NO01G04030, NO01G04030 (gene) Nannochloropsis oceanica

Overview
NameNO01G04030
Unique NameNO01G04030
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length936
Alignment locationchr1:1078675..1079610 +

Link to JBrowse

Properties
Property NameValue
DescriptionAbortive infection protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1078675..1079610 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
BLAST of NO01G04030 vs. NCBI_GenBank
Match: EWM29340.1 (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 341.3 bits (874), Expect = 3.200e-90
Identity = 182/233 (78.11%), Postives = 195/233 (83.69%), Query Frame = 0
Query:   78 RPLFQQQPPAGEELSGPTLSKDMSPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG--GGKRGKEA 309
            +PLFQQ+PP  E  S      D   IPPP + P SPNYKTIAAL+ GELLLGLLAFP+GH FKINPLATAKA  GFGPL AVSALLTLPALLLH  SGREIEDMLRESLEGIFGS+TAKK+P VVIAISVLLSLSAGMGEEVAFRGALQPI +Q T  P  GLGISS IFAALHAATPRYFLLALVLSVYLG LQ+RY NLWVP++VHTLFDVVGF+QNHFWG  G K G E+
Sbjct:   68 QPLFQQKPPDSEAPSPEVTPSDQPSIPPP-AIPRSPNYKTIAALVAGELLLGLLAFPLGHVFKINPLATAKAASGFGPLAAVSALLTLPALLLHLTSGREIEDMLRESLEGIFGSDTAKKRPAVVIAISVLLSLSAGMGEEVAFRGALQPIFAQATGQPMWGLGISSLIFAALHAATPRYFLLALVLSVYLGCLQLRYCNLWVPILVHTLFDVVGFMQNHFWGHWGRKTGGES 299          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: EJK73636.1 (hypothetical protein THAOC_04730 [Thalassiosira oceanica])

HSP 1 Score: 80.1 bits (196), Expect = 1.300e-11
Identity = 67/222 (30.18%), Postives = 104/222 (46.85%), Query Frame = 0
Query:   86 PAGEELSGPT-LSKDMSPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTL-----PALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWGG 302
            PA  E+ GPT L  D++ I       ++     I   L      G+  + +G  F +NP A  +      PL  ++ ++ +     PAL       + +      ++  + G    K++    +A S+LL L AG+GEE+ FRG  Q +LS    +    L IS  +F  LHA TP Y LLA   SV+ G + I   NL +P++ HT++DV   +  H W G
Sbjct:  143 PASREVDGPTSLRSDVTNI----LRLVATQGLLIPLSLALARAFGVANYGLGAGFSVNPAAILQGLQYCVPLFGLAGIMRVIEPYSPAL-------QGVTKATERTVLFVMGK---KRRLGFALAFSILLGLCAGVGEELLFRGVFQTLLSTKLGSSNSALCISGVVFGLLHAVTPLYALLAGAASVFFGYIYITTGNLAIPMVAHTIYDVGALIWAH-WDG 349          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: CBN80000.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 77.4 bits (189), Expect = 8.700e-11
Identity = 54/158 (34.18%), Postives = 83/158 (52.53%), Query Frame = 0
Query:  141 INPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGL-GISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNH 298
            ++P ATA    G  PLL    LL        +   R+I++   E    +FGS   K+Q   V  + + LS+  G+ EE AFRG L  IL+  T  P   + G+S+ IF +LHAAT  YFL A +  ++   L +   N++VP++ H ++D +  V+ H
Sbjct:  218 VSPAATALGVAGMVPLLGYGLLLD---RWTEWEWVRKIDEATSEVALQLFGS---KRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYH 369          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: XP_002182295.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46196.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 77.4 bits (189), Expect = 8.700e-11
Identity = 54/160 (33.75%), Postives = 79/160 (49.38%), Query Frame = 0
Query:  152 GFGPLLAVSA-------LLTLP----ALLLHFASGR--EIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHF 299
            GFGP +           LL LP    A  L     R   ++D+ + +   I        +PL     ++ L L+AG GEE+ FRG LQ  L+     P + +G +S +F ALHA TP Y  LA + SVY G++ + + NL VP+  HT++DV      H+
Sbjct:  136 GFGPNIVFDLKSIGGGFLLALPLGGLAAALDLIEDRFPALQDVTKATQRSILALMGGTFKPLFAFFTALALGLAAGFGEEMLFRGILQYELAN-RFGPVLAVGAASIVFGALHAVTPLYAFLATLASVYFGAIYLAFDNLAVPIWCHTIYDVGALYYAHW 294          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_066982225.1 (CPBP family intramembrane metalloprotease [Methylomonas lenta] >OAI15396.1 abortive infection protein [Methylomonas lenta])

HSP 1 Score: 77.4 bits (189), Expect = 8.700e-11
Identity = 64/192 (33.33%), Postives = 97/192 (50.52%), Query Frame = 0
Query:  107 SSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFG-PLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            +++PL  N+  +A     E  L  LA  +G    +NP A     +GF    L    LLTLP +L+ FA  +E+     + +  +       +         ++L+  AG  EEV FRG LQP L  VT     GL IS+ +FA +HA TP Y +LAL++ +YLG + + Y    NL  P+++H  +D + FV
Sbjct:    3 NTAPLPDNFFRMACYF--EAALTFLAILLGWLMDVNPFAY----LGFDEQALVYGILLTLPLVLIFFAM-QELPFAGLQKIRALLLETLGARLYRCHWTDLLILAAIAGFSEEVLFRGTLQPWLENVTGMT-AGLLISNVLFALVHAVTPLYAVLALLMGLYLG-MSLDYGAERNLLTPIVIHGFYDFIAFV 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_098062310.1 (CPBP family intramembrane metalloprotease [Longimonas halophila] >PEN06784.1 CPBP family intramembrane metalloprotease [Longimonas halophila])

HSP 1 Score: 76.6 bits (187), Expect = 1.500e-10
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 0
Query:  208 LLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFV 295
            LL+++AG+GEE+ FRG LQ  L+ +   PW  L ++S +F   H  TP Y ++A ++  YLG L      L VPV+VHTL+D V FV
Sbjct:  123 LLAIAAGVGEELLFRGVLQAELAMLW-EPWSALVVASIVFGLCHWITPAYAIIATIMGAYLGGLYWYTGGLLVPVLVHTLYDFVAFV 208          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: PPD29536.1 (CPBP family intramembrane metalloprotease [Methylomonas sp.])

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-10
Identity = 67/192 (34.90%), Postives = 99/192 (51.56%), Query Frame = 0
Query:  107 SSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVS-ALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRY---ANLWVPVMVHTLFDVVGFV 295
            +S P++  +  +A     E  L LLA  VG    I+P       + F     V+  LLTLP LLL F S +E+       +  +       +         ++L++ AG  EEV FRGALQP L  VT     GL IS+ IFA +HA TP Y LLA+++ +YLG + + Y    NL  P+++H+L+D + F+
Sbjct:    3 NSPPVTNTFFRVACYF--EAALTLLAIGVGWLTGIDPF----EDLIFNERAFVNGVLLTLPLLLLFF-SMQELPIQALAKIRQLLLETLGARLYQCHWTDLLILAVIAGFSEEVLFRGALQPWLENVTGIT-NGLLISNLIFALVHAVTPLYALLAMLMGLYLG-MSLDYDTERNLLTPIVIHSLYDFIAFI 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_013817118.1 (CPBP family intramembrane metalloprotease [Methylomonas methanica] >AEF98845.1 Abortive infection protein [Methylomonas methanica MC09])

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-10
Identity = 63/192 (32.81%), Postives = 93/192 (48.44%), Query Frame = 0
Query:  106 PSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAPMGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            P S+PL+ N+  +A     E  L L+A  +G    I+P A           L    LLTLP LLL F   + I     E +  +       +         ++L+  AG  EEV FRGALQP L         GL +S+ +FA +HA TP Y LLA+++ +YLG + + Y    NL  P+++H  +D + F+
Sbjct:    2 PQSAPLASNFYRVACYF--EAALTLVALVLGWLVDIDPFADLALD---EQALLHGLLLTLPLLLLFFGM-QAIPLKALEKIRALLLETLGPRLYRCHWTDLLILAAIAGFSEEVLFRGALQPWLENALGMT-AGLWVSNALFALVHAVTPLYALLAMLMGLYLG-MSLDYGGERNLLTPIVIHGFYDFIAFL 185          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: OEU09927.1 (Abi-domain-containing protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 73.9 bits (180), Expect = 9.600e-10
Identity = 56/185 (30.27%), Postives = 91/185 (49.19%), Query Frame = 0
Query:  121 LLGGELLLGLLAFPVGHFFKINPLATAKAPMGFG-PLLAVSALLTLPALLLHFA------SGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHF 299
            L+GG+ LL  +A  V  F    P       + FG P + +  L +LP   L  A          ++D+ + +   +        +P++    ++ L ++AG+GEE+ FRG LQ  L     + ++ +GI+S IF ALHA TP Y  LA + SVY G L +   NL +P++ H  +D    +  H+
Sbjct:    1 LVGGQSLLIGVAIIVAKFCG-TPNLGLGPNIDFGLPSIGLGILWSLPLGALGVALDVVEDKFPALQDVTKATQSSVLSLLGGTFRPIIGTITALALGVAAGLGEEMLFRGVLQNELGIRIGSDYIAVGIASIIFGALHAVTPLYAGLAGLASVYFGWLYLATGNLAIPIVTHAFYDWAALLYAHW 184          
BLAST of NO01G04030 vs. NCBI_GenBank
Match: WP_064038235.1 (CPBP family intramembrane metalloprotease [Methylomonas methanica] >OAH99148.1 abortive infection protein [Methylomonas methanica])

HSP 1 Score: 72.8 bits (177), Expect = 2.100e-9
Identity = 60/178 (33.71%), Postives = 100/178 (56.18%), Query Frame = 0
Query:  128 LGLLAFPVGHFFKINPLAT---AKAPMGFGPLLAVSALLTLPALL--LHFASGREIEDMLRESLEGIFGSETAKKQPLVVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPW---MGLGISSFIFAALHAATPRYFLLALVLSVYLGSLQIRYA---NLWVPVMVHTLFDVVGFV 295
            L +LA  +G    ++P A+   +++ +G G LLA + LL L   +  L +   ++I D+L E+L    G+  A +    ++    +L+  AG  EE  FRG LQP L     N W   +GL +S+ +FA +HA TP Y +LA+++ +Y+G + + Y    NL VP+++H ++D V FV
Sbjct:   22 LAVLALALGWLADLDPFASLEFSESALGIG-LLATAPLLVLFFAMQQLSYPPIQKIRDLLLETL----GARLAYRHWTDLL----ILAAIAGFAEEALFRGFLQPWL----ENGWGASVGLWVSNLLFALVHAVTPLYAVLAMLMGLYMG-VMLDYGGERNLLVPMVIHAVYDFVAFV 185          
The following BLAST results are available for this feature:
BLAST of NO01G04030 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29340.13.200e-9078.11abortive infection protein [Nannochloropsis gadita... [more]
EJK73636.11.300e-1130.18hypothetical protein THAOC_04730 [Thalassiosira oc... [more]
CBN80000.18.700e-1134.18conserved unknown protein [Ectocarpus siliculosus][more]
XP_002182295.18.700e-1133.75predicted protein [Phaeodactylum tricornutum CCAP ... [more]
WP_066982225.18.700e-1133.33CPBP family intramembrane metalloprotease [Methylo... [more]
WP_098062310.11.500e-1044.83CPBP family intramembrane metalloprotease [Longimo... [more]
PPD29536.11.900e-1034.90CPBP family intramembrane metalloprotease [Methylo... [more]
WP_013817118.12.500e-1032.81CPBP family intramembrane metalloprotease [Methylo... [more]
OEU09927.19.600e-1030.27Abi-domain-containing protein, partial [Fragilario... [more]
WP_064038235.12.100e-933.71CPBP family intramembrane metalloprotease [Methylo... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007889NSK007889Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04030.1NO01G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577260gene_416Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g9gene1291Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04030.1NO01G04030.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04030 ID=NO01G04030|Name=NO01G04030|organism=Nannochloropsis oceanica|type=gene|length=936bp
ATGGCGGCACGTTCACCATCCTCCCGAAGCCTCCTCGCGGCCCTGCTCCT
CTTCCTGCCTTTCGTGGCCCACGGCTTTGTATTCCCCCAAACAAGGATGA
GCAATATTCTGCCTTCGTCCCGCGTGCAGTCCACCTTGATAGCGTCCTTA
TCGACCTCGTCCTCGTCCTCTTCTTTTGCCTCGTCCACCTCCCGTGCTTC
GCCCTCCTCCCCCTTCCTCCGTCGGCGTTGGCGTCCGCTCTTTCAACAAC
AACCCCCGGCGGGAGAAGAATTATCTGGCCCCACTCTGTCCAAGGACATG
TCGCCCATCCCTCCTCCTTCTTCCTCCCCTCTCTCGCCCAATTACAAAAC
CATTGCCGCCCTTTTAGGCGGAGAGCTCCTCCTCGGCCTCTTGGCATTCC
CTGTGGGTCATTTTTTCAAAATTAATCCACTGGCGACCGCAAAGGCACCG
ATGGGGTTCGGACCGTTGTTGGCAGTCAGTGCGCTGCTGACACTCCCTGC
CTTGCTTCTCCATTTTGCCTCCGGCCGAGAAATCGAGGACATGTTGCGGG
AATCGCTGGAAGGTATTTTTGGTTCAGAGACGGCAAAGAAACAGCCGTTG
GTCGTGATAGCTATTTCGGTGTTGCTTTCCTTGTCAGCAGGCATGGGGGA
AGAGGTCGCATTCCGTGGGGCCTTGCAACCGATTTTGAGTCAAGTGACAA
ATAATCCGTGGATGGGCCTGGGGATCTCCTCGTTCATTTTTGCAGCGCTT
CATGCGGCGACTCCGCGGTACTTTCTGCTAGCATTAGTACTGTCGGTATA
TTTGGGTTCTCTGCAGATAAGGTACGCGAACTTGTGGGTGCCGGTGATGG
TGCACACGCTGTTTGACGTCGTGGGGTTTGTCCAGAACCACTTTTGGGGT
GGAGGGAAGCGGGGGAAGGAGGCGAATACGGCTTAA
back to top

protein sequence of NO01G04030.1

>NO01G04030.1-protein ID=NO01G04030.1-protein|Name=NO01G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MAARSPSSRSLLAALLLFLPFVAHGFVFPQTRMSNILPSSRVQSTLIASL
STSSSSSSFASSTSRASPSSPFLRRRWRPLFQQQPPAGEELSGPTLSKDM
SPIPPPSSSPLSPNYKTIAALLGGELLLGLLAFPVGHFFKINPLATAKAP
MGFGPLLAVSALLTLPALLLHFASGREIEDMLRESLEGIFGSETAKKQPL
VVIAISVLLSLSAGMGEEVAFRGALQPILSQVTNNPWMGLGISSFIFAAL
HAATPRYFLLALVLSVYLGSLQIRYANLWVPVMVHTLFDVVGFVQNHFWG
GGKRGKEANTA*
back to top
Synonyms
Publications