NO01G04440, NO01G04440 (gene) Nannochloropsis oceanica

Overview
NameNO01G04440
Unique NameNO01G04440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length608
Alignment locationchr1:1179699..1180306 +

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Properties
Property NameValue
DescriptionSmall nuclear ribonucleoprotein family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1179699..1180306 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006396RNA processing
GO:0016043cellular component organization
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR027141LSm4/Sm_D1/D3
IPR001163Ribonucl_LSM
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Homology
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BLAST of NO01G04440 vs. NCBI_GenBank
Match: EWM29365.1 (small nuclear ribonucleo protein [Nannochloropsis gaditana])

HSP 1 Score: 212.6 bits (540), Expect = 6.600e-52
Identity = 110/118 (93.22%), Postives = 116/118 (98.31%), Query Frame = 0 
Query:    1 MAAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNKTAGRGRGGAFRGKKRKAG 119
            MA +KA+SVPVKLLKEGEGHVVTAELKSGEVYRGLL+ESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLK IVLP+ILK+APVFKKVQGMKKKES+KTAGRGRGGAFRGKKRKAG
Sbjct:    1 MATMKALSVPVKLLKEGEGHVVTAELKSGEVYRGLLMESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSKTAGRGRGGAFRGKKRKAG 118
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BLAST of NO01G04440 vs. NCBI_GenBank
Match: CBJ27274.1 (Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus siliculosus])

HSP 1 Score: 128.3 bits (321), Expect = 1.600e-26
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 0 
Query:    6 AVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGM 94
            AV VP+KLL EGEGH VT E+K+GE+YRG L E+EDTMN  ++ VT T R+G+V KLEQVYLRGSH+KL+VLPD+LKNAPVFK VQ M
Sbjct:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 90
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BLAST of NO01G04440 vs. NCBI_GenBank
Match: OQR95559.1 (small nuclear ribonucleoprotein Sm D3 [Thraustotheca clavata])

HSP 1 Score: 124.8 bits (312), Expect = 1.800e-25
Identity = 61/108 (56.48%), Postives = 84/108 (77.78%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKK---KESNKTAGRGRGGA 110
            K++ VP+ LL EGEGH +T ELK+GE+Y+G L+E+ED+MN  L DVT T R+G++ +LEQVY+RGS +KL +LPD+L+ +P+FKKVQ +KK   K+  K  GRGRG A
Sbjct:    3 KSLGVPLSLLHEGEGHTITLELKNGEIYKGHLLEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKVQALKKPNDKKPKKAKGRGRGTA 110
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: XP_008911278.1 (hypothetical protein PPTG_15731 [Phytophthora parasitica INRA-310] >ETI38002.1 hypothetical protein F443_16183 [Phytophthora parasitica P1569] >ETK78198.1 hypothetical protein L915_15740 [Phytophthora parasitica] >ETL31639.1 hypothetical protein L916_15631 [Phytophthora parasitica] >ETL84859.1 hypothetical protein L917_15452 [Phytophthora parasitica] >ETM38036.1 hypothetical protein L914_15587 [Phytophthora parasitica] >ETN03505.1 hypothetical protein PPTG_15731 [Phytophthora parasitica INRA-310] >ETO66758.1 hypothetical protein F444_16167 [Phytophthora parasitica P1976] >ETP07885.1 hypothetical protein F441_16012 [Phytophthora parasitica CJ01A1] >ETP35920.1 hypothetical protein F442_16035 [Phytophthora parasitica P10297] >KUF79105.1 Small nuclear ribonucleoprotein Sm D3 [Phytophthora nicotianae] >KUF98867.1 hypothetical protein AM588_10008447 [Phytophthora nicotianae])

HSP 1 Score: 124.0 bits (310), Expect = 3.100e-25
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGM-------KKKESNKTAGRGRGG 109
            K V VP+ LL EGEG  VT ELK+GEVYRG LVESED+MN  LSDV  T R+G+  KLE VY+RGSH+KL++LPDILKN+P+  KVQ +       KKK++ K+ GR R G
Sbjct:    3 KTVGVPISLLHEGEGRTVTIELKNGEVYRGHLVESEDSMNCQLSDVVLTQRDGQKSKLELVYVRGSHIKLVILPDILKNSPLLSKVQALSKKNEDSKKKKTGKSQGRRRTG 113
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: OQR94270.1 (small nuclear ribonucleoprotein Sm D3 [Achlya hypogyna])

HSP 1 Score: 123.6 bits (309), Expect = 4.100e-25
Identity = 57/96 (59.38%), Postives = 79/96 (82.29%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNK 101
            K+V VP+ LL EGEGHV+T ELK+GE+Y+G L+E+ED+MNV L DVT TAR+G++ +LEQVY+RGS +KL +LPD+L+ +P+FKK+Q +KK    K
Sbjct:    3 KSVGVPLSLLHEGEGHVITLELKNGEIYKGHLLEAEDSMNVQLKDVTLTARDGQLSRLEQVYVRGSQVKLFILPDMLQKSPLFKKIQAIKKPNEKK 98
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: XP_008872015.1 (hypothetical protein H310_08142 [Aphanomyces invadans] >ETV99459.1 hypothetical protein H310_08142 [Aphanomyces invadans])

HSP 1 Score: 120.2 bits (300), Expect = 4.500e-24
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKE 98
            K++ VP+ LL EGEGH +T ELK+GE+YRG LVESED+MN  L  VT T R+G++ +LEQVY+RGS +KL +LPD+L+ +P+FKKVQ +KK +
Sbjct:    3 KSLGVPLSLLHEGEGHAITLELKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYIRGSQVKLFILPDLLQKSPLFKKVQALKKPD 95
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: XP_012204473.1 (hypothetical protein SPRG_09658, partial [Saprolegnia parasitica CBS 223.65] >KDO24825.1 hypothetical protein SPRG_09658, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.8 bits (299), Expect = 5.900e-24
Identity = 56/103 (54.37%), Postives = 83/103 (80.58%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNKTAGRGRG 108
            K++ VP+ LL EGEGH +T ELK+GE+Y+G L+E+ED+MN  L DVT T R+G++ +LEQVY+RGS +KL +LPD+L+ +P+FKK+Q + KK ++K A +G+G
Sbjct:   21 KSLGVPLSLLHEGEGHTITLELKNGEIYKGHLMEAEDSMNCQLKDVTLTGRDGQLSRLEQVYIRGSQVKLFILPDMLQKSPLFKKIQAL-KKPNDKKAKKGKG 122
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: XP_009833653.1 (hypothetical protein H257_09206 [Aphanomyces astaci] >ETV76741.1 hypothetical protein H257_09206 [Aphanomyces astaci])

HSP 1 Score: 119.4 bits (298), Expect = 7.700e-24
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKE 98
            K++ VP+ LL EGEGH +T ELK+GE+YRG LVESED+MN  L  VT T R+G++ +LEQVY+RGS +KL +LPD+L+ +P+FKKVQ +KK +
Sbjct:    3 KSLGVPLSLLHEGEGHAITLELKNGEIYRGHLVESEDSMNCQLKQVTLTGRDGQISRLEQVYVRGSQVKLFILPDMLQKSPLFKKVQALKKPD 95
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: GAQ92316.1 (small nuclear ribonucleoprotein D3 [Klebsormidium nitens])

HSP 1 Score: 119.0 bits (297), Expect = 1.000e-23
Identity = 52/93 (55.91%), Postives = 75/93 (80.65%), Query Frame = 0 
Query:    5 KAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKE 98
            K++ +PVKLL E EGHVVT E+KSGE YRG L+E+ED  NV L ++THTA++GKV +LE V++RGS ++ +++PD+LKNAP+FK++    KK+
Sbjct:    3 KSLGIPVKLLHEAEGHVVTVEIKSGETYRGTLIEAEDNWNVQLENITHTAKDGKVGQLEHVFIRGSKVRFLIIPDMLKNAPMFKRIDPKTKKQ 95
[Close]
BLAST of NO01G04440 vs. NCBI_GenBank
Match: XP_009034995.1 (hypothetical protein AURANDRAFT_36815 [Aureococcus anophagefferens] >EGB10171.1 hypothetical protein AURANDRAFT_36815 [Aureococcus anophagefferens])

HSP 1 Score: 118.6 bits (296), Expect = 1.300e-23
Identity = 61/104 (58.65%), Postives = 81/104 (77.88%), Query Frame = 0 
Query:    2 AAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLK-----LIVLPDILKNAPVFKKVQGMKKKESNK 101
            AA KAV VP+KLL EGEGH+VT ELK+GE+YRG L ESE+TMN  ++DV  TAR+G+V KLE VY+RGS +K      ++LPD+LK++PVF+KV+ +KK +  K
Sbjct:    3 AAAKAVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKKADDAK 106
The following BLAST results are available for this feature:
BLAST of NO01G04440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29365.16.600e-5293.22small nuclear ribonucleo protein [Nannochloropsis ... [more]
CBJ27274.11.600e-2670.45Small nuclear ribonucleoprotein-associated protein... [more]
OQR95559.11.800e-2556.48small nuclear ribonucleoprotein Sm D3 [Thraustothe... [more]
XP_008911278.13.100e-2559.46hypothetical protein PPTG_15731 [Phytophthora para... [more]
OQR94270.14.100e-2559.38small nuclear ribonucleoprotein Sm D3 [Achlya hypo... [more]
XP_008872015.14.500e-2459.14hypothetical protein H310_08142 [Aphanomyces invad... [more]
XP_012204473.15.900e-2454.37hypothetical protein SPRG_09658, partial [Saproleg... [more]
XP_009833653.17.700e-2459.14hypothetical protein H257_09206 [Aphanomyces astac... [more]
GAQ92316.11.000e-2355.91small nuclear ribonucleoprotein D3 [Klebsormidium ... [more]
XP_009034995.11.300e-2358.65hypothetical protein AURANDRAFT_36815 [Aureococcus... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04440.1NO01G04440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577388gene_464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04440.1NO01G04440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04440 ID=NO01G04440|Name=NO01G04440|organism=Nannochloropsis oceanica|type=gene|length=608bp
ATGGCCGCAATCAAAGgtacgtccgctcggcccccctcttctactccacc
tcctcacacagcaccagcataatccagaccctagcaggcaagatgaggat
cagaacggggggcgtgtacacagttaacacgcacgtatgacgatgatggt
ttcgcggcggcctgtgccattttgtcggtggccgatgtcactgtctctct
cggtccataccccaccactcatctcccgcttcttttccgcatctccccac
cctccctcccacagCGGTAAGCGTGCCAGTCAAGCTACTAAAGGAAGGCG
AAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAGGTATATCGCGGG
CTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTTGTCGGACGTGAC
GCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGCAAGTGTATTTGC
GAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATTTTGAAGAACGCA
CCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGAGTCGAATAAGAC
AGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGAAGAGAAAGGCTG
GTCAGTAA
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protein sequence of NO01G04440.1

>NO01G04440.1-protein ID=NO01G04440.1-protein|Name=NO01G04440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MAAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDV
THTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNK
TAGRGRGGAFRGKKRKAGQ*
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Synonyms
Publications