NO01G04260, NO01G04260 (gene) Nannochloropsis oceanica

Overview
NameNO01G04260
Unique NameNO01G04260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length981
Alignment locationchr1:1140089..1141069 -

Link to JBrowse

Properties
Property NameValue
DescriptionMannose-P-dolichol utilization defect 1 protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1140089..1141069 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016817MannP-dilichol_defect-1
IPR006603PQ-loop_rpt
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO01G04260 vs. NCBI_GenBank
Match: SCV70310.1 (BQ2448_1704 [Microbotryum intermedium])

HSP 1 Score: 134.4 bits (337), Expect = 6.300e-28
Identity = 76/196 (38.78%), Postives = 121/196 (61.73%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPP-VLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMY 314
            +S  +G  I+ G ++ K+PQ  +I   +SA GLS S Y+L+T   A+ +A+++RN+FP+STYGE VF+L QNV+I+  + LYS +P  P +L LS L   L + L+    +P+  +S+L S SIPL   S++PQ+L N + +STG+L+   +  Q  G LAR+FTT  +  + +     V+  L N  +  Q ++Y
Sbjct:   47 ISKALGLAIVLGGIIVKLPQIIKIINARSARGLSLSSYLLDTASTAIVVAYNVRNSFPWSTYGENVFLLAQNVVIIGLVVLYSAEPTAPLILLLSALGLMLAYVLSSPDLLPLPHLSLLLSASIPLTLSSKVPQILENQKNRSTGQLSGFLVASQVLGCLARVFTTLTETGDRVLWWGFVMTTLMNAIIAVQMWVY 242          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: XP_001877003.1 (predicted protein [Laccaria bicolor S238N-H82] >EDR12739.1 predicted protein [Laccaria bicolor S238N-H82])

HSP 1 Score: 133.3 bits (334), Expect = 1.400e-27
Identity = 82/210 (39.05%), Postives = 123/210 (58.57%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLYLSLLAASLFFALTISPA---VPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRGQPPVRPSKEV 326
            LS  +G  I+ G  + KVPQ   I   +SA GLS S Y+LET+  A++LA+S RN FPFSTYGE +F+ +QN ++   I  Y+            +A ++F  +  + A   +P   +S+LQ  ++PL  FS++PQ+  N RT+STG+L+   +I Q AG LAR+FTT  +V + +      +A+L N  L AQ +MY G+  V  S E+
Sbjct:   44 LSKGLGIGIVVGGSVMKVPQILLIINARSARGLSFSSYILETLSYAITLAYSFRNEFPFSTYGENLFLTIQNTVVTLLILAYAPSSLRSGNKAQKIAVAIFATIATAFALYVIPSQTLSLLQMSTLPLSLFSKLPQIRQNARTQSTGQLSAVAVIAQVAGCLARLFTTATEVGDAIVSAGFALALLLNIVLGAQLYMYWGKSDVTESHEL 253          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: XP_007870565.1 (mannose-P-dolichol utilization defect 1 protein [Gloeophyllum trabeum ATCC 11539] >EPQ51137.1 mannose-P-dolichol utilization defect 1 protein [Gloeophyllum trabeum ATCC 11539])

HSP 1 Score: 133.3 bits (334), Expect = 1.400e-27
Identity = 85/201 (42.29%), Postives = 124/201 (61.69%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYS----NQPRPPVLYLSLLAASLFFALT--ISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMY 314
            +S  +G  I+ G  + KVPQ   I   +SA GLS   YVLET+  A++LA+S RNAFPFSTYGE +F+  QNV+I   I  Y+    NQ +P    L L  ASL  ALT      +P  ++++LQ  ++PL  FS++PQ++ N+R +STG+L+   ++ Q  G LAR+FTT  +V + L +    +A+L NG L AQ ++Y
Sbjct:   44 VSKGLGIGIVVGGSIMKVPQLLLILSARSARGLSLPAYVLETLAYAITLAYSFRNAFPFSTYGENLFLTAQNVLITLLIIYYAPARPNQSKP----LQLTVASLASALTGVALYTLPTDILALLQLSTLPLSLFSKLPQIMQNYRAQSTGQLSAFAVLSQIVGCLARLFTTATEVGDPLVIAGFALALLLNGVLGAQLWIY 240          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: KIJ93572.1 (hypothetical protein K443DRAFT_395672 [Laccaria amethystina LaAM-08-1])

HSP 1 Score: 132.9 bits (333), Expect = 1.800e-27
Identity = 84/213 (39.44%), Postives = 123/213 (57.75%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGI------SLYSNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRGQPPVRPSKEV 326
            LS  +G  I+ G  + KVPQ   I   +SA GLS S YVLET+  A++LA+S RN FPFSTYGE +F+ +QN ++   I      SL S+     +        +  FAL + P+ P+   S+LQ  ++PL  FS++PQ+  N R++STG+L+   ++ Q AG LAR+FTT  +V + L      +A+L N  L AQ +MY G+     S E+
Sbjct:   44 LSKVLGIGIVVGGSVMKVPQILLITNARSARGLSFSSYVLETLSYAITLAYSFRNQFPFSTYGENLFLTIQNTVVTLLILAYAPSSLRSDNRAQKITVAIFATIATAFALYVIPSQPL---SLLQMSTLPLSLFSKLPQIRQNARSQSTGQLSAVAVVAQVAGCLARLFTTATEVGDALVSAGFALALLLNIVLGAQLYMYWGESDATESYEL 253          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: XP_024336880.1 (hypothetical protein POSPLADRAFT_1183810 [Postia placenta MAD-698-R-SB12] >OSX60086.1 hypothetical protein POSPLADRAFT_1183810 [Postia placenta MAD-698-R-SB12])

HSP 1 Score: 132.5 bits (332), Expect = 2.400e-27
Identity = 86/202 (42.57%), Postives = 118/202 (58.42%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPP----VLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRGQ 317
            +S  +G  I+ G  + KVPQ   I   +SA GLS S Y LET+  A++LA+S R  FPFSTYGE +F+  QNVII   I+ YS+ PR      V   ++  A   FAL  +P  P+   ++LQ  ++PL  FS+IPQ+  NHR  STG+L+   +I Q  G LAR+FTT  +V + L      +A+L N  L  Q +MY GQ
Sbjct:   44 ISKGLGVGIVVGGSIMKVPQLLLIVSARSARGLSLSAYSLETLAYAITLAYSYRKDFPFSTYGENLFLTFQNVIITLLITYYSSHPRSAAIRRVAAATVPMALSAFALVAAPDAPL---ALLQLATLPLSLFSKIPQIRQNHRAHSTGQLSAFAVIAQIGGCLARLFTTATEVGDPLVSAGFALALLLNCVLGVQMWMYWGQ 242          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: PBK63167.1 (mannose-P-dolichol utilization defect 1 protein [Armillaria solidipes])

HSP 1 Score: 131.7 bits (330), Expect = 4.100e-27
Identity = 77/197 (39.09%), Postives = 121/197 (61.42%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRG 316
            LS  +G  I+ G  + KVPQ   + + +SA GLS   YVLET+   ++L +S+RN FPFSTYGE +F+ +QN +I   I  YS  P+      +L++A L   ++    +P  ++S LQ  ++PL  F++IPQ+  N+++KSTG+L+   +I Q  G +AR+FTT  +V + + L    +A++ NG L AQ +MY G
Sbjct:   44 LSKGVGLGIVVGGSIVKVPQIILVVKSRSAQGLSLGTYVLETLSYCITLLYSLRNDFPFSTYGENLFLTIQNALITQLIVFYSPNPQGKT---TLISAGLTAFISTLYYLPTEILSYLQIATLPLSLFAKIPQITQNYQSKSTGQLSAFAVIAQILGCIARLFTTMQEVGDPVVLAGFALALVLNGVLGAQLWMYWG 237          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: EGU11794.1 (MPU1p [Rhodotorula toruloides ATCC 204091])

HSP 1 Score: 131.0 bits (328), Expect = 6.900e-27
Identity = 75/196 (38.27%), Postives = 121/196 (61.73%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLY-LSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMY 314
            LS  +G  ++AG  + K+PQ   + R+ SA GLS S YVL+TV   +++A+++RN FP+ST+GE  F+L QN +++  I+ YS +P  P L  L +L + L +AL+ +  VP   +S LQ+++IP+   S++PQ+L N R +STG+L+   +    AG LAR+FTT  +  + L     ++  L NG +  Q  +Y
Sbjct:   55 LSKGLGLAMVAGGAILKLPQIITVVRRGSARGLSLSSYVLDTVATGITVAYNVRNGFPYSTWGEMAFLLAQNAVLIVLITSYSARPTLPRLAPLVVLFSKLAYALSNTSLVPSSTLSFLQTLTIPISLSSKVPQILSNFRNRSTGQLSAFLVFNSLAGCLARVFTTRTETNDPLLFWGFLLGALLNGVIAIQMLVY 250          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: PAV17226.1 (mannose-P-dolichol utilization defect 1 [Phellinus noxius])

HSP 1 Score: 131.0 bits (328), Expect = 6.900e-27
Identity = 85/203 (41.87%), Postives = 118/203 (58.13%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLYLSLLAASLFFALTISP-----AVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRGQ 317
            LS  +G  I+ G  + KVPQ   I R +SA GLS + YVLET+  A++LA+S RN FPFSTYGE  F+ LQN  I   I+ Y           ++ +A   F  TI+      AVP   ++ LQ  ++PL  FS++PQ+  N+R +STG L+   +I Q  G LAR+FTT  +V + L L   V+A++ N  L AQ +MY GQ
Sbjct:   44 LSKGLGLGIVLGGSIMKVPQVFIILRARSARGLSFAAYVLETLAYAITLAYSYRNGFPFSTYGENFFLTLQNAFITVLIAYYPASGLRRARGGNITSAIGTFFATIAGAFALYAVPSSTLAFLQLSTLPLSVFSKLPQITTNYRAQSTGNLSAFAVISQVLGCLARVFTTLTEVDDVLLLTGFVLALVLNCVLAAQMWMYWGQ 246          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: PBK80850.1 (mannose-P-dolichol utilization defect 1 protein [Armillaria gallica])

HSP 1 Score: 131.0 bits (328), Expect = 6.900e-27
Identity = 76/197 (38.58%), Postives = 121/197 (61.42%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMYRG 316
            LS  +G  I+ G  + KVPQ   + + +SA GLS   YVLET+   ++L +S+RN FPFSTYGE +F+ +QN +I   I  YS  P+  +   +L++A L   ++    +P  ++S LQ  ++PL  F++IPQ+  N+++KSTG+L+   +I Q  G +AR+FTT  +V + + L    +A++ N  L AQ +MY G
Sbjct:   44 LSKGVGLGIVVGGSIVKVPQIILVVKSRSAQGLSLGTYVLETLSYCITLLYSLRNDFPFSTYGENLFLTIQNALITQLIVFYSPNPQGKI---TLISAGLTAFISTLYYLPTEILSYLQIATLPLSLFAKIPQITQNYQSKSTGQLSAFAVIAQVLGCIARLFTTMQEVGDPVVLAGFALALVLNSVLGAQLWMYWG 237          
BLAST of NO01G04260 vs. NCBI_GenBank
Match: PRQ75971.1 (hypothetical protein AAT19DRAFT_12993 [Rhodotorula toruloides])

HSP 1 Score: 131.0 bits (328), Expect = 6.900e-27
Identity = 75/196 (38.27%), Postives = 121/196 (61.73%), Query Frame = 0
Query:  119 LSTFMGYTIIAGSMLFKVPQAARIFRKKSASGLSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLYSNQPRPPVLY-LSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIPQLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAMLFNGALVAQFFMY 314
            LS  +G  ++AG  + K+PQ   + R+ SA GLS S YVL+TV   +++A+++RN FP+ST+GE  F+L QN +++  I+ YS +P  P L  L +L + L +AL+ +  VP   +S LQ+++IP+   S++PQ+L N R +STG+L+   +    AG LAR+FTT  +  + L     ++  L NG +  Q  +Y
Sbjct:   55 LSKGLGLAMVAGGAILKLPQIITVVRRGSARGLSLSSYVLDTVATGITVAYNVRNGFPYSTWGEMAFLLAQNAVLIVLITSYSARPTLPRLAPLVVLFSKLAYALSNTSLVPSSTLSFLQTLTIPISLSSKVPQILSNFRNRSTGQLSAFLVFNSLAGCLARVFTTRTETNDPLLFWGFLLGALLNGVIAIQMLVY 250          
The following BLAST results are available for this feature:
BLAST of NO01G04260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
SCV70310.16.300e-2838.78BQ2448_1704 [Microbotryum intermedium][more]
XP_001877003.11.400e-2739.05predicted protein [Laccaria bicolor S238N-H82] >ED... [more]
XP_007870565.11.400e-2742.29mannose-P-dolichol utilization defect 1 protein [G... [more]
KIJ93572.11.800e-2739.44hypothetical protein K443DRAFT_395672 [Laccaria am... [more]
XP_024336880.12.400e-2742.57hypothetical protein POSPLADRAFT_1183810 [Postia p... [more]
PBK63167.14.100e-2739.09mannose-P-dolichol utilization defect 1 protein [A... [more]
EGU11794.16.900e-2738.27MPU1p [Rhodotorula toruloides ATCC 204091][more]
PAV17226.16.900e-2741.87mannose-P-dolichol utilization defect 1 [Phellinus... [more]
PBK80850.16.900e-2738.58mannose-P-dolichol utilization defect 1 protein [A... [more]
PRQ75971.16.900e-2738.27hypothetical protein AAT19DRAFT_12993 [Rhodotorula... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007858NSK007858Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04260.1NO01G04260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577337gene_442Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g37gene1271Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04260.1NO01G04260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04260 ID=NO01G04260|Name=NO01G04260|organism=Nannochloropsis oceanica|type=gene|length=981bp
ATGGCCCGAATCTTAGCGGGGCCCTTTAGCCTGGCTTGTGTTGTCGTCGC
CTTAGCAGCGAGTAGCACGACGCGAGCTTTTGCCGTGGGCCAATCCAAAA
ATTTGATGGCTTCCGCCCATGCCACTGCGCGGTCACAGATAAAAACCTCC
TCTCCTTTGTCCTCGGCCAGCTCAAGCAGCAGAAGTAGCGCTTCCATGCG
GATGATGTTGGCCATGCCCCTCAGTCGCACCGCCCTTTCCTCTACTCCTT
CAGCGTCAATCCTGCTGCCCTTTTTGCGTCAACGCGGTGGGGCAGGCTCA
ACTTCCATATCTGCCAGCCCTACTAAGGTAGGAGGTCTCGACACCTTGAC
CCTTCTAAGCACCTTTATGGGCTACACCATCATCGCCGGCTCTATGCTCT
TCAAGGTCCCGCAAGCCGCCCGCATCTTCCGCAAGAAATCAGCTTCTGGC
TTATCTTCATCCATGTATGTGCTTGAAACGGTTGGAATCGCCATGTCCCT
TGCATTCAGCATCCGCAACGCCTTTCCCTTCTCCACCTATGGCGAGGCGG
TCTTCATCCTCCTGCAAAATGTCATCATCATGAGCGGGATTTCACTCTAC
TCCAATCAACCCCGCCCCCCTGTCCTTTACCTTTCACTCCTTGCTGCCTC
TTTATTTTTTGCCTTAACGATCAGTCCTGCGGTCCCTATGGTCGTCGTCT
CGATCCTCCAAAGCATCTCAATCCCCCTCTTAAACTTCTCCCGGATCCCC
CAACTTCTCCTGAACCACCGCACAAAAAGTACGGGTGAGCTGGCCCCGTC
CACATTAATTCTTCAGGCAGCAGGCAATTTAGCAAGGATTTTCACGACCT
TTGTACAGGTGCAGAATAACCTGTTTTTGTTGTCGTGTGTGGTGGCCATG
CTCTTCAATGGGGCATTGGTTGCGCAGTTCTTCATGTACCGGGGCCAGCC
TCCAGTAAGGCCATCCAAGGAGGTGTGGTAA
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protein sequence of NO01G04260.1

>NO01G04260.1-protein ID=NO01G04260.1-protein|Name=NO01G04260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MARILAGPFSLACVVVALAASSTTRAFAVGQSKNLMASAHATARSQIKTS
SPLSSASSSSRSSASMRMMLAMPLSRTALSSTPSASILLPFLRQRGGAGS
TSISASPTKVGGLDTLTLLSTFMGYTIIAGSMLFKVPQAARIFRKKSASG
LSSSMYVLETVGIAMSLAFSIRNAFPFSTYGEAVFILLQNVIIMSGISLY
SNQPRPPVLYLSLLAASLFFALTISPAVPMVVVSILQSISIPLLNFSRIP
QLLLNHRTKSTGELAPSTLILQAAGNLARIFTTFVQVQNNLFLLSCVVAM
LFNGALVAQFFMYRGQPPVRPSKEVW*
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Synonyms
Publications