NO01G04140, NO01G04140 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G04140 vs. NCBI_GenBank
Match: XP_005854119.1 (zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526] >EKU22240.1 zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 462.6 bits (1189), Expect = 2.400e-126 Identity = 265/604 (43.87%), Postives = 351/604 (58.11%), Query Frame = 0 Query: 19 TGRVPKKFRRSCDRCTSKKIRCDGLAACENCVRRGYACHYSQRRRTGPKIRTAADEHPEWRAAATPNGLVPWLSNTIGSA---------ASAAVTCAGPNVGSGGSSXXXXXXXXXXXXXXXXXXXXXXXXXVGHV---LQKAQFP-PXXXXXXXXXXXXXXXXXXXXXXXXXNMFHSIQISPASLLPAXXXXXXXXXXXXXXXXXXXXXXXPPLAPNLY-AHLHQEGASSTPM---IGSCEEKFMNVFLAELNAFLPIADKDMLLSSLANLRANGKHALPPSTLIPLLASLPPQTTESLQEVQLQNAHNAMVWAGIAIGAMLQGETGNMERYTTLAWLSMKECFDFPSPATVSAYLMMAFVYMMFGELDRFRRYCSMAEGIASALGPTLSNEMEVTLLYVRVGQNPDVRVLESQWEEMSTMDVPTECAHMQMIYLVTRAKLYLLHNRYRGDACERQGLPRIPIDFDRVLPDLEMADCLLSVGPAASAATAVGFVRSMRAIFNYIKSRGKDTEEALATMQPVLNHAMRCPGMVKILPNFHFLHVMAMLLFVAGRKETYETVQGLTSTSWGTCASVPPWGRNLDDLCTHPLCAAALLTTHEGRRR 606 T R KK RRSCDRCTSKKIRCDGLAAC+NCVRRGYACHYS+RRRTGPKIRTAAD+HPE + ++ +GL+PW ++ SA AS A+ N S V H+ + P P + + SP L P L P + + L E + + +G+ EE F+ +FLAE+NAFLP+ D+ ++L L+ +R G+ ALPP T PLL S+PP+ ++ QL+N +NA VWAGIA+GA+L T ++ERYT LAW SMKECFD PATVSA L MA VYMM G+ R+RRY SMAE IA ALGP+LS E+E LLY+RVG +P +R+LE+QW+E+ +D+ ++ AH+QMIYL+ R KL LL N+ RG E QG+PR P D+V P LE AD LL + PAAS+A A+ ++R +R I + +RGK + L MQP+L A+RCPG+V+I PNFH H MA+ ++ G KE YE+ + T+ ++G CA VPPWG +LD+LC H +C L T E R+R Sbjct: 5 TDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISTNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHPMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMEL-------------REQILLTNEGQHFPKLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSQVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGPSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVDMSSKSAHIQMIYLLARTKLQLLRNQLRG---ELQGIPR-PFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQR 591
BLAST of NO01G04140 vs. NCBI_GenBank
Match: EWM29352.1 (zn 2cys6 transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 457.6 bits (1176), Expect = 7.700e-125 Identity = 262/605 (43.31%), Postives = 354/605 (58.51%), Query Frame = 0 Query: 17 MATGRVPKKFRRSCDRCTSKKIRCDGLAACENCVRRGYACHYSQRRRTGPKIRTAADEHPEWRAAATPNGLVPWLSNTIGSA---------ASAAVTCAGPNVGSGGSSXXXXXXXXXXXXXXXXXXXXXXXXXVGHVLQKAQFPPXXXXXXXXXXXXXXXXXXXXXXXXXNMFHS---IQISPASLLPAXXXXXXXXXXXXXXXXXXXXXXXPPLAPNLY-AHLHQEGASSTPM---IGSCEEKFMNVFLAELNAFLPIADKDMLLSSLANLRANGKHALPPSTLIPLLASLPPQTTESLQEVQLQNAHNAMVWAGIAIGAMLQGETGNMERYTTLAWLSMKECFDFPSPATVSAYLMMAFVYMMFGELDRFRRYCSMAEGIASALGPTLSNEMEVTLLYVRVGQNPDVRVLESQWEEMSTMDVPTECAHMQMIYLVTRAKLYLLHNRYRGDACERQGLPRIPIDFDRVLPDLEMADCLLSVGPAASAATAVGFVRSMRAIFNYIKSRGKDTEEALATMQPVLNHAMRCPGMVKILPNFHFLHVMAMLLFVAGRKETYETVQGLTSTSWGTCASVPPWGRNLDDLCTHPLCAAALLTTHEGRRR 606 + T R KK RRSCDRCTSKKIRCDGLAAC+NCVRRGYACHYS+RRRTGPKIRTAAD+HPE + ++ +GL+PW ++ SA AS A+ N S V H+ + F + +S ++ P S + P L P + + L E + + +G+ EE F+ +FLAE+NAFLP+ D+ ++L L+++R G+ ALPP T PLL S+PP+ ++ QL+N +NA VWAGIA+GA+L T ++ERYT LAW SMKECFD PATVSA L MA VYMM G+ R+RRY SMAE IA ALG +LS E+E LLY+RVG +P +R+LE+QW+E+ +++ ++ AH+QMIYL+ R KL LL N+ RG E QG+PR P D+V P LE AD LL + PAAS+A A+ ++R +R I + +RGK + L MQP+L A+RCPG+V+I PNFH H MA+ ++ G KE YE+ + T+ ++G CA VPPWG +LD+LC H +C L T E R+R Sbjct: 3 LPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHI--EDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPM----------ELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRG---ELQGIPR-PFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQR 591
BLAST of NO01G04140 vs. NCBI_GenBank
Match: CBN75539.1 (hypothetical protein Esi_0114_0079 [Ectocarpus siliculosus]) HSP 1 Score: 84.3 bits (207), Expect = 1.800e-12 Identity = 87/385 (22.60%), Postives = 165/385 (42.86%), Query Frame = 0 Query: 246 FMNVFLAELNAFLPIADKDMLLSSLANLRANGKHALPPSTLIPLLASLPPQTTESLQEVQLQNAHNAMVWAGIAIGAMLQGETGNMERYTTLAWLSMKECFDFPSPATVSAYLMMAFVYMMFGELDRFRRYCSMAEGIASALGPTLSNEMEVTLLYVRVGQNPDVRVLESQWEEMSTMDVPTECAHMQMIYLVTRAKLYLLHNRYRGDACERQGLPRIPIDFDRVLPDLEMADCLLSVGPAASAATAVGFVRSMRAIFNYIKSRGKDTEEALATMQPVLNHAMRCPGMVKILPNFHFLHVMAMLLFVAGRKETYETVQGLTST------------SWG-----TCASVPP----WGRNLDDLCTHPLCAAALLTTHEGRRRRLAS 610 ++N FL E NAF+P+ +D+L + L P+ A+L ++ +E + QNA A++ I IGA+L+G T + Y ++ FDF S T+SAY++ A+ + + G R Y A+ +A+ L P ++ + E+ + RV L + + + C Q++ ++T A LY L + + ++ + + +LP L AD + ++ A V V+ + A YI R +++ L ++PV+ PG+++ + +H + ++ G + YE + + ++ WG PP + LC++P+C A EG +A+ Sbjct: 108 YLNFFLKEFNAFVPLTTQDILRDA----------------LYPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHT-QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQL-PQVTVDHELVFQFYRVCSEVHNCTLSAIPKLLQHAGAAAPC--YQVLNVLTYA-LYDLAHLAAEELTNTISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLA---YILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAA 468
BLAST of NO01G04140 vs. NCBI_GenBank
Match: CBN75534.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 80.1 bits (196), Expect = 3.400e-11 Identity = 85/385 (22.08%), Postives = 163/385 (42.34%), Query Frame = 0 Query: 246 FMNVFLAELNAFLPIADKDMLLSSLANLRANGKHALPPSTLIPLLASLPPQTTESLQEVQLQNAHNAMVWAGIAIGAMLQGETGNMERYTTLAWLSMKECFDFPSPATVSAYLMMAFVYMMFGELDRFRRYCSMAEGIASALGPTLSNEMEVTLLYVRVGQNPDVRVLESQWEEMSTMDVPTECAHMQMIYLVTRAKLYLLHNRYRGDACERQGLPRIPIDFDRVLPDLEMADCLLSVGPAASAATAVGFVRSMRAIFNYIKSRGKDTEEALATMQPVLNHAMRCPGMVKILPNFHFLHVMAMLLFVAGRKETYETVQGLTST------------SWG-----TCASVPP----WGRNLDDLCTHPLCAAALLTTHEGRRRRLAS 610 ++N FL E NAF+P+ +D+L +L P+ A+L ++ +E + QNA A++ I IGA+L+G T + Y ++ F F S +AY++ A+ + + G R Y A+ +A+ L P ++ + E+ + RV L + + + C Q++ ++T A LY L + + ++ + + +LP L AD + ++ A V V+ + A YI R +++ L ++PV+ PG+++ + +H H + ++ G + YE + + ++ WG PP + LC++P+C A EG +A+ Sbjct: 106 YLNFFLKEFNAFVPLTTQDILRDALN----------------PVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQGV-GYLRNVREALTNSFHFVSSQKKNAYMVTAYCHDLMGNAAATRNYMEFAKAVATQL-PQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPC--YQVLNVLTYA-LYDLAHLAAEELTNTISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLA---YILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAA 466
BLAST of NO01G04140 vs. NCBI_GenBank
Match: EWM22661.1 (c6 transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 65.5 bits (158), Expect = 8.600e-7 Identity = 29/49 (59.18%), Postives = 37/49 (75.51%), Query Frame = 0 Query: 24 KKFRRSCDRCTSKKIRCDG-LAACENCVRRGYACHYSQRRRTGPKIRTA 72 K+FR+SCD CT+ KIRCDG CENC +R ACHYS+++R GPK+ A Sbjct: 394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNA 442 The following BLAST results are available for this feature:
BLAST of NO01G04140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G04140 ID=NO01G04140|Name=NO01G04140|organism=Nannochloropsis oceanica|type=gene|length=3337bpback to top protein sequence of NO01G04140.1 >NO01G04140.1-protein ID=NO01G04140.1-protein|Name=NO01G04140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=783bpback to top Synonyms
Publications
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