NO01G04180, NO01G04180 (gene) Nannochloropsis oceanica

Overview
NameNO01G04180
Unique NameNO01G04180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1325
Alignment locationchr1:1118726..1120050 +

Link to JBrowse

Properties
Property NameValue
Description23s rrna methyltransferase j
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1118726..1120050 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0016740transferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035920YhbY_like_sf
IPR001890RNA-binding_CRM
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Homology
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BLAST of NO01G04180 vs. NCBI_GenBank
Match: EWM29353.1 (23s rrna methyltransferase j [Nannochloropsis gaditana])

HSP 1 Score: 163.7 bits (413), Expect = 6.300e-37
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 0 
Query:  103 FKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHELVNIRVLFAAKKKEAKTVGEAMAEAVSAELVQVIGHTYLLFKPGNPPRIDMVRLTT 207
            FKGKHRRALR+LAGRKKA+KSLFTMQQSE+PP + F IEVE+ALRAHELVN+RVLFA KKKEAK VG  MAEAV AELVQVIGHTYLL++P +PP+ID+ RLTT
Sbjct:  102 FKGKHRRALRALAGRKKANKSLFTMQQSESPPIEGFCIEVESALRAHELVNVRVLFAQKKKEAKAVGLLMAEAVKAELVQVIGHTYLLYRPADPPKIDLARLTT 205
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BLAST of NO01G04180 vs. NCBI_GenBank
Match: EJK46457.1 (hypothetical protein THAOC_34873 [Thalassiosira oceanica])

HSP 1 Score: 67.0 bits (162), Expect = 8.000e-8
Identity = 44/118 (37.29%), Postives = 68/118 (57.63%), Query Frame = 0 
Query:  105 GKHRRALRSLAGRKKADKSLFTM---------QQSETPPS--------DRFRIEVETALRAHELVNIRVL-FAAKKKEAKTVGEAMAEAVSAELVQVIGHTYLLFKPGNPPRIDMVRL 205
            GK RRA+RS+ GR+K++ ++  +         ++ +   S         RF   V+ AL  HE+V +R+     KKK AK VGE +A+ + A L QV+GHT LL++PG PPR+++  L
Sbjct:  300 GKKRRAIRSIVGRQKSEGTVHEVAWPRDHAISKEDKVDQSFAERVAIDHRFLERVDEALWDHEIVLLRLKNVVQKKKGAKIVGERVAKILDAHLAQVVGHTALLYRPGFPPRLNLDEL 417
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BLAST of NO01G04180 vs. NCBI_GenBank
Match: OEU07842.1 (dCMP_cyt_deam_1-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 67.0 bits (162), Expect = 8.000e-8
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = 0 
Query:  105 GKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIE---------------VETALRAHELVNIRVLFA-AKKKEAKTVGEAMAEAVSAELVQVIGHTYLLFKPGNPPRIDMVRLT 206
            G HRRALR++AGRKK D +L  +  +    +++ + E               ++  L   ELVN+R+  A  KKK AK +GE +A ++ A + QVIGHT LL++PG P  +D+  L+
Sbjct:  266 GGHRRALRTIAGRKKTDNTLNQISWNTKGRTEKAKNEEATDGLALPAEWMENLDAVLWRDELVNLRLNKAVGKKKLAKHLGERIAASLGAHVAQVIGHTVLLYRPGMPAVLDLDALS 382
The following BLAST results are available for this feature:
BLAST of NO01G04180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM29353.16.300e-3779.8123s rrna methyltransferase j [Nannochloropsis gadi... [more]
EJK46457.18.000e-837.29hypothetical protein THAOC_34873 [Thalassiosira oc... [more]
OEU07842.18.000e-837.61dCMP_cyt_deam_1-domain-containing protein [Fragila... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL003nonsL003Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR087ngnoR087Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007862NSK007862Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04180.1NO01G04180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G04180.2NO01G04180.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|242544gene_434Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100028g40gene1274Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04180.1NO01G04180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G04180.2NO01G04180.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04180 ID=NO01G04180|Name=NO01G04180|organism=Nannochloropsis oceanica|type=gene|length=1325bp
CCACAGGCTCCCGTCGAGTTCCGTTGGTTCCCCTTCCAGCGACTACATGA
TGAAGTCCAGCGGGAGGCTCCTAATGCTTTTTCTCTGCTTCATGCTTCAA
TTGGCCAGCTTGGTGGCCTTCGCGGGACCCGCCGCGCCAGCTGCGGCTGT
GTCCCGGTCAAGACGAGGAGGCTTCATGCAGGTGGCGTCATCAGgtatgt
gtgcatgggtgggtggcatgtgtgatagcgcaaagatcgagtttatcgtg
aggtaagccacttactcagatgcttgttatgtttacaaacttagGGATCG
CGCGATTTGGTTCAATCTTGACTACCTCCCGACTCTTGGCTGCCCCGACC
GGGGACGATGAGGAAGATGACGATGAGAATGACGGCTACGGTAGTACCAG
CAGCCGCGGCAGTGCGGTCTCTTCCTCCTCGGTTGCTATATTTTCCTCGA
CTTTCAAGGGCAAACATCGGCGCGCCCTGCGGTCACTGGCAGgtacggtt
gtttatggatgctactactaccagaatttcttctctgtatgcttgcttat
ttctctactcgctcgtttagaatgactaacgtacccttttgttttaattc
ctcttaagcgcatgtcctatcactggaatgctttcatccataaatgaatc
ggccgtgttctcatctgtctgctcgatccttgcggaagtaccgagcctgc
agatcgtgcactcacccgcctatcccctctcgccttgcccctctcactgt
ctcacattattcgtgcgctatccataacgcagGGCGCAAAAAGGCGGACA
AATCCCTTTTCACCATGCAGCAGTCTGAAACTCCGCCATCCGATCGGTTT
CGCATCGAGGTCGAGACCGCATTACGAGCCCACGAGCTGGTTAGTGCGAT
TGGTTGGATGGGAAAGGGAGGCACGGGGAACCTCTCCGGACTAGGCTGAG
GGAGAAAATAAAAATATCATGGTAGTCCTACTTAGATATTGCGCGTGCAG
ACGTCAGTGGCGTTGTGTAAGCGTCTCTCATTTCACATTTTCTGTTTTTT
GTCTATCGCTCCTCCGCCTGTAGGTAAATATCCGCGTGCTCTTCGCTGCT
AAAAAGAAAGAGGCAAAAACTGTCGGGGAGGCTATGGCAGAGGCCGTCAG
CGCGGAGTTGGTGCAAGTGATTGGTCATACCTACCTTCTCTTTAAACCAG
GGAACCCTCCAAGGATAGACATGGTAAGGCTTACCACGGAGGCTCCTCCT
GAGTAGTTGGGTCCATAGCAGGGAGGATAGGAGACTTCGAATATGCCAAA
AAAGTAAATTAAAGTATTATGCGCA
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protein sequence of NO01G04180.1

>NO01G04180.1-protein ID=NO01G04180.1-protein|Name=NO01G04180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MMKSSGRLLMLFLCFMLQLASLVAFAGPAAPAAAVSRSRRGGFMQVASSG
IARFGSILTTSRLLAAPTGDDEEDDDENDGYGSTSSRGSAVSSSSVAIFS
STFKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHE
LVNIRVLFAAKKKEAKTVGEAMAEAVSAELVQVIGHTYLLFKPGNPPRID
MVRLTTEAPPE*
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protein sequence of NO01G04180.2

>NO01G04180.2-protein ID=NO01G04180.2-protein|Name=NO01G04180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MMKSSGRLLMLFLCFMLQLASLVAFAGPAAPAAAVSRSRRGGFMQVASSG
IARFGSILTTSRLLAAPTGDDEEDDDENDGYGSTSSRGSAVSSSSVAIFS
STFKGKHRRALRSLAGRKKADKSLFTMQQSETPPSDRFRIEVETALRAHE
LVSAIGWMGKGGTGNLSGLG*
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Synonyms
Publications