NO01G04350, NO01G04350 (gene) Nannochloropsis oceanica

Overview
NameNO01G04350
Unique NameNO01G04350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr1:1159618..1160712 +

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Properties
Property NameValue
DescriptionKua-ubiquitin conjugating enzyme hybrid, localization
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1159618..1160712 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019547Kua
Homology
BLAST of NO01G04350 vs. NCBI_GenBank
Match: GAX29072.1 (ubiquitin-conjugating enzyme E2 variant [Fistulifera solaris])

HSP 1 Score: 186.0 bits (471), Expect = 2.000e-43
Identity = 92/186 (49.46%), Postives = 119/186 (63.98%), Query Frame = 0
Query:  149 PADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHL--TKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCWKL 333
            PA L     T+A S V +D  SG+ HWSVDNYG+G+TP++G +I AFQGHH APWTIT R FCNNV+K+      A + ++    + P   LFA  F  L++LSQEFHK SH+  ++ P W   LQ +GL +SRK HG HH  P+E NY I++G  N  LD++G FR LE  +Y   GV  N WKL
Sbjct:  126 PAALQTTSLTLA-SWVLADLGSGILHWSVDNYGNGRTPIMGGIIAAFQGHHSAPWTITQRGFCNNVYKLCLPFGLAPVTLLTWLGAGPQTILFATTFCVLEILSQEFHKWSHMLGSETPGWVNRLQALGLTVSRKTHGLHHLAPYEGNYSIISGVTNRILDQTGFFRRLEHLIYRWNGVEANAWKL 310          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: PTQ41486.1 (hypothetical protein MARPO_0034s0071 [Marchantia polymorpha])

HSP 1 Score: 183.7 bits (465), Expect = 1.000e-42
Identity = 95/230 (41.30%), Postives = 132/230 (57.39%), Query Frame = 0
Query:  113 LESTWVHRMHVATHYIVTLVALQQVATSYVVKGGATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPKFQAE 341
            LEST  HR+ V       +  L +  T+       +P D A++  +   +   SD  +GV+HW VDNYG  KTPV G+ I+AFQGHH  PWTIT R+F NN+H I +  +   +A  L  PSNP L  F  LF    V+SQ+FH  SH+ K   P   + LQD G+++SRK HG HH +P++ NYCI++G  N FLD++ +F  LE  ++   GV P  W    P++  E
Sbjct:    8 LESTMEHRLWVGAGAASVMGLLAKAVTA-----SHSPEDAAVICVSALAAYSLSDLGTGVYHWGVDNYGDAKTPVFGSQIDAFQGHHKRPWTITKRQFANNIHAIAR-PVALFLAPFLALPSNPALDTFLGLFLGFVVMSQQFHAWSHMKKSQLPPLVIALQDRGILVSRKMHGAHHRSPYDINYCIVSGLWNPFLDKNRIFPSLEAFIHSNYGVAPRSWAETQPEWLQE 231          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_002502581.1 (hypothetical protein MICPUN_58724 [Micromonas commoda] >ACO63839.1 hypothetical protein MICPUN_58724 [Micromonas commoda])

HSP 1 Score: 181.8 bits (460), Expect = 3.800e-42
Identity = 89/187 (47.59%), Postives = 117/187 (62.57%), Query Frame = 0
Query:  146 GATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            G  PA  A L+ +   +   SD  +GVFHWSVDNYGS  TPV+G +I+AFQGHH  PWTIT R+F NN+H     T+   + ++L     P    F  +F ++ VLSQ+FH  SH+ K   P   V LQD+G++ISRK HG HH  PFE NYCI++G  N  LD++  F  +E+ V+E TGV P CW
Sbjct:  131 GGDPAAWASLVGSGLLAYWLSDLGTGVFHWSVDNYGSKATPVMGGIIDAFQGHHKYPWTITKRQFANNIHTTCPATMCVTVPLLLTPGLAPDTCAFMGVFCSMIVLSQQFHAWSHMKKSQLPEIVVKLQDLGVLISRKGHGAHHRPPFEGNYCIVSGWWNPILDDNKFFNKMEKVVFEATGVAPRCW 317          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_003059239.1 (predicted protein [Micromonas pusilla CCMP1545] >EEH56371.1 predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 181.0 bits (458), Expect = 6.500e-42
Identity = 90/188 (47.87%), Postives = 114/188 (60.64%), Query Frame = 0
Query:  145 GGATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            GG  P   A L+A    +   SD  +G+FHWSVDNYGS +TPV+G VI+AFQGHH  PWTIT R+F NN H     T    + ++L     P   +F  +F ++ VLSQ+FH  SH  K   PA  +  QD GL+ISRK HGQHH  PFE  YCI++G  N  LD SG+ +  ER +Y+ TGV   CW
Sbjct:  133 GGDDPLAYASLLAAAVGAWWLSDLGTGIFHWSVDNYGSKQTPVMGDVIDAFQGHHKYPWTITKRQFANNTHTTCPATSCVTIPLLLTPDLGPNACVFMGVFCSMVVLSQQFHAWSHAKKSELPALVIAAQDAGLVISRKAHGQHHKPPFEGRYCIVSGWWNDALDGSGVLKRAERFIYDTTGVAARCW 320          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_007510584.1 (predicted protein [Bathycoccus prasinos] >CCO18117.1 predicted protein [Bathycoccus prasinos])

HSP 1 Score: 179.5 bits (454), Expect = 1.900e-41
Identity = 106/275 (38.55%), Postives = 152/275 (55.27%), Query Frame = 0
Query:   66 SRSTSPDLDLLPLTLEPASFSIDPASIETRVKRKGPXXXXXXXAGDVLE--STWVHRMHVATHY-IVTLVALQQVATSYVVKGGATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPL-----LTLFAILFFNLQVLSQEFHKISHL--TKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            SRS+S D   +  +++   F++  A +E  + RK           D  +  ST   R+    H+ I +L+A++ V    +V  G   A  A   AT+  S   +D  +G+FHWSVDNYG   TPV G VI+AFQGHH  PWTIT R++ NN+HK     +   +  +L+   + +       LF   F+ L VLSQ+ H  +H+  ++ P     LQDM L+++RK+HG HH +PFE +YCI+ G  N  LD+S  FR LER +YE TGV P CW
Sbjct:   65 SRSSSDD-GSIRCSIDGDEFTVSKAEMEAELLRKKMASMGGEMLRDPKDFVSTRGQRVQCGVHFGICSLLAMRGVYLDAIVMDGDVGAIAARAFATLFASYALADLGTGIFHWSVDNYGDKNTPVAGNVIDAFQGHHRWPWTITKRQWANNIHKTCIAPLLFTVPQLLVFGGSDMQGSGDSDLFFGSFWALVVLSQQTHAWAHMKPSEQPKIVTKLQDMNLMLTRKDHGAHHRSPFEGHYCIVNGWWNPLLDDSRFFRKLERMIYEGTGVAPRCW 338          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_003081311.1 (Kua-ubiquitin conjugating enzyme hybrid,localisation [Ostreococcus tauri] >CAL55480.1 Kua-ubiquitin conjugating enzyme hybrid,localisation [Ostreococcus tauri])

HSP 1 Score: 179.1 bits (453), Expect = 2.500e-41
Identity = 88/183 (48.09%), Postives = 118/183 (64.48%), Query Frame = 0
Query:  151 DLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAV-VLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            + A  +AT A +   SD  +G+FHWSVDNYGS  TP+LG VI+AFQGHH  PWTIT R++ NN+H  T    P +     LL    P   +F  +F  L VLSQ+FH  SH+ K   P+  +  QD+GL++ R++HGQHH  PFE +YCI++G  N  LD+SG FR LE+ +++ TGV P CW
Sbjct:  117 EAAAALATAALAYWTSDLGTGIFHWSVDNYGSKDTPLLGKVIDAFQGHHKYPWTITKRQWANNIH--TTCVAPLVFTTPTLLLNDRPTDLIFVGVFTALIVLSQQFHAWSHMKKSELPSAVLAAQDIGLLVGRRDHGQHHKAPFEGHYCIVSGYWNPILDDSGFFRKLEQMIFKATGVAPRCW 297          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_005535822.1 (similar to ubiquitin-conjugating enzyme E2 variant [Cyanidioschyzon merolae strain 10D] >BAM79536.1 similar to ubiquitin-conjugating enzyme E2 variant [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 179.1 bits (453), Expect = 2.500e-41
Identity = 83/192 (43.23%), Postives = 123/192 (64.06%), Query Frame = 0
Query:  152 LAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVL-------LHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPK 337
            +A+  AT  F+ + +DF SG++H+ +DNYGS +TP+ G  I AFQGHH  PWTIT+R+FCNNV K    ++  ++ V            ++  L  F+ +FF     +QEFHK SH+ +PP++A+ LQ  G +IS++ HGQHH +P+   YCI++G CN  LD++G FR LE  ++ VTGV P  W+LG  +
Sbjct:  196 VALEGATALFAYIMADFASGIYHFFLDNYGSRETPIFGEQIAAFQGHHQYPWTITHRDFCNNVFKSCVNSLLPLLLVAFSGAWGTSAEWTSIYLRSFSCVFFLSVAFAQEFHKWSHMIRPPSFAMFLQRSGWLISQRAHGQHHQSPYHEKYCIISGWCNQLLDDTGFFRGLEMLIWHVTGVEPLTWRLGASR 387          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: OUS48823.1 (ubiquitin-conjugating enzyme [Ostreococcus tauri])

HSP 1 Score: 179.1 bits (453), Expect = 2.500e-41
Identity = 88/183 (48.09%), Postives = 118/183 (64.48%), Query Frame = 0
Query:  151 DLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAV-VLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            + A  +AT A +   SD  +G+FHWSVDNYGS  TP+LG VI+AFQGHH  PWTIT R++ NN+H  T    P +     LL    P   +F  +F  L VLSQ+FH  SH+ K   P+  +  QD+GL++ R++HGQHH  PFE +YCI++G  N  LD+SG FR LE+ +++ TGV P CW
Sbjct:  117 EAAAALATAALAYWTSDLGTGIFHWSVDNYGSKDTPLLGKVIDAFQGHHKYPWTITKRQWANNIH--TTCVAPLVFTTPTLLLNDRPTDLIFVGVFTALIVLSQQFHAWSHMKKSELPSAVLAAQDIGLLVGRRDHGQHHKAPFEGHYCIVSGYWNPILDDSGFFRKLEQMIFKATGVAPRCW 297          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_001419607.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO97900.1 predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 177.6 bits (449), Expect = 7.200e-41
Identity = 86/179 (48.04%), Postives = 115/179 (64.25%), Query Frame = 0
Query:  154 MLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQVLSQEFHKISHLTKP--PAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCW 331
            M + T+  +   SD  +G+FHWSVDNYGS  TP+LG VI+AFQGHH  PWTIT R++ NNVH      +      +LL+     L +F  +F +L VLSQ+FH  SH+ K   P   +  QDMGL++ R++HGQHH +PFE +YCI++G  N  LD SG FR LE+ V++ TG  P CW
Sbjct:    1 MAVGTIGLAYWTSDLGTGIFHWSVDNYGSKATPLLGGVIDAFQGHHKYPWTITKRQWANNVHTTCVAPLVFTTPTLLLNDRATDL-IFVGVFTSLIVLSQQFHAWSHMKKSELPPLVLKAQDMGLLVGRRDHGQHHKSPFEGHYCIVSGYWNPILDGSGFFRALEQAVFKATGTAPRCW 178          
BLAST of NO01G04350 vs. NCBI_GenBank
Match: XP_002949397.1 (hypothetical protein VOLCADRAFT_89823 [Volvox carteri f. nagariensis] >EFJ49416.1 hypothetical protein VOLCADRAFT_89823 [Volvox carteri f. nagariensis])

HSP 1 Score: 176.8 bits (447), Expect = 1.200e-40
Identity = 93/208 (44.71%), Postives = 122/208 (58.65%), Query Frame = 0
Query:  128 IVTLVALQQVATSYVVKGGATPADLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHDAPWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPL-LTLFAILFFNLQVLSQEFHKISHLTK---PPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTGTCNSFLDESGLFRVLERGVYEVTGVMPNCWK 332
            I  + A  Q AT  V     +  D+ +    +  + + SD  +G++HW VDNYG G TPV G  I AFQGHH  PWTIT REF NN+H++      A  A++ L P  PL    ++  F  L  +SQ+FH  SH+ K   PPA  V LQD GL+I R+ HG HH  PFE NYCI++G  N  LD SG FR LE+ +++ TGV P CW+
Sbjct:  190 IAMIAATLQQATKQV----ESVEDMVVFGGAVLLAYILSDLGTGIYHWGVDNYGDGNTPVFGRQIAAFQGHHQRPWTITQREFANNLHQVFGPASYAAAALLSLSPVMPLGWNAWSSSFLFLVCMSQQFHAWSHMKKSELPPA-VVALQDSGLLIGRRMHGAHHKAPFEGNYCIVSGWWNPLLDSSGFFRALEKLIHDRTGVAPRCWE 392          
The following BLAST results are available for this feature:
BLAST of NO01G04350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
GAX29072.12.000e-4349.46ubiquitin-conjugating enzyme E2 variant [Fistulife... [more]
PTQ41486.11.000e-4241.30hypothetical protein MARPO_0034s0071 [Marchantia p... [more]
XP_002502581.13.800e-4247.59hypothetical protein MICPUN_58724 [Micromonas comm... [more]
XP_003059239.16.500e-4247.87predicted protein [Micromonas pusilla CCMP1545] >E... [more]
XP_007510584.11.900e-4138.55predicted protein [Bathycoccus prasinos] >CCO18117... [more]
XP_003081311.12.500e-4148.09Kua-ubiquitin conjugating enzyme hybrid,localisati... [more]
XP_005535822.12.500e-4143.23similar to ubiquitin-conjugating enzyme E2 variant... [more]
OUS48823.12.500e-4148.09ubiquitin-conjugating enzyme [Ostreococcus tauri][more]
XP_001419607.17.200e-4148.04predicted protein [Ostreococcus lucimarinus CCE990... [more]
XP_002949397.11.200e-4044.71hypothetical protein VOLCADRAFT_89823 [Volvox cart... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007847NSK007847Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04350.1NO01G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04350.1NO01G04350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04350 ID=NO01G04350|Name=NO01G04350|organism=Nannochloropsis oceanica|type=gene|length=1095bp
ATGAAGACAGCTAATGCCGCTGCCGCCGCCGCCACGCTGGCATTGTCTGC
AGCCGCCGTGCGAGGCTTTGTGCTACCCACGAGACCGATGTCGAGATCTC
AGCACCATTTGCGAAGGCCTCTGGCCTCGGTACGTCTGACTCAAGACGTC
GAGGTTCTACAATCGGTGGTCCAGGCCCCTGAAATGCAAGAAGGTAGCAG
AAGCACCAGCCCCGATCTCGATCTATTGCCCCTTACCCTCGAGCCAGCCT
CTTTCTCCATTGACCCCGCCTCCATCGAAACGCGCGTTAAACGCAAGGGG
CCGCCCCCGCCAGTGGTCGTGGCAGCAGGCGACGTGTTGGAAAGCACATG
GGTGCACCGCATGCACGTCGCAACACACTACATCGTCACCCTAGTCGCTC
TGCAGCAAGTAGCTACAAGCTATGTGGTCAAGGGCGGGGCTACCCCGGCA
GACTTGGCGATGTTGATGGCTACAATGGCATTCTCACTCGTTTTTTCTGA
TTTCTTCAGCGGAGTTTTTCACTGGTCGGTGGACAACTACGGCTCGGGTA
AGACACCTGTACTGGGGGCCGTGATAGAGGCTTTCCAGGGACATCACGAT
GCGCCTTGGACTATTACATACCGGGAATTTTGCAACAACGTGCACAAGAT
TACTAAGATAACCATTCCGGCGATGATGGCTGTGGTCCTGCTGCATCCAA
GCAACCCCCTCTTGACCCTTTTTGCGATCTTGTTTTTCAATCTGCAGGTG
CTTAGCCAGGAATTTCATAAGATCTCGCACTTGACCAAGCCCCCTGCATG
GGCCGTGATGTTGCAGGACATGGGCTTGATAATAAGCAGGAAAGAGCATG
GCCAGCATCATTCGAATCCGTTCGAGAGCAACTATTGTATTTTGACTGGG
ACGTGTAATTCCTTTTTGGATGAGAGTGGGCTCTTCCGGGTCTTGGAAAG
GGGGGTTTACGAGGTTACCGGGGTGATGCCCAACTGCTGGAAGCTGGGCG
GGCCGAAATTTCAGGCGGAGATGCTCTTGAGATCACGTGGAGGGGCGGAC
GTGGCGACGGTGGAGACGAAGAAGGAGGAGGAAAAATTGCAATAA
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protein sequence of NO01G04350.1

>NO01G04350.1-protein ID=NO01G04350.1-protein|Name=NO01G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MKTANAAAAAATLALSAAAVRGFVLPTRPMSRSQHHLRRPLASVRLTQDV
EVLQSVVQAPEMQEGSRSTSPDLDLLPLTLEPASFSIDPASIETRVKRKG
PPPPVVVAAGDVLESTWVHRMHVATHYIVTLVALQQVATSYVVKGGATPA
DLAMLMATMAFSLVFSDFFSGVFHWSVDNYGSGKTPVLGAVIEAFQGHHD
APWTITYREFCNNVHKITKITIPAMMAVVLLHPSNPLLTLFAILFFNLQV
LSQEFHKISHLTKPPAWAVMLQDMGLIISRKEHGQHHSNPFESNYCILTG
TCNSFLDESGLFRVLERGVYEVTGVMPNCWKLGGPKFQAEMLLRSRGGAD
VATVETKKEEEKLQ*
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Synonyms
Publications