NO01G04010, NO01G04010 (gene) Nannochloropsis oceanica

Overview
NameNO01G04010
Unique NameNO01G04010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3865
Alignment locationchr1:1070201..1074065 +

Link to JBrowse

Properties
Property NameValue
DescriptionIndole-3-glycerol phosphate synthase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1070201..1074065 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004425indole-3-glycerol-phosphate synthase activity
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR011060RibuloseP-bd_barrel
IPR013798Indole-3-glycerol_P_synth
Homology
BLAST of NO01G04010 vs. NCBI_GenBank
Match: EWM29333.1 (indole-3-glycerol phosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 1233.4 bits (3190), Expect = 0.000e+0
Identity = 679/1011 (67.16%), Postives = 779/1011 (77.05%), Query Frame = 0
Query:   24 QLLLVLIVAFVGGVAVQAFVPHARS-----YPLSSRSHGRLSRRSSRGTPLYMIDNFFRFHEKNRQLNWDDYFGKARYDHPHAFGSCAQSLVGAASPAAAVDAALQQALYQLPACASLDLAIVAIYSSDTDEIDAILAHLVLALPGSTRVVGWAGASLGAAVAPSPDGLGATVVGGGSTPTVSITLASIPSVSGRGFFVSEDELRLWKAQGETETGSNRNLVQGQQE--DDEEMADYKRELAAAAAATGYLGPDKKWEHRAGVTLNEAYKDPPVFLLFGNLEDVSLAQVALQGLDRTYPGTARIGGLSNGVVLFSREGQSPLGKGGRILKEDGTGLLGLALVGDIRTLTYVNQGAARMSDQGIFRIEAVSEDGMTVTQVSVPGSSGGSQTPADAGVPPAMEGGIVLALG-----EEGDDGVVEAGPNAIGVGGAREGADRWSLVSVRGSKQAAAVLKDGWTIGAEGSLRLNNRMTRVGQYLSVYKYDSTIALAQEAELIADLQKDIDDEWSKAELGVMKFRPTGVLMSKGAFYPSDGLTGSFGEALTQALPTAPLAGLGAGAAQFGPLDPKRSSALFQEALVVSVLACKAKRRDVREIRFFDHGRGSSASVASGGNMSPLDLPFDPEKPFLEKGTGEVAVNRQAALIGTDVRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQ-AEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGGAGAGGAPLILVEGRSKLTEEEKDELRGLGVSGEVFAFGDLPASERIEAGR-KGKMTATVGGV-------VAAGGGNSMESLKELLRAKAAASSTSDP 1014
            Q LL  ++A + GV VQAFVPH  +     +P    S  R S R +R  PL+MIDNFFR HEKNRQLNWDDYFGKARYDHPHAFGS AQ L  + S   AVD +LQQALYQLPACAS+DLAIVA++SSDT EIDA+L HL  ALPG TRV+GWAG SLG AV P+ +GLGA +VG    P +S+TLASIPSV+GRGF++ E+ELRLWKAQG  E       V GQ +   DEE      E+++AAAA  +LGPDKKWE R GVT+NEAYKDPPV LL G+LED SLAQ ALQGLDRTYPGTARIGGLS+GVVLFSREG     +G RI +E+G GLLGLAL+GDIR LT+VNQ   R+ +   +R+E+VSEDG T+ +VS PG  G  QTP +AG+   +EG    ALG     EE D    E+       GGAR+GADRWSLVSVRGS++ AA+L  GW  G++GSLRL  R+ R GQ+LS+Y  D+      E  L+  L++++DDEW KAELGV KFRP GVL++K A YPS G+   FGEAL   L   P+AGL    AQF PL   RSSAL+ E+LVV VLACKAKRRD+REIRF D  RG   + AS    SPLD+PFDP++P +++ TGEVAVNRQAALIGTDVRVDNMAWNVREESVYPRSLFE MVWTKERELYFVRE+APLMNLMR VMMMIKNPDAAVQAKARGLDV  ALK+Q  E   WAVLGDISRGTPF GVLAPL+D  QA +ATIA   AGAVA+RVDQTYYGGKYQHVR+VKDALRE RVPVVADDLVLYPYQLYLAKLFGADGVKMGQLS+LSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQ+SVLT+DDR+WATM  N G KHR+VEWLQDP VQASL+ARRE GAGAGGAPLILVEGRS L++ EK+EL+ LGV GEVFAF DLP+S R+EAGR K  M +  GG         + GGG S+ESLKELLRA+AAASS++ P
Sbjct:   17 QSLLFCLIATLTGVLVQAFVPHGNTVTAPIFPGPPPSPHRPSCRRAR--PLFMIDNFFRMHEKNRQLNWDDYFGKARYDHPHAFGSAAQVLTESLSVREAVDESLQQALYQLPACASIDLAIVAVHSSDTSEIDAVLTHLAQALPGHTRVLGWAGQSLGEAVRPAFEGLGARLVGEDGLPFISVTLASIPSVAGRGFYIGEEELRLWKAQGAAEASGQEVPVGGQDQGGTDEENVG---EVSSAAAANSFLGPDKKWEQRVGVTVNEAYKDPPVILLLGSLEDASLAQAALQGLDRTYPGTARIGGLSDGVVLFSREGGPGSPQGARIFQEEGNGLLGLALLGDIRALTFVNQRVKRVPNTSTYRVESVSEDGKTIMEVSTPG--GVRQTPVEAGLQAVLEGEEARALGLGDVDEEADMSAAES------PGGARQGADRWSLVSVRGSQEPAAMLPAGWVFGSDGSLRLAGRVARKGQFLSIYVQDTGSTHEGEMGLVGALRREVDDEWGKAELGVTKFRPAGVLLAKDAAYPSQGIGQDFGEALGDTLAGTPIAGLVMDTAQFAPLVMTRSSALYHESLVVHVLACKAKRRDLREIRFRD--RGLPGAGASNTKPSPLDMPFDPQRPVMDEATGEVAVNRQAALIGTDVRVDNMAWNVREESVYPRSLFESMVWTKERELYFVREDAPLMNLMRTVMMMIKNPDAAVQAKARGLDVTEALKAQTVEGDKWAVLGDISRGTPFHGVLAPLYDPEQAARATIAGGQAGAVAVRVDQTYYGGKYQHVREVKDALREARVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSILSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQTSVLTIDDRNWATMGSNSGSKHRAVEWLQDPVVQASLQARRE-GAGAGGAPLILVEGRSNLSDAEKEELKRLGVGGEVFAFADLPSSVRVEAGREKNGMGSQNGGPSGLGMGGTSMGGGKSIESLKELLRAQAAASSSTPP 1011          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: CBN76677.1 (Indole-3-glycerol-phosphate synthase [Ectocarpus siliculosus])

HSP 1 Score: 131.0 bits (328), Expect = 2.100e-26
Identity = 227/921 (24.65%), Postives = 380/921 (41.26%), Query Frame = 0
Query:  104 SCAQSLVGAASPAAAVDAALQQALYQLPACASLDLAIVAIYS--SDTDEIDAILAHLVLALPGSTRVVGWAGASLGAAVAPSPDGLGATVVGGGSTPTVSITLASIPSVSGRGFFVSE-------DELRLWKAQGETETGSNRNLVQGQQEDDEEMADYKRELAAAAAATGYLGPDKKWEHRAGVTLNEAYKDPPVFLLFGNLEDVSLAQVALQGLDRTYPGTARIGGLSNGVVLFSREGQSPLGKGGRILKEDG---TGLLGLALVGDIRTLTYVNQGAARMSDQGIFRIEAVSEDGMTVTQVSVPGSSGGSQTP--ADAGVPPAMEGGIVLALGEEG-----DDGVVEAGPNAIG-----VGGAREGADRWSLVSV--RGSKQAAAVLKDGWTIGAEGSLRLNNRMTRVGQY---LSVYKYDSTI-ALAQEAELIADLQKD--IDDEWSKAELGVM----------------KFRPTGVLMSKG-----AFYPSDGLTGSFGEALTQALPTAPLAGLGAGAAQFGPLDPKRSSALFQEALVVSVLACKAKRRDVREIRFFDHGRGSSASVASGGNMSPLDLPFDPEKPFLEKGTGEVAVNRQAALIGTDVRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVL-APLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGGAGAGGAPLILVEGRSKLTEEEKDELRGLGVS----GEVFAFGDLPA 967
            S  + LV A + AAA      +AL QLP  AS+DLA++ + S   + + ++ ++  L   LPG + VVG + A      A    G G  VV   +   + +TLA++P V  + F++++       D   +WK   +         +     D +  A+ ++ L   +A  G            G  + E+ K+P  F                  + +T P   + G    G            G  G ++++      G++G++L GDIR  ++V+QGA R+     F  + V    +   +V+V G+    Q    + A  P AM   +   L +E       + +V   P  IG     +     G D + +  V     K  +  + D    GA   L + +R+    ++   L  YK    +  LA  +   A   +D   D E +   +GV+                 FR  G L+  G       +  D    S   A+ + +P  PL G        G L     + LF  +  V+V +    RR   E       R  S +V  G +   + +  D E+  L   + +  V R+    G  V    + ++V E    P++  E +VW KE  +   R+  P+  L+    M        ++ K +  DVV+AL +     G A+L ++ R  P  G L    FD V+ ++ ++  +G  A+A+  D  ++G  Y+ +  ++ A+     PV+  D+V+YPYQ+Y A+L GAD +K+     L  +DL Y  KI   L +  I+SV+S+ Q+    AL L     +++ +RD AT  ++     R    L DP VQ  L          G    +LVEG  + T+E+ D  +  G+S    GE F   + PA
Sbjct:   62 STKKELVPAIAEAAA------KALAQLPEGASIDLALIHVSSIYGNAERLENVVPELRKVLPGLSAVVGCSSAG-----AIGMQGKG-RVVEIENRSCLGLTLATLPGVKVQPFYLADMDVPDPFDPPAVWKRAVQLRDSD----IPATDADGDAGAELRKVLPGLSAVVGCSSAGAIGMQGKGRVV-ESGKEPSSF------------------VTQTSPRQMQTGTQGQG------------GTAGTVMEKGAFYREGMVGVSLTGDIRMRSFVSQGARRVGP--TFNADKVDGPMVKSLRVAVRGADDEGQDDWISPALPPLAMIKQVQKKLSDEDKRLVQTNMLVGVAPELIGNTANEMMAISTGRDHFVVQGVLRTSLKDGSITVGDSVEPGARLQLFVRDRLAAGDEFQAALLAYKRRELLETLASSSGEGASDARDGNGDIEEATQNVGVVDSAVSGPSAGDEGQTTPFRAAGALLFPGLDRGRTLWEEDHYQSS---AVFKTVP-VPLGGFFTNGVA-GALSEGSRTTLFGSSTSVAVFSPITARRTTVE------PREGSTTVDDGSDARGVVVGEDGEE-ILGDDSDDFVVQRRDVKAGRAVLSGPVLYSVAESVAQPKNTLEALVWEKEAAVDRSRDRWPMSLLVSRCRMF------NLEEKNKPRDVVAALNNGKGNGGVAILAEVKRTAPVTGKLRRGEFDVVELSR-SLEGAGVAAIAVNTDPKFFGCSYEDLTSIRSAV---STPVMCSDVVVYPYQIYQARLAGADALKL-IAPALPAKDLMYFHKISNALGMQCIVSVSSVKQM--LVALNLPGIRAVSISNRDMATWALDTSRVERI---LGDPEVQKGLE---------GKDITLLVEGGLQ-TKEDLDRTKAAGISCVVVGEAFMRNEDPA 895          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: CEM12188.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 119.0 bits (297), Expect = 8.500e-23
Identity = 217/889 (24.41%), Postives = 358/889 (40.27%), Query Frame = 0
Query:  104 SCAQSLVGAASPAAAVDAALQQALYQLPACASLDLAIV---AIYSSDTDEIDAILAHLVLALPGSTRVVG-WAGASLGAAVAPSPDGLGATVVGGGSTPTVSITLASIPSVSGRGFFVSEDELRLWKAQGETETGSNRNLVQGQQEDDEEMADYKRELAAAAAATGYLGPDKKWEHRAGVTLNEAYKDPPVFLLFGNLEDVSLAQV--ALQGLDRTYPGTARIGGL------SNGVVLFSREGQSPLGK------------GGRILKED--GTGLLGLALVGDIRTLTYVNQGAARMSDQ------------GIFRIEAVSEDGMTVTQ---------VSVPGSSGGSQTPAD----AGVPPAMEGGIVLALGEEGDDGVVEAGPNA--IGVGGAREGADRWSLVSVRGSKQAAAVLKDGWTIGA--EGSLRLNNRMTRVGQYLSVYKYDSTIALAQEAELIADLQKDIDDEWSKAELGVMKFRPTGVLMSKG------------------AFYPSDG-LTGSFGEALTQAL---PTAPLAGLGAGAAQFGPLDPKRSSALFQEALVVSVLACKAKRRDVREIRFFDHGRGSSASVASGGNMSPL--DLPFDPEKPFLEKGTGEVAVNRQAALIGTDVRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFD--AVQATQATIA-ASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQD 911
            S A SL    + A A   A++ A  QLP   + DLAIV   ++YSS   + D ++  +   LP    ++G   G ++G +      G      G    P+VS+TLAS+P V+ + F +   E+                                              P + W    GV  +    D P+F ++     + L  +   + GLD+ YP + ++GGL      S+   +F+    S                 G I  +     GL+GL LVGDI   T +  G   +SD+             IF+ E  S   M   +          ++ G++   +   D    A   P         L  E DD        A  +GV          S VS   S  ++  L +     +  EG L L  +  + GQ +  Y  D   A    +E +  L  D+D++          FRP G+ + KG                    +  DG L G FG+     +       L G  +   + GP +P R+ A        S    +  R  +REI+     RG S  V      SP    + + P+ P       ++ + R+   +   V +  + +++ E +  P    E MVW+KE E+  +R+  P+ NLM  V       +  ++   R  D+  +L  Q  E+G A++G+  + +P  G+L   +D  A+ +T A      G  AV++ +D  YY G +    D+  A R + VP++A D+ +Y +Q+  A+L GAD VK+   +VLSD DLQ  +K+C+ +S+  I+SV+S  QL R   L L+   ++ +++ ++  M+ +    HR+   L D
Sbjct:   83 SSALSLKANLTDATA--DAVEAARSQLPQGVTPDLAIVHACSLYSSKF-QWDGLVPQMRRMLPDVKAIIGTTTGGNIGRSAEREEPGEAQEAEG---VPSVSVTLASLPDVTIKPFQMLASEI-----------------------------------------PDKFDPAEDWISYLGVPPS----DVPLFFMYSTPRFMRLQGLDNVIIGLDQAYPESKKVGGLASTFGASSSPAIFAWSAMSSSSNFNMTALWPENVPAGEISLDTFAQDGLIGLMLVGDIDVRTRLAHGCRPVSDRFRITKCEPHKIVEIFKDEPPSPQKMVDLEELSETAQSFAALQGANAEKRMSEDGVGAADTVPIDPWSEYTRLTYELDDTDANLIKKATMLGVEQVPMQLPSPSDVSQASSAASSRYLVEELPKASFREGGL-LIQQPIQEGQTMRFYVRDMYGAQVDLSETLQRLAYDLDED--------ATFRPEGLFVLKGLDRGRKLFGKGNYEVEKLREWGYDGPLMGFFGDGAIGPMIKGGNTYLYGSCSLFVEIGPKNPDRTRA--------STPMNETTRARLREIK---RQRGGSFMV------SPFTSKVDYSPDNP-----DPDITLPRRLVNVARPVSISTIEFSLPELAPLPSHRLEEMVWSKEMEVDRLRDRYPMSNLMYQV------GEYNLRPANRPRDLYGSLCRQKAERGVALVGECMKASPNHGILKAKYDPKAIASTYADGGERRGVAAVSVHIDNKYYAGNFD---DLGAARRGSTVPIIASDIFVYAWQIVRARLAGADAVKL-VAAVLSDRDLQAFLKVCERISVQAIVSVSSREQLER--CLRLDGCKIVAINNLNFWDMQPD---VHRTTRLLTD 874          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSO55118.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_1_48_107] >PSO56132.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_10_48_56] >PSO61168.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_7_48_89] >PSO66204.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_6_48_35] >PSO68548.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_1_48_34] >PSO71497.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_3_48_40] >PSO82430.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_5_48_63] >PSO94016.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_9_48_30] >PSP03572.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_7_48_42] >PSP06621.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_12_48_29] >PSP26606.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_8_48_13] >PSP30954.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_4_48_29] >PSP33957.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_8_48_54])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQERGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSO66383.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_2_48_84] >PSO77717.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_8_48_120] >PSO88120.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QH_9_48_43] >PSO92577.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_6_48_11] >PSP02739.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_7_48_12] >PSP18430.1 indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_5_48_44])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQERGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSO80403.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_4_48_99])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQELGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSO88753.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_3_48_167])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQERGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSO95566.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium QS_6_48_18])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQERGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: PSP10132.1 (indole-3-glycerol phosphate synthase TrpC [Cyanobacteria bacterium SW_10_48_33])

HSP 1 Score: 115.5 bits (288), Expect = 9.300e-22
Identity = 75/263 (28.52%), Postives = 139/263 (52.85%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGGKHRSVEWLQDPTVQASLRARREGG 925
            + V+N  + V      PR++ E +VW KE E+   R   PL++L +            VQA     D + AL  +  E   A++ +I + +P +GV+   FD V   QA    +GA  + +  ++ ++ G ++ +  V+   +E  +P++  + V+YPYQ+YLA+L GAD + +   ++L+D DL+Y +KI  +L +TP+I V +LS++ R   L L   S++ +++R+W    V+     + +EW  +   +  ++   E G
Sbjct:   12 INVNNWRYQVALPESEPRNILEKIVWHKEMEVQRRRTRLPLLDLRKQ-----------VQASDPARDFLGALWQRKREP--ALIAEIKKASPSKGVIREDFDPVAIAQA-YQTAGASCLCVLTEEQFFLGSFETLASVR---KEVALPILCKEFVIYPYQIYLARLHGADAILL-IAAILNDRDLRYFLKIANSLGMTPLIEVHTLSEVDR--VLNLEGVSLIGINNRNWEDFSVDLQTTRQLLEWRGETLQERGIQVVSESG 254          
BLAST of NO01G04010 vs. NCBI_GenBank
Match: WP_075898414.1 (indole-3-glycerol phosphate synthase TrpC [Moorea bouillonii] >OLT59242.1 indole-3-glycerol phosphate synthase [Moorea bouillonii PNG])

HSP 1 Score: 112.8 bits (281), Expect = 6.100e-21
Identity = 71/215 (33.02%), Postives = 123/215 (57.21%), Query Frame = 0
Query:  662 VRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEAPLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISRGTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVKDALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQVKICQTLSLTPIISVASLSQLRRAAAL 877
            V++  + + V      P  + E +VW KE+E+  +RE  PL+ L +            VQ      D ++ALKS     G  ++ +I + +P +GV+   FD V   Q + +  GA A+++  DQT++ G ++++  V+ A+    VP++  + ++YPYQ+Y+A+  GAD V +   ++LSD+DLQY +KI +TLS+TP+I V + S+L R  +L
Sbjct:   12 VKIQTLHYQVALPDDKPHHILEEIVWHKEKEIDQMRESLPLVELRK-----------RVQTAPPPRDFLAALKSGKTSPG--LIAEIKKASPSKGVIREDFDPVAIAQ-SYSQGGASAISVLTDQTFFQGSWENLAKVRAAV---DVPLLCKEFIIYPYQMYMARSHGADAVLL-IAAILSDQDLQYFIKIAKTLSITPLIEVHTQSELDRVLSL 208          
The following BLAST results are available for this feature:
BLAST of NO01G04010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29333.10.000e+067.16indole-3-glycerol phosphate synthase [Nannochlorop... [more]
CBN76677.12.100e-2624.65Indole-3-glycerol-phosphate synthase [Ectocarpus s... [more]
CEM12188.18.500e-2324.41unnamed protein product [Vitrella brassicaformis C... [more]
PSO55118.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
PSO66383.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
PSO80403.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
PSO88753.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
PSO95566.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
PSP10132.19.300e-2228.52indole-3-glycerol phosphate synthase TrpC [Cyanoba... [more]
WP_075898414.16.100e-2133.02indole-3-glycerol phosphate synthase TrpC [Moorea ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007892NSK007892Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G04010.1NO01G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577254gene_413Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g4gene1294Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G04010.1NO01G04010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G04010 ID=NO01G04010|Name=NO01G04010|organism=Nannochloropsis oceanica|type=gene|length=3865bp
AAAAACACACAGGGCACAAAACAGCCTACTTGGCAAGCGTTCCGATCATC
ATCATGCGGCTTTCCGTGGTCGACCACCGCAAAGTAAGAAGACAGCCGGC
ATGTCGCGTGCTAGTGCAGGCCCAACTTCTACTTGTCCTCATTGTCGCTT
TTGTGGGCGGTGTGGCAGTCCAAGCTTTCGTTCCCCATGCTCGAAGCTAT
CCCCTGTCAAGCCGCTCTCATGGCCGCCTGTCCCGCCGGAGTAGCCGGGG
CACGCCCCTATACATGATTGACAACTTTTTCCGCTTCCACGAGAAGAACC
GCCAATTGAATTGGGACGATTATTTCGGCAAGGCCCGGTACGATCACCCC
CACGCCTTTGGGTCCTGTGCCCAGTCTTTGGTGGGGGCAGCCTCGCCAGC
AGCGGCCGTCGACGCGGCGTTGCAGCAAGCACTGTACCAGCTCCCGGCAT
GTGCCTCGTTAGATCTTGCGATTGTGGCCATCTATTCCTCGGATACTGAT
GAGATTGATGCGATCCTTGCGCATCTGGTCTTGGCATTGCCAGGCTCGAC
GAGGGTGGTAGGGTGGGCTGGCGCCAGTCTGGGAGCAGCCGTGGCACCTT
CACCGGATGGGTTGGGGGCTACGGTGGTGGGAGGTGGTAGTACGCCCACA
GTGAGTATTACACTGGCATCAATCCCTTCTGTATCGGGGCGTGGATTCTT
TGTGAGTGAGGATGAGTTGCGGTTGTGGAAAGCGCAGGGGGAGACTGAAA
CTGGCAGCAATCGGAATTTGGTGCAGGGCCAGCAGGAGGACGACGAGGAG
ATGGCCGATTATAAGCGAGAGCTTGCTGCTGCTGCTGCTGCAACGGGCTA
TTTGGGACCGGATAAAAAGTGGGAGCATCGCGCAGGGGTGACGTTGAACG
AGGCCTACAAGGATCCGCCTGTATTCTTACTGTTTGGCAATTTAGAAGAT
GTTTCTCTGGCGCAGGTGGCGCTGCAAGGCTTGGATCGCACTTATCCCGG
CACGGCCCGCATTGGAGGATTATCGAATGGGGTGGTATTATTTAGTAGAG
AGGGGCAGAGTCCTCTGGGAAAAGGAGGGAGGATTTTGAAAGAGGATGGG
ACGGGTTTGTTGGGCTTGGCGTTGGTGGGTGACATCCGGACATTGACTTA
CGTAAATCAAGGGGCTGCCCGCATGTCTGATCAAGGGATTTTTCGCATCG
AGGCCGTGAGTGAGGATGGAATGACTGTCACTCAGGTATCTGTTCCTGGC
AGTAGTGGTGGAAGTCAGACACCAGCTGACGCGGGGGTGCCTCCCGCGAT
GGAGGGAGGCATCGTTCTAGCACTAGGCGAGGAGGGGGACGACGGGGTCG
TCGAGGCAGGGCCGAATGCCATAGGGGTGGGTGGAGCGCGAGAAGGAGCT
GATAGATGGAGTCTGGTGAGTGTACGGGGGAGCAAGCAGGCGGCTGCTGT
GCTGAAGGACGGGTGGACCATTGGTGCGGAGGGAAGCTTGCGTCTGAATA
ACCGCATGACCAGAGTCGGCCAGTACCTGAGTGTCTACAAATATGACTCT
ACGATAGCTTTGGCGCAAGAAGCGGAGCTCATCGCGGACCTTCAGAAGGA
CATTGACGACGAATGGAGCAAGGCCGAACTAGGGGTTATGAAATTTCGAC
CCACTGGTGTTTTGATGTCCAAGGGAGCGTTTTATCCCTCCGATGGACTA
ACTGGATCCTTTGGAGAGGCTCTCACGCAAGCGTTACCTACCGCCCCTCT
TGCGGGCTTGGGGGCTGGAGCGGCGCAGTTTGGTCCATTAGACCCGAAGA
GAAGTTCAGCGTTGTTTCAGGAGGCGTTGGTGGTGAGTGTTTTGGCATGT
AAAGCGAAGAGGAGAGACGTGCGGGAGATTCGATTTTTCGACCATGGTCG
GGGATCGAGTGCGTCGGTGGCTTCTGGCGGGAATATGAGTCCGTTGGATT
TGCCCTTCGATCCTGAGAAACCATTTTTGGAGAAGGGGACAGGGGAGGTG
GCTGTGAACAGGCAGGCGGCTCTGATCGGAACTGACGTGAGAGTGGATAA
TATGGCATGGAATGTGCGGGAGGAGAGTGTGTATCCCCGGAGTTTGTTCG
AATGCATGGTTTGGACAAAAGAAAGGGAGCTATATTTTGTGCGAGAGGAG
GCGCCGTTGATGAATTTGATGCGAATGGTGATGATGATGATAAAGAACCC
AGACGCAGCCGTGCAGGCCAAGGCACGAGGGCTCGATGTCGTTTCGGCGC
TTAAATCCCAAGCTGAGGAGAAAGGATGGGCTGTCCTAGGTGATATCTCT
CGTGGAACGCCTTTCCAAGGTGTTCTCGCCCCACTCTTTGATGCCGTTCA
AGCAACGCAAGCGACCATCGCCGCCAGCGGGGCAGGAGCTGTGGCCCTCC
GCGTTGATCAAACGTACTACGGCGGGAAATACCAACATGTCCGTGACGTT
AAAGACGCCTTGCGCGAAACACGCGTGCCCGTCGTGGCTGATGATTTAGT
CTTGTACCCATATCAGCTCTATCTTGCCAAGCTCTTTGGTGCGGATGGCG
TGAAAATGGGACAACTCTCTGTCCTCTCCGATGAAGACCTGCAGTACCAA
GTCAAAATCTGCCAAACCTTAAGTCTGACTCCCATCATCTCAGTAGCCTC
CCTCTCTCAGCTCCGTCGCGCTGCAGCCTTACCATTGAATCAATCCTCGG
TTTTGACGCTTGATGATAGGGATTGGGCGACTATGAGGGTTAATCCTGGC
GGGAAACACCGGTCAGTAGAGTGGTTGCAAGACCCGACCGTGCAAGCCAG
CTTGAGAGCCAGGAGGGAGGGAGGGGCAGGTGCTGGAGGGGCGCCTTTGA
TTTTGGTTGAGGGTCGGAGTAAATTGACGGAGGAAGAGAAGGATGAATTA
AGAGGTTTGGGTGTGAGTGGAGAGGTGTTTGCCTTCGGGGACTTGCCGGC
GAGTGAGCGAATTGAGGCCGGGAGAAAGGGAAAGATGACAGCAACCGTAG
GTGGGGTCGTAGCTGCTGGTGGTGGCAACAGCATGGAGAGCTTGAAGGAG
TTGCTTCGGGCTAAAGCAGCGGCGTCGTCCACCAGTGATCCTTAGGCGAG
GCGAGATGCTTTGTTTTCACATATCATAGATGCTTGCATGTATGTCCACG
CATGTGCTATGTAAAGAAGTTAAAGAAGATAGAAATTATCTCCGGTAAAT
CATATGATGAGATAGTGTGTGTCATCTTGAGATAAAACCAGGAGCATCCG
GTTCGTTGTGGCTTTGAAAGAGCCCGCGAAAATTGAGCCAACTTATTCTT
CCGAAAAGACAGCATTAACTCATTTTCCTTTTCTTATTTCTCGCCAACAC
CCCAAAAGTATAGCCATGCTCACAATGACAACACCAACAACGACAACATT
TCAAACCCTCCACGGTGGTTGCCACTGCGGGCGGGTCCGCTTTTCCTGCA
CTGTCGAAACATCCACTCCCCTCGTGGAGTGTAACTGCAGCCGCTGTAGC
CAGCTTGGATTCCTCCACCTCATAGTCCCGGCTGCTGCTGATTTTTGCCT
TGCCCCGGGATCACAAGAACACCTTATGGAATATAGGTTTAACACCCAAA
AAGCCAAGCACTTGTTTTGTAAACTCTGTGGAGTGCAATCATTTTATCAT
CCTCGTTCTCATCCGGAGGGAATCAGTGTGAACGCACGGTGTCTGGATGG
AGAGGTGTCCTTGCAGAGGGCCGTGAAGGCTTTCAATGGACGACAGTGGG
AGGCGCATGTTGCTGAGATAATGAAGTAGTTTCTCTTTCGAAGGAATTAA
TGAGTCCAATATCCCCCTCCCAAAAACAAAAAAGTATTAGTTGTAGATAC
TTGTAGATATAAAGT
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protein sequence of NO01G04010.1

>NO01G04010.1-protein ID=NO01G04010.1-protein|Name=NO01G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1014bp
MRLSVVDHRKVRRQPACRVLVQAQLLLVLIVAFVGGVAVQAFVPHARSYP
LSSRSHGRLSRRSSRGTPLYMIDNFFRFHEKNRQLNWDDYFGKARYDHPH
AFGSCAQSLVGAASPAAAVDAALQQALYQLPACASLDLAIVAIYSSDTDE
IDAILAHLVLALPGSTRVVGWAGASLGAAVAPSPDGLGATVVGGGSTPTV
SITLASIPSVSGRGFFVSEDELRLWKAQGETETGSNRNLVQGQQEDDEEM
ADYKRELAAAAAATGYLGPDKKWEHRAGVTLNEAYKDPPVFLLFGNLEDV
SLAQVALQGLDRTYPGTARIGGLSNGVVLFSREGQSPLGKGGRILKEDGT
GLLGLALVGDIRTLTYVNQGAARMSDQGIFRIEAVSEDGMTVTQVSVPGS
SGGSQTPADAGVPPAMEGGIVLALGEEGDDGVVEAGPNAIGVGGAREGAD
RWSLVSVRGSKQAAAVLKDGWTIGAEGSLRLNNRMTRVGQYLSVYKYDST
IALAQEAELIADLQKDIDDEWSKAELGVMKFRPTGVLMSKGAFYPSDGLT
GSFGEALTQALPTAPLAGLGAGAAQFGPLDPKRSSALFQEALVVSVLACK
AKRRDVREIRFFDHGRGSSASVASGGNMSPLDLPFDPEKPFLEKGTGEVA
VNRQAALIGTDVRVDNMAWNVREESVYPRSLFECMVWTKERELYFVREEA
PLMNLMRMVMMMIKNPDAAVQAKARGLDVVSALKSQAEEKGWAVLGDISR
GTPFQGVLAPLFDAVQATQATIAASGAGAVALRVDQTYYGGKYQHVRDVK
DALRETRVPVVADDLVLYPYQLYLAKLFGADGVKMGQLSVLSDEDLQYQV
KICQTLSLTPIISVASLSQLRRAAALPLNQSSVLTLDDRDWATMRVNPGG
KHRSVEWLQDPTVQASLRARREGGAGAGGAPLILVEGRSKLTEEEKDELR
GLGVSGEVFAFGDLPASERIEAGRKGKMTATVGGVVAAGGGNSMESLKEL
LRAKAAASSTSDP*
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Synonyms
Publications