NO01G04320, NO01G04320 (gene) Nannochloropsis oceanica

Overview
NameNO01G04320
Unique NameNO01G04320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1687
Alignment locationchr1:1155251..1156937 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1155251..1156937 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G04320 vs. NCBI_GenBank
Match: XP_005854237.1 (hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526] >EKU22128.1 hypothetical protein NGA_0194600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 299.3 bits (765), Expect = 1.100e-77
Identity = 139/184 (75.54%), Postives = 158/184 (85.87%), Query Frame = 0 
Query:   61 MRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQKPVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYATGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADVEDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA 245
            MR +MQT GHDAAVETALPLLFG WTL+EKR+++PLWG KPV+HAGALGI DG  S FEVLL PKGR+DQP+DSA+RGLDW L+FKDMYATGRLEFKIVHPPPDKKLIANDQIPH HYYSG FCDGL+RVEG+VERYAD+ED+KLGPIR+KVRIG+FCL K KE +  A        VAA ++A
Sbjct:    1 MRHAMQTVGHDAAVETALPLLFGSWTLEEKRVIQPLWGMKPVRHAGALGIPDGSSSTFEVLLKPKGRLDQPVDSAVRGLDWTLNFKDMYATGRLEFKIVHPPPDKKLIANDQIPHIHYYSGTFCDGLNRVEGFVERYADIEDEKLGPIRKKVRIGKFCLEKKKEEKGEAKDS----MVAASLLA 180
[Close]
BLAST of NO01G04320 vs. NCBI_GenBank
Match: EWM29384.1 (hypothetical protein Naga_100028g30 [Nannochloropsis gaditana])

HSP 1 Score: 269.2 bits (687), Expect = 1.200e-68
Identity = 131/198 (66.16%), Postives = 149/198 (75.25%), Query Frame = 0 
Query:   15 LLCVLRLLGVLVLFPNSIQAFAPPYTS----------------SLSFCSTKRRFLGDEAIDLMRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQKPVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYATGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVER 197
            LL +  L+G+  L P+  +AF P Y S                S   C T+RR   D   DLMR +MQT GHDAAVETALPLLFG WTL+EKR+++PLWG KPV+HAGALGI DG  S FEVLL PKGR+DQP+DSA+RGLDW L+FKDMYATGRLEFKIVHPPPDKKLIANDQIPH HYYSG FCDGL+RVEG+VER
Sbjct:   19 LLFLPVLMGLCTLVPDVTRAFTPLYISTPPASSPSVRHSFASPSARQCQTRRRSPWDPTHDLMRHAMQTVGHDAAVETALPLLFGSWTLEEKRVIQPLWGMKPVRHAGALGIPDGSSSTFEVLLKPKGRLDQPVDSAVRGLDWTLNFKDMYATGRLEFKIVHPPPDKKLIANDQIPHIHYYSGTFCDGLNRVEGFVER 216
The following BLAST results are available for this feature:
BLAST of NO01G04320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005854237.11.100e-7775.54hypothetical protein NGA_0194600 [Nannochloropsis ... [more]
EWM29384.11.200e-6866.16hypothetical protein Naga_100028g30 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007849NSK007849Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04320.1NO01G04320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100028g30gene1265Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04320.1NO01G04320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04320 ID=NO01G04320|Name=NO01G04320|organism=Nannochloropsis oceanica|type=gene|length=1687bp
CTTTTCAGAAAGTGACCGTGTAAACCTCCTCCCTCTTCCCCGACGTGTTT
AAATCGAATGCAAGTCGTCTGGCGGGTAGTAACAAAATGCCTCTACATGT
TCCCAGCAAGCGCCAGGCTCCAACTACTCAGGCGCCGTGTACCTTAGATT
ATACTTTCTGTGCATGATTCTGCCTCAAGCGGCGCGCACAAGGTGACTTG
CTTTAATGCTCTGACCTGGCCCTGAAATAGCGCGCGCTAAATTTTTTGCT
TTCCTCGTCATCACCCCAACGACACGCACAGTCAGTCACTTACGCTCATC
TCTCCCGACGGCCGCCTACCCACCACGACAGGCTTGGGCGCTTCGAGCTG
CTGCTAATCACTGCTTGCCCGGTCCCGAGCTGGAGAAGTTAGCTCCATGA
AGGCGACTCCGCCGCGAGGCTGTAGCTATACCACCCTCCTGCTGTGCGTG
CTAAGACTGCTGGGGGTGCTTGTCCTCTTTCCAAACTCGATCCAAGCCTT
TGCGCCGCCATACACGTCATCGTTGTCATTTTGCTCAACAAAAAGAAGAT
TTCTCGGTGACGAGGCCATCGACCTCATGCGGCGTTCGATGCAGACGGCA
GGACACGATGCCGCAGTCGAGACAGCCTTGCCTCTGCTCTTTGGCCGCTG
GACGCTTGACGAAAAGCGGTTGGTGCGGCCGTTGTGGGGACAGAAACCCG
TCAAGCATGCGGGGGCTCTGGGGATTGCCGATGGGGATGGCAGCCGGTTC
GAGGTACTCCTGCTGCCGAAAGGCCGGGTAGACCAACCACTTGACAGCGC
CTTGCGCGGTCTGGATTGGCGTCTGAGTTTTAAGGACATGTATGCGACGG
GTCGCTTGGAGTTCAAGATTGTACACCCTCCCCCAGACAAAAAGCTCATC
GCGAACGATCAGATCCCACACACGCATTACTACTCTGGAGTCTTTTGCGA
CGGTCTCGATAGGGTCGAGGGATGGGTTGAGCGGTACGCCGACGTGGAAG
ATGACAAGCTTGGCCCGATAAGGAGGAAGGTTCGGATCGGGCAGTTCTGT
CTGATGAAAGTAAAGGAAAGGGAGAAAAGTGCGAATACAGGAGGGGCAAT
GATGGCCGTGGCTGCTGGCGTTGTGGCTTAGGGTAGCGCATCCTTTTGCA
GATAGGCTGATAGTTATAGTGTACATAATTTTTGTGTGGTTGGAGACCGG
AATCAAGACATGAAGGGATAAGGGAGGATGATTGTGAGAGATTGACGTGC
CTGCTCGTAGTCAAGGATTGTACGTTATTTTTGCTGTTCATTCATCGCGC
TGTTCCAATATTTGTAGGTAAAGAGTAAAAGAAAGGTGCGAAATTGCGCA
GTCGTGACGGCAACTTTCTTATTTGCAGAATGGCACATACTGCCCATAGA
AATGAGAGTGTGGAAGGGATGATGCCATGGGTCTATGTGTGTACAGGAGA
AGACAAGACGCGCGCGATTTCCGTTGTTCGAAATAGGTCCGGTGTATATG
TAATAGGGATGTGTCTAATTTTCCATAATAATAATTATAATAACAACAAT
AATTGTTTTAATCACGATAAGAATAACAACAAGACGAAGGAAACGAATCA
GAAGAGGGACTAAACCTCATGCCGCTTGGTGGCGAGTAGGCCAGAAACAC
AAGAAGAAGAAAAAAATCTTTTTCGGAAGCAACCGGG
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protein sequence of NO01G04320.1

>NO01G04320.1-protein ID=NO01G04320.1-protein|Name=NO01G04320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MKATPPRGCSYTTLLLCVLRLLGVLVLFPNSIQAFAPPYTSSLSFCSTKR
RFLGDEAIDLMRRSMQTAGHDAAVETALPLLFGRWTLDEKRLVRPLWGQK
PVKHAGALGIADGDGSRFEVLLLPKGRVDQPLDSALRGLDWRLSFKDMYA
TGRLEFKIVHPPPDKKLIANDQIPHTHYYSGVFCDGLDRVEGWVERYADV
EDDKLGPIRRKVRIGQFCLMKVKEREKSANTGGAMMAVAAGVVA*
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Synonyms
Publications