NO01G04120, NO01G04120 (gene) Nannochloropsis oceanica

Overview
NameNO01G04120
Unique NameNO01G04120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3009
Alignment locationchr1:1100479..1103487 +

Link to JBrowse

Properties
Property NameValue
DescriptionSignal recognition particle-docking protein FtsY
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1100479..1103487 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006614SRP-dependent cotranslational protein targeting to membrane
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036225SRP/SRP_N
IPR027417P-loop_NTPase
IPR004390SR_rcpt_FtsY
IPR003593AAA+_ATPase
IPR013822Signal_recog_particl_SRP54_hlx
IPR000897SRP54_GTPase_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Homology
BLAST of NO01G04120 vs. NCBI_GenBank
Match: EWM29383.1 (signal recognition particle-docking protein FtsY [Nannochloropsis gaditana])

HSP 1 Score: 707.2 bits (1824), Expect = 3.800e-200
Identity = 391/495 (78.99%), Postives = 422/495 (85.25%), Query Frame = 0
Query:    1 MLQCCRLLLPLCLLP---LLISAFVNPSFGATSSFLDDGRRCTLR-PSYYIVDDSSS----GGPRPRRQGHADMMVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAEKLEPDDVKSVLRLRLIEALSVQDRALQL-ASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLGYEPEYALALESRLQGMVKGKLIKPKGGVLVRSVTASSTGNNADAEDIADRMARKVAGQRGQ 487
            MLQ   LLLPL +LP      +AFV P  G   S+  DGR+  +  P Y  +D+  S       R RRQG + MMVFDFIRKRAEEGIQQVQNIATKTAEGKF EAL DTASYVKKRQEIDAENL KLQEGLAKSRQRLMGDLD IFG SED+GLT+TL+KLEEVLMM+DIGAATT +I+DDLR VAKAEKLEPDDVKSVLRLRLIEAL+ +DR++QL   A A  GK+YP+VLFVIGANGMGKTTTIGKIASRL  EANQSVLVAACDTFRAAAVDQLEEWT RAGVDIH+PGEG+TKPAPVL+ AI+KAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIAD IPGGP ETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGI+DLRDFNPEDFVDALLGYEPE  LALE+RLQ MV+GKLIKPK GV+VRS        N DA+DI+DRM RKV G+ GQ
Sbjct:    1 MLQYHLLLLPLLMLPWAGWTQAAFVTPRVGGPRSY-GDGRKYRVGVPFYSSIDEVDSPIYTTASRSRRQGESHMMVFDFIRKRAEEGIQQVQNIATKTAEGKFVEALGDTASYVKKRQEIDAENLAKLQEGLAKSRQRLMGDLDVIFGVSEDVGLTKTLDKLEEVLMMSDIGAATTGEIIDDLRMVAKAEKLEPDDVKSVLRLRLIEALTAKDRSMQLKKEASAGNGKSYPRVLFVIGANGMGKTTTIGKIASRLKNEANQSVLVAACDTFRAAAVDQLEEWTVRAGVDIHRPGEGQTKPAPVLEEAISKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADGIPGGPHETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGYEPEQVLALEARLQDMVQGKLIKPKRGVIVRS-EGGGGDKNMDADDISDRMRRKVQGRGGQ 493          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: XP_005854120.1 (fused signal recognition particle receptor [Nannochloropsis gaditana CCMP526] >EKU22241.1 fused signal recognition particle receptor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 595.1 bits (1533), Expect = 2.100e-166
Identity = 316/369 (85.64%), Postives = 338/369 (91.60%), Query Frame = 0
Query:   97 EALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAEKLEPDDVKSVLRLRLIEALSVQDRALQL-ASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLGYEPEYALALESRLQGMVKGKLIKPKGGVLVRSVTASSTG 465
            E  T++ASYVKKRQEIDAENL KLQEGLAKSRQRLMGDLD IFG SED+GLT+TL+KLEEVLMM+DIGAATT +I+DDLR VAKAEKLEPDDVKSVLRLRLIEAL+ +DR++QL   A A  GK+YP+VLFVIGANGMGKTTTIGKIASRL  EANQSVLVAACDTFRAAAVDQLEEWT RAGVDIH+PGEG+TKPAPVL+ AI+KAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIAD IPGGP ETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGI+DLRDFNPEDFVDALLGYEPE  LALE+RLQ MV+GKLIKPK G      T S+TG
Sbjct:    4 EENTESASYVKKRQEIDAENLAKLQEGLAKSRQRLMGDLDVIFGVSEDVGLTKTLDKLEEVLMMSDIGAATTGEIIDDLRMVAKAEKLEPDDVKSVLRLRLIEALTAKDRSMQLKKEASAGNGKSYPRVLFVIGANGMGKTTTIGKIASRLKNEANQSVLVAACDTFRAAAVDQLEEWTVRAGVDIHRPGEGQTKPAPVLEEAISKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADGIPGGPHETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGIDDLRDFNPEDFVDALLGYEPEQVLALEARLQDMVQGKLIKPKRG------TISATG 366          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: CBJ31918.1 (PFtsY, plastid signal recognition particle receptor [Ectocarpus siliculosus])

HSP 1 Score: 386.3 bits (991), Expect = 1.500e-103
Identity = 211/375 (56.27%), Postives = 267/375 (71.20%), Query Frame = 0
Query:   70 DFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAE--KLEPDDVKSVLRLRLIEAL------SVQDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLGYEPEYALALES 437
            DFI+KRA+EG++Q QN+ T    G+  EAL +T++YVK R         K  +GLA+SR R +GDL+++FG +    L +TL KLEE L+ AD+GA T+ QI++DLR  AKAE  +LEPDD+KSVLR  LI+ L      S +      A   A      P VLF +GANGMGKTTT+GK+ASRL ++  Q VL+AA DTFRAAAV+QL EW ER+G DI  P + + +P  V+  A  KA+   YDVLIVDTSGRLSNN +LNEELK +K+ ++DRIPG P +TLLV+D +VGRN VDQA+ W +EVGI+ LV+TKLDGTARGG VVSIV D+GVPVKLIGVGE + DLRDF P  FVD+LLGY PE A  L++
Sbjct:   98 DFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRN-------AKFSDGLAQSRLRFVGDLENLFGMAGP--LEETLEKLEEALLQADLGATTSFQIIEDLRNTAKAEDRRLEPDDIKSVLRATLIQVLNGGTMPSAEGGGDTAAITFADPSLGVPSVLFFMGANGMGKTTTVGKVASRLREDGGQKVLLAAADTFRAAAVEQLNEWAERSGADIVVPLDKDERPPSVVARAAEKAVSEGYDVLIVDTSGRLSNNYSLNEELKDMKKALSDRIPGAPHDTLLVVDASVGRNAVDQARTWKQEVGISALVVTKLDGTARGGFVVSIVSDLGVPVKLIGVGESLYDLRDFEPVLFVDSLLGYSPEDASRLQA 463          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: CEM32712.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 349.0 bits (894), Expect = 2.600e-92
Identity = 193/413 (46.73%), Postives = 267/413 (64.65%), Query Frame = 0
Query:   56 PRPRRQG----------HADMMVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAEKLEPDDVKSVLRLRLIEALSVQDRALQLASAPAV--EGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEG--------DYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLGYEPEYALALESRLQGMVKGKLIK 449
            P PRR+           H   M+ DFI+++A+E I ++  +                            ENL K QEGL+KSR RL+  L  +FG   ++ L + L +LEE+L+ ADIG ATT  IL DLRA A+ EK++P+D+K VLR +++E L +     +   +P+      +   V  V+GANGMGKTTTIGK+A+RL  E  + VLVAACDTFRAAAVDQLEEW  RA VDIH+P EGET+P  V++ A+ +A+           YDV+IVDT+GRL+NNV LNEEL+K+ +  + R+P  P E LLV+D ++GRN V+QA++W  ++G+TGLV+TKLDGTAR G VVS+VRD+ +PVKL+GVGE + DLRDF+ E++VDAL GY P+ A  LE R+  +++ +  K
Sbjct:   52 PLPRRRATRPYARRPTHHQPSMILDFIQRKAQEDIDKLSKV---------------------------GENLQKFQEGLSKSRDRLLASLSGLFG-MVNLELEEALEQLEEILLSADIGTATTADILTDLRATARGEKIDPEDIKMVLRGKILEVLRMGTDKGETTESPSALRYSPDGLTVWMVMGANGMGKTTTIGKLAARLRGEGKR-VLVAACDTFRAAAVDQLEEWANRAQVDIHRPQEGETEPWKVVEAALDEALTPLPDESGRLPYDVMIVDTAGRLANNVDLNEELEKMVKVTSKRLPAAPAEILLVVDASIGRNAVEQARIWQEDIGVTGLVVTKLDGTARAGFVVSVVRDLNLPVKLVGVGEKLEDLRDFDAENYVDALFGYNPQQARLLEERMGALMRERAEK 435          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: GAX21145.1 (fused signal recognition particle receptor [Fistulifera solaris])

HSP 1 Score: 326.2 bits (835), Expect = 1.800e-85
Identity = 181/375 (48.27%), Postives = 251/375 (66.93%), Query Frame = 0
Query:   67 MVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKA--EKLEPDDVKSVLRLRLIEALSV-QDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIP-------------GGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLG 426
            MVFDF + R +EGI Q+ N+A   ++G+  + L D ASY  +R +  A       EGL+KSR R +  L+ +F     I   + + +LE+VL+ AD+G AT E I+ +++++ ++  ++L  +D+ S++R +++EAL   Q R +Q +  P     N P VLF++GANGMGKTTTIGK+A RL  E NQ+VLVAACDTFRA AV QL++W +RA VD+  P +    PA VL +A+ KA+   YD L+VDTSGRLSNN AL +EL K+KR I  R+                P ETLLV+D A GR  +D A+VWN+E+G+TGL++TKLDG+ARGG VV++ RD+ +PVKLIGVGEG+ DLRDF P+ FVD LLG
Sbjct:   38 MVFDFFKDRTKEGIDQLNNLAKSASQGQLGKGLADVASYTNERNKAFA-------EGLSKSRNRFLDRLEFLF---TGIDPEEMMQELEDVLLQADLGIATAEDIVQEVQSLRESSRQRLSREDLMSIMRGKILEALETEQSRMIQFSQDP-----NLPTVLFILGANGMGKTTTIGKLAHRLRTEGNQTVLVAACDTFRAGAVAQLQQWADRAQVDLVGPTDTVKSPAAVLYSALDKAVLEKYDTLLVDTSGRLSNNEALTQELVKMKRVIQKRLSQQNNEKGFPIPNMNVPHETLLVIDAAQGRMALDSAQVWNKEIGLTGLILTKLDGSARGGSVVAVSRDLQLPVKLIGVGEGMEDLRDFEPDGFVDGLLG 397          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: GAX15342.1 (fused signal recognition particle receptor [Fistulifera solaris])

HSP 1 Score: 325.9 bits (834), Expect = 2.400e-85
Identity = 181/375 (48.27%), Postives = 251/375 (66.93%), Query Frame = 0
Query:   67 MVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKA--EKLEPDDVKSVLRLRLIEALSV-QDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIP-------------GGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLG 426
            MVFDF + R +EGI Q+ N+A   ++G+  + L D ASY  +R +  A       EGL+KSR R +  L+ +F     I   + + +LE++L+ AD+G AT E I+ +++++ ++  ++L  +D+ S++R +++EAL   Q R +Q +  P     N P VLF++GANGMGKTTTIGK+A RL  E NQ+VLVAACDTFRA AV QL++W +RA VDI  P +    PA VL +A+ KA+   YD L+VDTSGRLSNN AL +EL K+KR I  R+                P ETLLV+D A GR  +D A+VWN+E+G+TGL++TKLDG+ARGG VV++ RD+ +PVKLIGVGEG+ DLRDF P+ FVD LLG
Sbjct:   36 MVFDFFKDRTKEGIDQLNNLAKSASQGQLGKGLADVASYTNERNKAFA-------EGLSKSRNRFLDRLEFLF---TGIDPEEMMQELEDILLQADLGIATAEDIVQEVQSLRESSRQRLSREDLMSIMRGKILEALETEQSRMIQFSQDP-----NLPTVLFILGANGMGKTTTIGKLAHRLRIEGNQTVLVAACDTFRAGAVAQLQQWADRAQVDIVGPTDTVKSPAAVLYSALDKAVLEKYDTLLVDTSGRLSNNEALTQELVKMKRVIQKRLSQETNEDGNLVPNMNVPHETLLVIDAAQGRMALDSAQVWNKEIGLTGLILTKLDGSARGGSVVAVSRDLQLPVKLIGVGEGMEDLRDFEPDGFVDGLLG 395          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: XP_009040860.1 (hypothetical protein AURANDRAFT_32555 [Aureococcus anophagefferens] >EGB04473.1 hypothetical protein AURANDRAFT_32555 [Aureococcus anophagefferens])

HSP 1 Score: 313.9 bits (803), Expect = 9.300e-82
Identity = 183/371 (49.33%), Postives = 236/371 (63.61%), Query Frame = 0
Query:   95 FAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAE-KLEPDDVKSVLRLRLIEALS-VQDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAI----------------------EGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLGYEPEYALALESRLQGM 442
            F +A  D  S+++++ + DA  L K   GL KSR +   DL +IFG +    L  T++ LE+ L+ ADIGAATT  IL+D+RAVA+A  +    DV ++LR R+ E L+   D AL+ A A        P V+ VIGANGMGKTTTIGK+A RL  E  Q VL+AACDTFRAAAV QL+EW +RA VDI  P  G   P+     A+  A+                       G YDVLIVDTSGRLSNN ALNEELKK++RTI  R PG P +TLLV+D AVGRN VD A+ W  +VG++GL +TKLDGTAR G VVS+V D+G+PVKL+GVGE ++DLRDF+ + F+D+LL  +      L+ R   +
Sbjct:    6 FQKASDDFGSFLEQKAKDDALALAKFTAGLEKSRDQFGKDLKAIFGGAAGANLDDTVDALEDALLSADIGAATTTTILEDVRAVAEARGEYAEADVTAILRGRMAETLTKAGDGALRKAPAG-------PTVILVIGANGMGKTTTIGKLARRLRVEGGQRVLLAACDTFRAAAVGQLDEWAKRAAVDIVVPDAGVESPSAACYKALDVALGVAAVDESFRHSDLADDDVDAPAGPYDVLIVDTSGRLSNNAALNEELKKIRRTIDKRAPGAPHDTLLVVDAAVGRNAVDMARAWQADVGVSGLAVTKLDGTARAGFVVSVVEDLGIPVKLVGVGEALDDLRDFDVDAFLDSLLDVDARSVDDLKQRFAAL 369          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: XP_005714040.1 (unnamed protein product [Chondrus crispus] >CDF34221.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 292.7 bits (748), Expect = 2.200e-75
Identity = 176/373 (47.18%), Postives = 238/373 (63.81%), Query Frame = 0
Query:   57 RPRRQGHADMMVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALTDTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAKAEKLEP-DDVKSVLR---LRLIEALSVQDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALLG 426
            R  R+    + VFDF+R+  +E  + ++ +     EGK  +       YV+ + + D + + K+ +GL KSR+RL  DL +I        L +         + +D+G  T ++ILDDLRA ++A++LE  +D+K+ L+   +R++EA S    AL  A +P       P ++ VIGANGMGKTTTIGK+A+RL Q+ + SVLVAACDTFRAAAVDQLEEW  RA VDI  P   +  P+ VL  A+ KA EG YD LIVDTSGRL  N  L  EL+K+ R ++     GP ETLLV+D ++GRN V QA  W +EVG+T L +TKLDGTAR G VVS V ++ +PVKLIGVGE I+DLRDF+ E FVD L+G
Sbjct:   37 RVARRLRTPLAVFDFVRRAGQEQKKALEAL----REGKGID-------YVRDKVKRDIDEVRKVNDGLKKSRERLARDLANIVQGGRIEELEEVXXXXXXXXITSDLGVDTVDKILDDLRAESRAQRLEKREDIKNGLKKSLVRILEAKSNVGVALAKAESP-------PTIIMVIGANGMGKTTTIGKLAARLRQDGS-SVLVAACDTFRAAAVDQLEEWVRRADVDIVVPKPEQKSPSGVLFGAVEKAFEGKYDYLIVDTSGRLHTNANLMGELQKMVRVVSKFKENGPDETLLVVDASIGRNAVAQADTWKKEVGVTALAVTKLDGTARAGFVVSCVDELDIPVKLIGVGESIDDLRDFDAELFVDGLVG 390          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: XP_002182288.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC46189.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 270.0 bits (689), Expect = 1.500e-68
Identity = 156/306 (50.98%), Postives = 210/306 (68.63%), Query Frame = 0
Query:  124 LAKSRQRLMGDLDSIF-GASEDIGLTQTLNKLEEVLMMADIGAATTEQILDDLRAVAK--AEKLEPDDVKSVLRLRLIEALSVQ-DRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGG-------------PQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLR 413
            LAKSR RL+ +++ +F G S +    Q L+ L+++L+ AD+G  T E I+ +++++ +   + L  DD+KS++R +LIEAL+ +   A+Q   +P V+    P VLFV+GANGMGKTTTIGK+A RL  E NQ+VL+AACDTFRA AV+QL++W ERA VD+  P    T P+ VL  A+ K I   YD ++VDTSGRLSNN  L  ELKK+K+ I  R+                P ETLLVLD A GR  +D AKVWN E+G++GL++TKLDG+ARGG VV+I RD+ +PVKLIGVGEGI DLR
Sbjct:    1 LAKSRNRLLQNIEGLFTGVSPE----QVLDDLQDILLQADLGTKTAEDIVAEVKSLREDSTKMLSKDDLKSIMRGKLIEALNTELSGAIQF--SPLVD--KTPTVLFVMGANGMGKTTTIGKLAHRLRNEGNQTVLLAACDTFRAGAVEQLQQWAERAQVDMVGPSTKVTTPSAVLYAALDKGIAEKYDTILVDTSGRLSNNDQLTAELKKMKKVIQKRLSRENDEEGKPLPNLQVPHETLLVLDAAQGRMALDSAKVWNEEIGLSGLILTKLDGSARGGSVVAISRDIQLPVKLIGVGEGIEDLR 298          
BLAST of NO01G04120 vs. NCBI_GenBank
Match: XP_002296627.1 (signal recognition particle alpha, partial [Thalassiosira pseudonana CCMP1335] >EED87323.1 signal recognition particle alpha, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 269.6 bits (688), Expect = 2.000e-68
Identity = 148/289 (51.21%), Postives = 196/289 (67.82%), Query Frame = 0
Query:  151 LNKLEEVLMMADIGAATTEQILDDLRAVAK--AEKLEPDDVKSVLRLRLIEALSVQDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEANQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAITKAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADR-----------IPGG--PQETLLVLDGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVKLIGVGEGINDLRDFNPEDFVDALL 425
            L++LE+ L+ AD+G ATT+ +L++ R + +   E    DD+K++LR +L+EAL            P+        + F++GANGMGKTTTIGK+A RL  E+ Q VL+AACDTFRA AV QLE+W +RA VD   P E    P+ VL  A+ KAI+ DY+VL+VDTSGRLSNN AL  EL K+KR I  R           IP    P ETLLV+D A GR  +D AK W++EVG++GL++TKLDG+A+GG VV++ R++G+PVKL+GVGEG+ DLRDF PE FVD LL
Sbjct:   10 LDQLEDTLLQADLGMATTDDVLEEARFLREESTEIFSRDDIKALLRGKLLEAL-----------GPSTNNPTPLTIHFIMGANGMGKTTTIGKLAHRLKTESGQKVLLAACDTFRAGAVAQLEQWADRAQVDCFSPNESTNGPSAVLFGALDKAIKEDYNVLLVDTSGRLSNNDALTAELVKMKRVIQKRMSTKFDSAVKPIPNESVPHETLLVIDAAQGRMALDSAKQWDKEVGLSGLILTKLDGSAKGGSVVAVSRELGLPVKLVGVGEGLEDLRDFEPESFVDGLL 287          
The following BLAST results are available for this feature:
BLAST of NO01G04120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29383.13.800e-20078.99signal recognition particle-docking protein FtsY [... [more]
XP_005854120.12.100e-16685.64fused signal recognition particle receptor [Nannoc... [more]
CBJ31918.11.500e-10356.27PFtsY, plastid signal recognition particle recepto... [more]
CEM32712.12.600e-9246.73unnamed protein product [Vitrella brassicaformis C... [more]
GAX21145.11.800e-8548.27fused signal recognition particle receptor [Fistul... [more]
GAX15342.12.400e-8548.27fused signal recognition particle receptor [Fistul... [more]
XP_009040860.19.300e-8249.33hypothetical protein AURANDRAFT_32555 [Aureococcus... [more]
XP_005714040.12.200e-7547.18unnamed protein product [Chondrus crispus] >CDF342... [more]
XP_002182288.11.500e-6850.98predicted protein, partial [Phaeodactylum tricornu... [more]
XP_002296627.12.000e-6851.21signal recognition particle alpha, partial [Thalas... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007876NSK007876Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04120.1NO01G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577293gene_427Nannochloropsis oceanica (N. oceanica CCMP1779)gene
PFtsYgene1284Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04120.1NO01G04120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04120 ID=NO01G04120|Name=NO01G04120|organism=Nannochloropsis oceanica|type=gene|length=3009bp
CGCACAGGTGTGGTTGTGCTGTCAATATCCTCCCCCGTGCGCCTCCGCCT
CAAGCTCCGTCGCCAAGATCATCTCATCATGTTGCAGTGCTGTCGCCTCC
TCCTCCCCCTTTGCCTCCTCCCCCTGTTGATATCCGCCTTCGTCAACCCA
AGCTTCGGGGCCACCTCAAGCTTTTTAGACGATGGGAGAAGATGCACTCT
CAGgtacgtgtgcatgtgcggctgctgcttgttgtcgcggaaaacccgct
cactttcactttctcctctcaaactcctccagACCCTCTTACTACATCGT
CGACGATAGCAGTAGCGGGGGTCCCAGGCCACGAAGGCAAGGACATGCGG
ATATGATGGTATTTGACTTCATTCGAAAGCGCGCAGAAGAAGGCATCCAG
CAAGTGCAAAATATTGCCACTAAGACAGCGgtaagtgtgtgtgatgtgga
cgtgacatatggaaccttacttcattcctttgcatggctccttcgttcct
tttcccttgaattagcatgccgcatctttgtgtttgcatgtctgcatggg
gatatcttcttatccatcttcccctctcttcttcgcctcattcctccctt
tctcctccacagGAAGGAAAATTCGCTGAGGCCCTGACAGACACGGCATC
TTACGTTAAAAAACGCCAAGAAATCGATGCCGAGAATCTTCTCAAGTTAC
AAGAAGGCCTGGCGAAGAGCAGGCAACGATTGATGGGGGATTTGGATTCC
ATTTTTGGTGCAAGTGAGGATATTGGCTTGACTCAAACGTTGAACAAGgt
aggctggggcggagggtgggaggcggaagaggcaagaaggaggcgattga
gccgctgagctccagcctagacccgatgactcctctcaattaagtcatct
aagattctcgttcggccactcctcccttgctccctccctcccttgctccc
tccctccctttccccagCTGGAAGAGGTACTGATGATGGCAGATATTGGG
GCAGCCACCACCGAGCAGATTCTCGACGATTTGCGCGCTGTGGCAAAGGC
TGAAAAACTCGAGCCGGATGACGTGAAGTCAGTGTTGCGCTTGCGTTTGA
TTGAAGCTTTGTCTGTACAAGATAGGGCATTACAGCTGGCTAGTGCGCCT
GCGGTGGAGGGGAAGgtaagccgaagaaagggatggggtagaaaggaggg
agccagggtgtgaagacgcatctatgtcaggagggaggacgtgagacctg
taaagccttttcaggagtgatgagaagattactgacgggactactttcct
ttccccctttgtccttcccctcctttcctccctcgccccctccctccttt
cctccctcagAACTACCCCAAAGTCCTCTTCGTCATTGGGGCGAACGGTA
TGGGCAAAACGACCACCATTGGGAAGATTGCCTCCCGGCTCTCCCAGGAG
GCGAACCAGTCTGTGCTTGTCGCTGCATGTGACACCTTTCGCGCCGCGGC
CGTTGACCAACTCGAAGAGTGGACCGAGCGCGCGGGCGTGGATATCCACA
AACCCGGCGAGGGTGAAACGAAACCCGCACCGGTCCTGGACAATGCCATC
ACCAAGGCCATTGAAGGCGACTATGACGTGCTCATTGTGGACACATCGGG
GCGACTTTCCAACAACGTGGCACTGAATGAAGAATTAAAAAAACTCAAAC
GAACCATTGCAGATCGCATTCCCGGAGGGCCCCAGGAGACGCTTTTGGTC
CTGGACGGAGCAGTGGGGAGAAACGGAGTTGATCAAGCCAAGGTTTGGAA
CCGCGAGGTGGGAATCACTGGGCTTGTGATCACTAAGCTGGACGGAACGG
CACGGGGAGGGGTGGTGGTGTCCATCGTGCGAGATGTGGGCGTGCCGGTC
AAGTTGATTGGCGTGGGGGAGGGGATCAATGATTTGAGGGACTTTAATCC
GGAGGATTTTGTGGATGCCTTGTTGGGGTATGAGgtgagttttggagagg
gggcggggaggaaatggcgggagggaaggagggaaggagggttggggctg
gtgtgggagggagagagggagggaattgaagatgggggggaccgtctgcc
ttttctggtcaacttcagcggaatcaggacggaagttaagttaatcaatg
atggctttccttgtacccacacaggctgcagtattcacactcacccggag
actctccctcatccctcaaacctcacagCCCGAGTACGCCCTCGCTCTCG
AATCGCGCCTCCAAGGCATGGTCAAGGGGAAGCTCATCAAGCCCAAGGGT
GGTGTGCTTGTCAGGTCTGTCACGGCCAGCAGTACAGGCAACAACGCGGA
TGCTGAAGACATTGCAGATCGCATGGCGCGGAAGGTCGCAGGCCAGAGAG
GGCAGGGAGGCTCGGCCTCGCAACGGGGAGGAGGTGGAGGAGGGGGAGGG
GGAGGGGGACGCCGGGGGGAGGTAGCAAGAAAAAAAAACGGTAAAGCAGA
TAAGCAGAGTTATGAAAAGAAATGAAAAAAAGAAAGAAGTGAGCAGTATT
TTTAGCTGCGGGTGGGTTGGAGCGGGGGGGCGTATCGGTAGTATCTGATC
CTTCTAGTAAGGTAGACACAGGCAGTGGCTAAGCCTTAAGTTTCGAAATG
TGGTCGCATCTGTTCTTGTTTTGATGGGTGGATGCGTGTCTGTCTATCGA
AGTCTACTTTTAGGGTTGGAAAGGAAAGGAAGGATGGAAGAAATATGATA
ACTCGGAAACGGCTGGGCTCACTCATCAACAAGCATGTGGTATAGGGCAT
GCCGTCGCCCGTACGTCTTTAAAATTCATTCACGAACTTACTCAGTGCAC
TCAGGTACAGCATGCCCAGCTCGTGGGAACTTGGGTAGCTGAAGCGGCTG
TTATTGACTCAGCCAAGCGTCTGAGTTTGAATCAGCAAGTGTTCGCTGTT
GAGCAGCCCATGCCGCACTTCTTGCTTGCACTTTCTTATATCATTCCCTC
AACCCCTCC
back to top

protein sequence of NO01G04120.1

>NO01G04120.1-protein ID=NO01G04120.1-protein|Name=NO01G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MLQCCRLLLPLCLLPLLISAFVNPSFGATSSFLDDGRRCTLRPSYYIVDD
SSSGGPRPRRQGHADMMVFDFIRKRAEEGIQQVQNIATKTAEGKFAEALT
DTASYVKKRQEIDAENLLKLQEGLAKSRQRLMGDLDSIFGASEDIGLTQT
LNKLEEVLMMADIGAATTEQILDDLRAVAKAEKLEPDDVKSVLRLRLIEA
LSVQDRALQLASAPAVEGKNYPKVLFVIGANGMGKTTTIGKIASRLSQEA
NQSVLVAACDTFRAAAVDQLEEWTERAGVDIHKPGEGETKPAPVLDNAIT
KAIEGDYDVLIVDTSGRLSNNVALNEELKKLKRTIADRIPGGPQETLLVL
DGAVGRNGVDQAKVWNREVGITGLVITKLDGTARGGVVVSIVRDVGVPVK
LIGVGEGINDLRDFNPEDFVDALLGYEPEYALALESRLQGMVKGKLIKPK
GGVLVRSVTASSTGNNADAEDIADRMARKVAGQRGQGGSASQRGGGGGGG
GGGGRRGEVARKKNGKADKQSYEKK*
back to top
Synonyms
Publications