NO01G04030, NO01G04030 (gene) Nannochloropsis oceanica

Overview
NameNO01G04030
Unique NameNO01G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr1:1078675..1079610 +

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Properties
Property NameValue
DescriptionAbortive infection protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1078675..1079610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_086134894.1 (CPBP family intramembrane metalloprotease [Methylocaldum sp. SAD2])

HSP 1 Score: 72.4 bits (176), Expect = 2.800e-9
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 0
Query:  118 IAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALL-TLPALLLH-------FASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWM-GLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            IA    G L+  LLA+ +G    INPL    A +GF P+  V  ++ TLP  LL        ++  R +++ L E L G F S    ++ L        L   AG+ EE+ FRG LQP   Q  N  W+ G+  S+ +FA +H  TP Y LLA +  VYLG + + +    NL +P+++H ++D + F+
Sbjct:   16 IATWFEGGLI--LLAYVIGWAVSINPL----AHIGFSPMALVLGIVGTLPLYLLFALSYNLPWSGMRAVKNFLVEKL-GPFLSRYRWQELL-------YLGFLAGISEEILFRGLLQPWFEQ--NWGWIGGIAFSNLVFALVHWVTPLYALLAGLTGVYLG-IALDFGGERNLVIPILIHAIYDFLAFI 187          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_077728585.1 (CPBP family intramembrane metalloprotease [Methylocaldum sp. 14B])

HSP 1 Score: 72.0 bits (175), Expect = 3.600e-9
Identity = 65/189 (34.39%), Postives = 98/189 (51.85%), Query Frame = 0
Query:  118 IAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALL-TLPALLLH-------FASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWM-GLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            IA    G L+  LLA+ +G    INPL    A +GF P+  V  ++ TLP  LL        ++  R +++ L E L G F S    ++ L        L   AG+ EE+ FRG LQP   Q  N  W+ G+  S+ +FA +H  TP Y LLA +  VYLG + + +    NL +P+++H ++D + F+
Sbjct:   16 IATWFEGGLI--LLAYVIGWAVSINPL----AHIGFSPMALVWGIVGTLPLYLLFALSYNLPWSGMRAVKNFLVEKL-GPFLSRYRWQELL-------YLGFLAGISEEILFRGLLQPWFEQ--NWGWIGGIAFSNLVFALVHWVTPLYALLAGLTGVYLG-IALDFGGERNLVIPILIHAIYDFLAFI 187          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: KPK04676.1 (hypothetical protein AMS20_08400 [Gemmatimonas sp. SG8_28])

HSP 1 Score: 71.6 bits (174), Expect = 4.800e-9
Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 0
Query:  125 ELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASG-----REIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVV 292
            EL LGL+A  V       PL T   P   G  LA+ A L L   L    +      R + D L  S+  +F   TA    + + AI+     +AG+GEE+ FRG +Q  ++     P +GL  +S +F   HA T  Y +LA V+ VYLG L +    +WVP++VH L+D+V
Sbjct:    9 ELGLGLVAMVVAWLVGY-PLLTTIRPSVPGSALALLATLPLLGALWGLLTSNWPPIRRLVDELERSVIPLFRRCTA----IQLFAIAA----AAGIGEELLFRGLIQGAITSAA-GPAIGLFAASLLFGLAHAITGIYAVLAAVVGVYLGLLGLLTGGVWVPIVVHALYDLV 170          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: PHX63406.1 (hypothetical protein CK551_06215 [Planctomycetaceae bacterium])

HSP 1 Score: 71.6 bits (174), Expect = 4.800e-9
Identity = 57/179 (31.84%), Postives = 90/179 (50.28%), Query Frame = 0
Query:  117 TIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPL------VVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFD 290
            TI+ ++ G L+LG  A+P+G    I+PL+          +  V+ L  LP  L+          M+  S+  +   +T  K  +        I   + +SL AG+GEE+ FRG LQ  L+Q  + PW  +  +S  F  +H+ +  YF+LA ++  YLG L +   NL  P+MVH L+D
Sbjct:   13 TISIMVEGGLVLG--AYPLGWLLGIHPLSNFVINWHDSWIGMVATLPLLPIFLI----------MIHGSIPFLGKLKTISKDTIRPMMRRCTIPDLLGISLLAGVGEEMVFRGVLQSWLAQ-DSPPWAAVMAASLSFGMMHSMSKSYFVLATLVGAYLGLLFVWTGNLIAPIMVHFLYD 178          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_067560664.1 (CPBP family intramembrane metalloprotease [Halofilum ochraceum])

HSP 1 Score: 71.2 bits (173), Expect = 6.200e-9
Identity = 55/182 (30.22%), Postives = 91/182 (50.00%), Query Frame = 0
Query:  130 LLAFPVG----HFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWGGGKRGKE 308
            +LA P+G      F  +P     A  G  PLLA  A+    +  +  A   ++E ++R  +E +F            +A  V++S  AG+GEE+ FRG +Q  ++  +   W GL ++S +F  +HA +  YF+LA  + +YLG L     NL +P +VH L+D +     +    G RG++
Sbjct:   28 VLAIPLGLQPWQAFGASPGLVFAAVAGTVPLLAALAV----SARVGAAWFEDVEALVRPLIESVFRGRG--------VAGVVIVSALAGVGEELLFRGVIQTAMA-ASFGAWPGLVVASVLFGMMHALSRAYFVLATAMGLYLGVLYQATDNLLLPAIVHGLYDAIAI--GYLLLAGDRGRD 194          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_101052892.1 (CPBP family intramembrane metalloprotease [Methylomonas sp. Kb3] >PKD40354.1 CPBP family intramembrane metalloprotease [Methylomonas sp. Kb3])

HSP 1 Score: 70.9 bits (172), Expect = 8.100e-9
Identity = 60/178 (33.71%), Postives = 98/178 (55.06%), Query Frame = 0
Query:  128 LGLLAFPVGHFFKINP---LATAKAPMGFGPLLAVSALLTLPALL--LHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPW---MGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            L +LA  +G    ++P   LA ++A +G G L A   LL L   +  L +   ++I D+L E+L    G+  A +    ++    +L+  AG  EE  FRG LQP L     N W   +GL +S+ +FA +HA TP Y +LA+++ +Y+G + + Y    NL +P+++H ++D V FV
Sbjct:   22 LAVLALALGWLADLDPFASLAFSEAALGIG-LFATGPLLVLFFAMQQLSYPPIQKIRDLLLETL----GARLAYRHWTDLL----ILAAIAGFAEEALFRGFLQPWL----ENGWGASVGLWVSNVLFALVHAVTPLYAVLAMLMGLYMG-VMLDYGGERNLLMPMVIHAVYDFVAFV 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_033157008.1 (CPBP family intramembrane metalloprotease [Methylomonas sp. LW13])

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-8
Identity = 60/178 (33.71%), Postives = 98/178 (55.06%), Query Frame = 0
Query:  128 LGLLAFPVGHFFKINP---LATAKAPMGFGPLLAVSALLTLPALL--LHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPW---MGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            L +LA  +G    ++P   LA ++A +G G L A   LL L   +  L +   ++I ++L E+L    G+  A +    ++    +L+  AG  EE  FRG LQP L     N W   +GL +S+ +FA +HA TP Y +LA+++ +Y+G + + Y    NL VP+++H ++D V FV
Sbjct:   22 LAVLALALGWLADLDPFASLAFSEAALGIG-LFATGPLLVLFFAMQQLSYPPIQKIRELLLETL----GARLAYRHWTDLL----ILAAIAGFAEEALFRGFLQPWL----ENGWGASVGLWVSNVLFALVHAVTPLYAVLAMLMGLYMG-VMLDYGGERNLLVPMVIHAVYDFVAFV 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_064024292.1 (CPBP family intramembrane metalloprotease [Methylomonas koyamae] >OAI29993.1 abortive infection protein [Methylomonas koyamae])

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-8
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 0
Query:  157 LAVSALLTLPALLLHFASGREIE---DMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            +A+  L T+P LLL FA           +RE L    G+  + +  + ++ ++ +    AG  EE  FRG LQP L ++  N  +GL  S+ +FA +HA TP Y LLA ++ +YLG+L + Y    NL  PV++H  +D V FV
Sbjct:   48 VAIGLLATVPLLLLFFALQHLAYPPLQTIRELLLETLGARLSDRHWVDLLVLACI----AGFAEEALFRGFLQPWL-ELRWNAELGLLFSNVVFALVHAVTPLYALLAFLMGLYLGTL-LDYGGERNLLTPVVIHAAYDFVAFV 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_020484173.1 (MULTISPECIES: CPBP family intramembrane metalloprotease [Methylomonas])

HSP 1 Score: 70.1 bits (170), Expect = 1.400e-8
Identity = 59/178 (33.15%), Postives = 97/178 (54.49%), Query Frame = 0
Query:  128 LGLLAFPVGHFFKINPLAT---AKAPMGFGPLLAVSALLTLPALL--LHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPW---MGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            L +LA  +G    ++P A    +++ +G G L A   LL L   +  L +   ++I D+L E+L    G+  A +    ++    +L+  AG  EE  FRG LQP L     N W   +GL +S+ +FA +HA TP Y +LA+++ +Y+G + + Y    NL VP+++H ++D V FV
Sbjct:   22 LAVLALALGWLADLDPFANLEFSESALGIG-LFATGPLLVLFFAMQQLTYPPIQKIRDLLLETL----GARLAYRHWTDLL----ILAAIAGFAEEALFRGFLQPWL----ENGWGASVGLWVSNLLFALVHAVTPLYAVLAMLMGLYMG-VMLDYGGERNLLVPMVIHAVYDFVAFV 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_054759207.1 (CPBP family intramembrane metalloprotease [Methylomonas koyamae] >ATG88352.1 abortive infection protein [Methylomonas koyamae])

HSP 1 Score: 70.1 bits (170), Expect = 1.400e-8
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 0
Query:  157 LAVSALLTLPALLLHFASGREIE---DMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            +A+  L T+P LLL FA           +RE L    G+  + +      A  ++L+  AG  EE  FRG LQP L ++  N  +GL  S+ +FA +HA TP Y LLA ++ +YLG+L + Y    NL  PV++H  +D V FV
Sbjct:   48 VAIGLLATVPLLLLFFALQHLAYPPLQTIRELLLETLGARLSDRH----WADLLVLACIAGFAEEALFRGFLQPWL-ELRWNAELGLLFSNVVFALVHAVTPLYALLAFLMGLYLGTL-LDYGGERNLLTPVVIHAAYDFVAFV 185          
The following BLAST results are available for this feature:
BLAST of NO01G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_086134894.12.800e-934.39CPBP family intramembrane metalloprotease [Methylo... [more]
WP_077728585.13.600e-934.39CPBP family intramembrane metalloprotease [Methylo... [more]
KPK04676.14.800e-935.47hypothetical protein AMS20_08400 [Gemmatimonas sp.... [more]
PHX63406.14.800e-931.84hypothetical protein CK551_06215 [Planctomycetacea... [more]
WP_067560664.16.200e-930.22CPBP family intramembrane metalloprotease [Halofil... [more]
WP_101052892.18.100e-933.71CPBP family intramembrane metalloprotease [Methylo... [more]
WP_033157008.11.100e-833.71CPBP family intramembrane metalloprotease [Methylo... [more]
WP_064024292.11.100e-836.11CPBP family intramembrane metalloprotease [Methylo... [more]
WP_020484173.11.400e-833.15MULTISPECIES: CPBP family intramembrane metallopro... [more]
WP_054759207.11.400e-837.50CPBP family intramembrane metalloprotease [Methylo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007889NSK007889Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04030.1NO01G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577260gene_416Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g9gene1291Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04030.1NO01G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04030 ID=NO01G04030|Name=NO01G04030|organism=Nannochloropsis oceanica|type=gene|length=936bp
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
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protein sequence of NO01G04030.1

>NO01G04030.1-protein ID=NO01G04030.1-protein|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MAARSPSSRSLLAALLLFLPFVAHGFVFPQTRMSNILPSSRVQSTLIASL
STSSSSSSFASSTSRASPSSPFLRRRWRPLFQQQPPAGEELSGPTLSKDM
SPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAP
MGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPL
VVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAAL
HAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG
GGKRGKEANTA*
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Synonyms
Publications