCATGCGTTCGA
CCGCTTACCTCCAAAGGGCTTACACCCACTTTATGCAATTTAGGGAGCTC
GTCGACCAGATAGCACAGCCCCTGCCCGACCAGGCAGTCTTTGGCTTGTT
GGAGCGCGTACATGCCTCCTCCCCCTTCCTTGTTGTCCCTATTTTATCGC
GCCTTACTCAGGTGTATGAGGCCCGGGGGCGGTTATACCGCTTGACCACG
TTCCAGTTTTCGCTGTTTGAATTCGCGGTGCATAAGGCGTGCCATGATGC
ACTGACTGCGACGCATATATTGCCGAATTTCACCAAGAGTTGGATCAGAG
CAGgtaggctttggatggtgggttgcggatgtgagtgggggagggatatc
tcgataggtatcttgtcgcttgctccaatgaggcgtacttcgatccctta
ttccactcaccgtctcattcactcgttcttccatcgctcctacctctttc
cttcccttctttccctctttgccctccctcaggaggcgtacttcgatccc
ttattccactcaccgtctcattcactcgttcttccatcgctcctacctct
ttccttcccttctttccctctttgccctccctcagGCCATGGCTTGCGGT
TCCTTCGTCGATTCAAGGACGCGATCGCCTGCTACCAGGTCGTTGTCAAG
ATCGATCCTTCCACCGCTAAGGAGCTAGAACAAGAAATAGAGCTTCTCGA
AAAGGTACAGAGGTATGTGGCGAATGCACGTGAGCAGGGAGTTTCGGAGG
AAAGCCTTGTGATAACGCTGGATGCGTTGGGTGTGTTTGCGTGTTCATGA
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protein sequence of NO01G04590.1

>NO01G04590.1-protein ID=NO01G04590.1-protein|Name=NO01G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MSPPLTSRRAPARPQSNAFVVLTLLILLVHLSLVADGWRFGLNRLQPPSP
SSSPRRPRGDLLAAAAASASSSSGGGGGTATVSKGEGGAADSGGVVSVQQ
VFVCTNRWCMQRGAGATMGSFIGLTPYGSQMRVQGVDCLGRCNKGPNIRL
LKSNGTFEELSYIDSVEKVYDVFTSQLGISINQSSADCLKLNFQGNAHLD
KNEVDQAIGCYDKAIPLSHKGQEGVLRVMRSTAYLQRAYTHFMQFRELVD
QIAQPLPDQAVFGLLERVHASSPFLVVPILSRLTQVYEARGRLYRLTTFQ
FSLFEFAVHKACHDALTATHILPNFTKSWIRAGHGLRFLRRFKDAIACYQ
VVVKIDPSTAKELEQEIELLEKVQRYVANAREQGVSEESLVITLDALGVF
ACS*
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Synonyms
Publications