NO01G04330, NO01G04330 (gene) Nannochloropsis oceanica

Overview
NameNO01G04330
Unique NameNO01G04330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1957
Alignment locationchr1:1156961..1158917 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1156961..1158917 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G04330 vs. NCBI_GenBank
Match: KXJ08485.1 (hypothetical protein AC249_AIPGENE18350 [Exaiptasia pallida])

HSP 1 Score: 65.9 bits (159), Expect = 4.900e-7
Identity = 77/341 (22.58%), Postives = 128/341 (37.54%), Query Frame = 0 
Query:  120 HGDLSPSQKEMPSNRETRCLIQDWVMKHKQLQDDMLSGEKPKRFLVVR---PDCGYCGMCNILDAITGTYLLAVLTDRALVIDWRYPGKRGWQEGTNYLDPRLVDWKAQSAVGADTFDWSGNKTLLLHGWN---------DGATIKDLLKIPEVFSET-------LDVEENEAIILVHMGQSPATSLRINPEAKKRAVAKGLLAEDTVWDEHWDQQFKGCALRVLFQPSKILKD---FYCQVQGEGSSEGIGVHVRTG----------DDRTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASEGGRRVNVERWHVASDYQQVVDDIRARFP 429
            H  +  ++K++  +   +     W  K+ +L  ++L+ ++ +R+L         G CG  N L A+   + LAVLTDRA +IDW  P     +   N+L P  + W   + +     D         H W          +G  I+D       F  T         VE+   I     G      +  NP    RA   G+    +   ++       CA   LFQ S +++     +     +     IG+H+RTG          DDR+ N +    T     F RCA+ + Q + +D               + +  +W +ASD+ +V       FP
Sbjct:   56 HHQILETKKKIEKDSHAKYCGNGWQEKYARLHSNILASKQLERYLXYNCPGTQQGCCGYGNRLRALVSIFYLAVLTDRAFLIDWIXP-----EPIENHLKPNQIQWNYSAPL-----DICEGPDFRNHYWGTASADKKRAEGWIIQDSKHFRNWFVSTNLSRYFDQPVEKITTIWYFVNG-----GIDSNPYLMTRAKQLGITPLLSPGPKY---SLIRCAFDFLFQRSNLVESHLKXWRSXLHKSKGPTIGIHIRTGDKQFNYNAQMDDRSLNLR---NTSNLKEFFRCAKHIEQTVFKD--------------AKTSDTQWFLASDHIKVKRFATKYFP 361
The following BLAST results are available for this feature:
BLAST of NO01G04330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 11
Match NameE-valueIdentityDescription
KXJ08485.14.900e-722.58hypothetical protein AC249_AIPGENE18350 [Exaiptasi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04330.1NO01G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636787gene_450Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04330.1NO01G04330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04330 ID=NO01G04330|Name=NO01G04330|organism=Nannochloropsis oceanica|type=gene|length=1957bp
CCACAGGTCCTGTTGTACCTTTCCGCCCATCTGCTTGCTTTTGGTTTTTC
CCTTTTGAACCCCCAAGAACACATAAGCAACAACATCAAGAGTCACCATG
ACCGTAGGCTACTGCCACCATTATCTTCAGTGGAGGAGAACCCCTGGGCT
CCAAGTTTTTGTATTGTCGTTCGTGACCACCATATTAATCCTTGGTGGCC
ATATTGCGTCAAAGGGCGGTGGTGTGGGAGCCATACGCGCTCTGCCACAT
GCCATATCTGATGCCCGCATTGCGTTCCTCGAGGTAACCTTTGGGGGCAG
CAGACCACTACCAAAAGCCGCCTCAGCAGAACCACAACGATCAGATGCCA
AACATACAGGGGAAAAGTTTGAGCCGGTTGCGATACTACCCAAAGCGGAG
GAAAGGCCAGCAGCAGCATCAGCAGCACCAGTAGCACCAGCACCACTGCT
CCTTCATGGAGACTTGTCCCCGTCCCAAAAAGAAATGCCGTCCAACCGAG
AAACACGGTGTCTGATCCAAGATTGGGTTATGAAGCACAAACAATTGCAA
GACGACATGCTTTCTGGGGAAAAGCCCAAACGCTTTTTGGTCGTGCGACC
CGACTGTGGATATTGCGGGATGTGCAATATATTGGATGCCATCACCGGGA
CATATTTATTGGCCGTCTTGACAGATCGTGCTTTGGTGATCGATTGGAGA
TATCCAGGCAAGCGTGGATGGCAGGAGGGCACCAATTACTTGGATCCTCG
GCTTGTGGATTGGAAGGCTCAAAGCGCCGTGGGTGCTGATACGTTTGATT
GGTCCGGAAACAAAACCCTGTTGCTGCATGGGTGGAACGATGGGGCGACA
ATCAAAGATCTGCTGAAGATTCCTGAGGTATTTAGTGAGACGTTAGATGT
TGAGGAGAATGAAGCCATCATTTTGGTGCATATGGGACAGAGTCCCGCGA
CGAGCTTGAGAATTAACCCGGAGGCCAAGAAGCGGGCAGTTGCCAAGGGG
CTCTTGGCTGAAGACACAGTGTGGGATGAACATTGGGACCAGCAGTTCAA
GGGATGTGCGTTGCGTGTATTGTTTCAACCTTCCAAAATATTGAAGGATT
TTTATTGTCAAGTGCAGGGGGAGGGGTCGTCGGAAGGGATTGGGGTGCAT
GTGAGGACGGGCGATGACCGAACCTGGAATGAAAAGTATGCTTACCCAAC
CGACGAGCATTATCGATTCGCGCGCTGTGCAGAGGGGATGCGGCAAGCCA
TGTTGGAAGATGACTTTAGAGCAATGGTTGGGGCGGTTGCTTCTGAGGGT
GGAAGGAGGGTAAATGTGGAACGGTGGCATGTGGCTTCGGATTACCAGCA
GGTGGTCGATGATATCCGGGCGCGGTTTCCCGAGCAGGCTGCGTCAATGG
ATACGTTTGAAAGCGAGGAAATGAAACAAGCAGGGGCCATCCGCGTGCAC
TATTCCAATACCCCATACCAGCAATTTGCGCTCGGGCCGTTGATGGATCT
GATCAAGTTGTCGAGTGGGCTGGCGGTGATTGGTACATGTCGAAGCACTT
ATAGTGCCGCTGCGGGCTCTTTTGGGATGCTGCCAAATGAGCTAACGCTG
TTGAAACGCACCAATTTTGAGATGAGGTACTTTCACTCGACTGCGTGTCC
GGAGATGCCGAAAGAGGATGAGGCGGAGGGGATGTGCCGCGAGCTCTTGG
AGTCAAACAGGAAGTTAGTCGAAGAGGTGTTGAGGACACCGCCATTCATC
ACTTGTCCTTTATTTGGTGAAAGTGGTGACGCTGATGATGGCGGTGGTGG
TGGTAAATATGATGATCTGAGGAGTAGGATAAATAGATGAATGGTGGGCC
TGCTATTGACTGTGGCTACTGTTGCCATGCTTCATATGCGTCGGCGTCAA
AATGATAGCATGGGTGGGTAGAAGCAGGGCACAAGAGCTAAAAAGATAAT
GTTTATA
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protein sequence of NO01G04330.1

>NO01G04330.1-protein ID=NO01G04330.1-protein|Name=NO01G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MTVGYCHHYLQWRRTPGLQVFVLSFVTTILILGGHIASKGGGVGAIRALP
HAISDARIAFLEVTFGGSRPLPKAASAEPQRSDAKHTGEKFEPVAILPKA
EERPAAASAAPVAPAPLLLHGDLSPSQKEMPSNRETRCLIQDWVMKHKQL
QDDMLSGEKPKRFLVVRPDCGYCGMCNILDAITGTYLLAVLTDRALVIDW
RYPGKRGWQEGTNYLDPRLVDWKAQSAVGADTFDWSGNKTLLLHGWNDGA
TIKDLLKIPEVFSETLDVEENEAIILVHMGQSPATSLRINPEAKKRAVAK
GLLAEDTVWDEHWDQQFKGCALRVLFQPSKILKDFYCQVQGEGSSEGIGV
HVRTGDDRTWNEKYAYPTDEHYRFARCAEGMRQAMLEDDFRAMVGAVASE
GGRRVNVERWHVASDYQQVVDDIRARFPEQAASMDTFESEEMKQAGAIRV
HYSNTPYQQFALGPLMDLIKLSSGLAVIGTCRSTYSAAAGSFGMLPNELT
LLKRTNFEMRYFHSTACPEMPKEDEAEGMCRELLESNRKLVEEVLRTPPF
ITCPLFGESGDADDGGGGGKYDDLRSRINR*
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Synonyms
Publications