NO01G04200, NO01G04200 (gene) Nannochloropsis oceanica

Overview
NameNO01G04200
Unique NameNO01G04200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1935
Alignment locationchr1:1123357..1125291 -

Link to JBrowse

Properties
Property NameValue
DescriptionTelomeric repeat-binding factor
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1123357..1125291 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017877Myb-like_dom
Homology
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BLAST of NO01G04200 vs. NCBI_GenBank
Match: EWM29346.1 (telomeric repeat-binding factor [Nannochloropsis gaditana])

HSP 1 Score: 323.2 bits (827), Expect = 1.900e-84
Identity = 293/652 (44.94%), Postives = 343/652 (52.61%), Query Frame = 0 
Query:   16 ELLCMMDWAAHFRDHSTLQALARTSNDAGLSIPSNSVLFKRLLLAGLDEASGIAKVEEDFESVLSILTEAEGWLLRGVPGHDLFDLKLKIRRQLVLSPLRNSLPDDLDSVSMRSLATLNNERYWYLLDKIFPLETSRRASLSGSDAAGWVSPGARHEGEYRKVVEIKERKQLLDVMRGDGSPLDGDNMDMNKVLYLLKTYSKEGFLAEVGQFTRQVESKLLPDPEPFKEGGEVWNGGGGRRGREVASLLGRDPRTVLSAAGRARERLQNWSRASGLVSTEVEREATESKIRKHVHELRNAATAG--------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLQNGLRERGLLNVRGV---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARLQIEASGRSKRRQPKTHRSFWSSDEVADLKQAVLHDGMKGRWADILNSPKYLHLDFKLRTSVDLKDKWRGLERKAAAKGVTVEEVN 645
            ELL MM+WAAHFR +S L+ALA  + +AG+ + S+S +  R+ LAGL++    A  E DF +VL  L +A  WLL+ V   +LFDL+LKIRRQ+VLSPLR     + +      +A L+ ++YW LLD  FPLET+RRASLS        SPG R E  Y +VVE KERKQLLDV         G   D++KVLYLLKTYS+EGF AEV +FTR+VE++LL  PEP  E     +GGG   G      LG DPR + SA    + RL +W+R S LVS E EREATE K+R H   LR    AG                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                +L+ GL +RGLL +RG                                                                                                                     XXXXXXXXXXXXXXXXXXXXXXXXXXX             XXXXX                K RL I+ SGRSKRRQPKTHR+ WS +EV DLK+AVLHDGMKGRWADILNSP Y HLDF LRTSVDLKDKWRGLERKAA+KG+TV EV+
Sbjct:   15 ELLSMMNWAAHFRLYSELEALAYAALNAGVYLQSDSPIGHRVFLAGLEDILDKAVDEHDFAAVLDTLQDAANWLLKAVSKQELFDLRLKIRRQMVLSPLRKVFSANSEVAVPSRVADLDMDKYWTLLDGTFPLETTRRASLSAERGDSLASPGLR-ENSYERVVEAKERKQLLDV---QDETRPGGGADIHKVLYLLKTYSREGFTAEVREFTRRVEARLLEPPEPLSED---LDGGGTPSG-----ALGNDPRLLASAPAHIQRRLGDWTRTSALVSNEAEREATEVKLRAHAQILRYTLEAGQRGCPGGRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMDARHLAKNLRRSTKVLREGLSQRGLLKIRGTVEGGEGMSGAELAPGHKKRLYDATRAGRSITFEDSQYVGDDSDEEGQRAREREKSGNTAAATQSRQLARENRLAKASAAAAARLAERSNAFHQRGEHAQNQVPFPLKTRNPGEEHPXXXXXXXXXXXXXXXXXXXXXXXXXXXDTVLEADETRQGQXXXXXTKDRGGERKRTVASKRKLRLAIDNSGRSKRRQPKTHRTSWSQEEVGDLKRAVLHDGMKGRWADILNSPSYTHLDFNLRTSVDLKDKWRGLERKAASKGLTVAEVD 654
The following BLAST results are available for this feature:
BLAST of NO01G04200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29346.11.900e-8444.94telomeric repeat-binding factor [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL003nonsL003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR087ngnoR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007865NSK007865Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04200.1NO01G04200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100028g41gene1275Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04200.1NO01G04200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04200 ID=NO01G04200|Name=NO01G04200|organism=Nannochloropsis oceanica|type=gene|length=1935bp
ATGGCTCCCGCTGTCGATAATCCCTCAATCTCTGCTGCGGCGGCAGAACT
CCTGTGCATGATGGACTGGGCTGCCCACTTCCGCGACCACAGCACTCTCC
AAGCCCTTGCTAGAACATCGAACGACGCAGGTCTAAGCATTCCATCCAAT
TCTGTGCTGTTTAAAAGACTGCTGCTGGCAGGATTAGACGAAGCCTCAGG
AATTGCAAAGGTCGAGGAGGACTTCGAATCGGTGCTCTCGATACTCACGG
AGGCCGAGGGCTGGCTCCTTCGCGGCGTTCCGGGCCACGATTTGTTCGAC
CTCAAGCTCAAGATTCGACGCCAACTCGTGCTCTCCCCTCTACGCAACTC
CTTGCCCGACGACTTGGACTCGGTTTCCATGCGGTCATTGGCGACTCTGA
ACAATGAGCGGTATTGGTATCTGCTGGATAAGATATTTCCTTTGGAGACG
TCGCGTCGGGCTTCTCTTTCGGGTAGCGATGCCGCTGGCTGGGTCAGCCC
CGGTGCGCGTCACGAGGGGGAATATCGCAAGGTTGTAGAGATAAAGGAGC
GGAAGCAGTTGTTGGACGTGATGAGGGGGGATGGGAGTCCGCTAGACGGA
GACAACATGGATATGAACAAGGTGTTGTACCTGCTCAAGACTTACTCGAA
GGAGGGATTTCTTGCGGAGGTAGGGCAGTTTACGCGACAGGTTGAATCAA
AGCTCTTGCCGGATCCTGAACCTTTCAAAGAAGGAGGTGAGGTTTGGAAT
GGTGGAGGAGGGAGGAGAGGAAGAGAGGTGGCGTCGTTGTTGGGGAGAGA
CCCACGCACTGTCCTGTCAGCTGCTGGTCGGGCCCGAGAGCGGTTGCAGA
ATTGGAGTCGGGCGAGTGGATTGGTGAGCACAGAGGTAGAGAGGGAAGCG
ACAGAGAGTAAGATACGCAAGCATGTGCATGAATTGCGAAATGCTGCTAC
AGCAGGGGGCGTATCGGGAGGGAGGGGATCGGGTAGACGACGTGCAGAGC
AAGAGCAGGAGGGAGAGGAAGAGGGAGAGGAGCAAGAAGAGAGTGAGACA
GACGCCCAGCGCTTGGCTACCAATCTACGCTCAAGCACCAGAATGCTGCA
AAACGGTCTTCGGGAGCGAGGCCTGTTGAATGTGCGGGGCGTTGTGGGAG
GTGGGGGGGGGGGCGGGGGAGGAGGAAGGGCAGGAGGAGTAGGAGGGAGA
ACGACAAACAAGAAGAAGCGTCTGAATGACCCGACGCGAAAGGGGCGCTT
GATCACGTTTGAGGACAGTCAGTATGCGGGATCAGAGAGCAGCACTGGCG
GGGAGGAAGAGGAGGACAATGTGTCTGTGTCGGAATCTCGGCGACAGGCA
GCGGCCCGGCAACGGCGCACGCAGACAGCAGCAGCAGCAGCAGCAGCCGC
TGCTCGTTTGGCGGACCGCCGCAAAAAGAGTCAGAGGGGCAAGCCGGCTG
CTCTACCCCCTATGTCGGGCGAGCGGTGCCGGGACGTTGGAGAGGAAGCA
GAGGAGGAAGAGATGGCGGGAGAAAGAGACGAGGAGCAGGAGGAGATTCG
TAGCACAACTGAGAGTAGCAGCAGCAGCAGTGGCAGTGAGGAAGAGGACG
AAGAGCGGGAGCGTATCAGAGCACTAAAGCGGGGTGGAGGCAGGCGGGTC
CTGGCAGCAAAAAGGAAAGCTCGCTTGCAGATCGAGGCCTCCGGGCGCAG
CAAGCGTCGGCAGCCCAAGACGCACCGCTCGTTTTGGTCGTCGGACGAGG
TAGCCGATTTGAAACAGGCAGTGTTGCATGATGGAATGAAAGGGCGATGG
GCGGATATTCTAAACAGTCCCAAGTACCTTCATTTGGACTTTAAGCTACG
GACGAGTGTGGATCTGAAGGATAAATGGCGGGGTTTGGAGCGCAAGGCGG
CGGCCAAGGGAGTGACGGTGGAGGAGGTGAATTAA
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protein sequence of NO01G04200.1

>NO01G04200.1-protein ID=NO01G04200.1-protein|Name=NO01G04200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MAPAVDNPSISAAAAELLCMMDWAAHFRDHSTLQALARTSNDAGLSIPSN
SVLFKRLLLAGLDEASGIAKVEEDFESVLSILTEAEGWLLRGVPGHDLFD
LKLKIRRQLVLSPLRNSLPDDLDSVSMRSLATLNNERYWYLLDKIFPLET
SRRASLSGSDAAGWVSPGARHEGEYRKVVEIKERKQLLDVMRGDGSPLDG
DNMDMNKVLYLLKTYSKEGFLAEVGQFTRQVESKLLPDPEPFKEGGEVWN
GGGGRRGREVASLLGRDPRTVLSAAGRARERLQNWSRASGLVSTEVEREA
TESKIRKHVHELRNAATAGGVSGGRGSGRRRAEQEQEGEEEGEEQEESET
DAQRLATNLRSSTRMLQNGLRERGLLNVRGVVGGGGGGGGGGRAGGVGGR
TTNKKKRLNDPTRKGRLITFEDSQYAGSESSTGGEEEEDNVSVSESRRQA
AARQRRTQTAAAAAAAAARLADRRKKSQRGKPAALPPMSGERCRDVGEEA
EEEEMAGERDEEQEEIRSTTESSSSSSGSEEEDEERERIRALKRGGGRRV
LAAKRKARLQIEASGRSKRRQPKTHRSFWSSDEVADLKQAVLHDGMKGRW
ADILNSPKYLHLDFKLRTSVDLKDKWRGLERKAAAKGVTVEEVN*
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Synonyms
Publications