NO01G03980, NO01G03980 (gene) Nannochloropsis oceanica

Overview
NameNO01G03980
Unique NameNO01G03980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2350
Alignment locationchr1:1061780..1064129 -

Link to JBrowse

Properties
Property NameValue
DescriptionU3 small nucleolar ribonucleoprotein mpp10
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1061780..1064129 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0034457Mpp10 complex
GO:0005732small nucleolar ribonucleoprotein complex
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR012173snoRNP_Mpp10
Homology
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: EWM29314.1 (u3 small nucleolar ribonucleoprotein mpp10, partial [Nannochloropsis gaditana])

HSP 1 Score: 411.4 bits (1056), Expect = 6.000e-111
Identity = 233/338 (68.93%), Postives = 269/338 (79.59%), Query Frame = 0 
Query:  401 KRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGLQEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL 739
            +RKEIAELE ELLSERPWELRGEVKA +RPENSLLEAVVDVELARRPEVLMTVE+ QS+E+MIK RV E RWDDVVP+ LGEEVMMN  RRG   +EELPEVSQEK+ EGLG +YEKEY+RLAMGQ                  +AALFR +  KLDALSNFNF PKAA VE++VQ+NVPAIAMEEVLP+AVG   T APEEVHGKKRGREGV+RE+AE+DQ DR R+RR KKA           E++LV+R+NPGLGNKYAKEK++SEI++SGKVV GT ++ SQ+GAYSTSGKFFAGLQEEVS HGGAYAK++ T  G E+ K+  +  GGN LKL
Sbjct:   92 RRKEIAELERELLSERPWELRGEVKATERPENSLLEAVVDVELARRPEVLMTVERSQSLEEMIKARVAEGRWDDVVPQALGEEVMMN--RRGH--KEELPEVSQEKAGEGLGEVYEKEYLRLAMGQ------EGETKESKEKAELAALFRKLSAKLDALSNFNFTPKAAHVEVSVQSNVPAIAMEEVLPMAVGQGSTLAPEEVHGKKRGREGVVRESAEMDQGDRRRLRRGKKAXXXXXXXXXXAEDRLVHRLNPGLGNKYAKEKLQSEIRSSGKVVLGTKDSGSQKGAYSTSGKFFAGLQEEVSKHGGAYAKQRST--GLESEKK--KFKGGNALKL 415
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: GAX23615.1 (U3 small nucleolar RNA-associated protein MPP10 [Fistulifera solaris])

HSP 1 Score: 228.8 bits (582), Expect = 5.500e-56
Identity = 148/324 (45.68%), Postives = 204/324 (62.96%), Query Frame = 0 
Query:  404 EIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQA-NVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLG--NKYAKEKMRSEIKASGKVVQGTLEAASQ-QGAYSTSGKFFAGLQEE----VSAHGGAYAKRKVTEK 720
            +I +LE ++L+E+PW+++GE  + DRP NSLL++  + E+A +   ++TVE   SIE+MIK+R++EE WDDVVP+ L +  +   ++RG     ELPEVSQEKS   LG +YE+EY++ A G                   M ALF  +C KLDALSN+ F P+  + E  V+    PAIAMEEVLPL V  A   APEEV+G+K GR+ VLR  +EL+Q +R R+R  KKAARRK RKQ   +EKL++R+ PGLG  N Y K KMR E++A+    +GT+    Q    YS+S  FF  LQ+E    V++   A AK  VTE+
Sbjct:  452 QIQQLEKDMLAEKPWQMKGETTSSDRPVNSLLDSTPEFEIATKMAPIVTVEHTASIEEMIKKRILEEDWDDVVPRELPD--VGWHKKRG-----ELPEVSQEKSKLSLGELYEREYLKKATGY-DVDAAEKETEEEKAINEMKALFANLCSKLDALSNYQFAPRPIEDEAEVRTITKPAIAMEEVLPLHVSDARGVAPEEVYGRKHGRDSVLRADSELEQQERKRLRSSKKAARRKIRKQKEADEKLISRLQPGLGLNNPYEKRKMREELQAARS--RGTVTTGKQDSNEYSSSTTFFKRLQQEAHETVASGSKAAAKTSVTER 765
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: XP_002907509.1 (U3 small nucleolar ribonucleoprotein, putative [Phytophthora infestans T30-4] >EEY64073.1 U3 small nucleolar ribonucleoprotein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 221.5 bits (563), Expect = 8.800e-54
Identity = 137/305 (44.92%), Postives = 194/305 (63.61%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK ARRK  +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:   47 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDKKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELHVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHARRKENRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 334
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: XP_024580041.1 (u3 small nucleolar [Plasmopara halstedii] >CEG43672.1 u3 small nucleolar [Plasmopara halstedii])

HSP 1 Score: 216.5 bits (550), Expect = 2.800e-52
Identity = 135/304 (44.41%), Postives = 190/304 (62.50%), Query Frame = 0 
Query:  403 KEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            KEI ELE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++EE ++DV+ K  G E          + +  L +VS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN+ F PK A  E+ V+  VPAIAMEE++P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK AR   ++Q   +E+LV ++NPGLGNKYAK+KM   I  +  +  G  +E +S+Q  +S S  FF  LQ+EV
Sbjct:  305 KEIQELEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEEDYNDVIRKFAGNE---------EDRKNALEDVSMEKSKEGLGEIYEKEYMKTAMG------FEPDDESKQDQEEIEVMFKSLCWKLDALSNYYFTPKPAVKELQVKPAVPAIAMEEIVPISVSDANLKAPEEVYAKKRKRGEAVLQSKEEMTQTERKALRNAKKHARXXXKRQREFDERLVAKLNPGLGNKYAKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKDFFTRLQDEV 591
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: CBJ31506.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 214.9 bits (546), Expect = 8.200e-52
Identity = 145/337 (43.03%), Postives = 191/337 (56.68%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGREG-VLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGLQEEVSAHGGAYAKRKVTEKGQE-TAKELARTAGGNRL 737
            + +I++ E ELL+E+PW LRGEV + DRP+NSLLEA VDVE A R     T E   ++  MIK+R ++  WDDV P+ L          +G    +E P +SQ+KS EGLG +YEKE+++  MG                   +  LF  +CGKLDAL NF++ PKAA  EM VQA+V AIAMEEVLP +V  A+  APEE++ KKRGRE   L   AE+ Q DR R R                 +KLV+++NPGLGNKY K KM  +I+ +  V   T    S    +STS KFF+ LQE V+      A  K T KG +  AK+ ++ A   RL
Sbjct:  299 KSKISDQERELLAEKPWALRGEVHSHDRPQNSLLEATVDVERATRVAPPPTAEHAMTLLDMIKKRCLDSNWDDVTPRDL----------QGPTVRKEAPHLSQDKSKEGLGELYEKEFLKKTMG------VTEDDPQKGLKNELKHLFSKLCGKLDALCNFHYTPKAAIPEMKVQADVAAIAMEEVLPSSVADAEALAPEELYKKKRGREAEFLEGGAEMSQEDRKRSRSXXXXXXXXXXXXXXAAQKLVSKLNPGLGNKYEKAKMMRDIQGAKNVTTATGGEESTGREFSTSAKFFSQLQESVT------ASVKSTGKGMDGDAKDTSKKAAQLRL 613
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: ETI34265.1 (hypothetical protein F443_19231 [Phytophthora parasitica P1569])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 134/305 (43.93%), Postives = 191/305 (62.62%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK A     +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:  301 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHAXXXXXRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 588
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: ETI34266.1 (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 134/305 (43.93%), Postives = 191/305 (62.62%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK A     +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:  219 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHAXXXXXRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 506
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: ETK74571.1 (hypothetical protein L915_18656 [Phytophthora parasitica])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 134/305 (43.93%), Postives = 191/305 (62.62%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK A     +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:  301 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHAXXXXXRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 588
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: ETK74572.1 (hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 134/305 (43.93%), Postives = 191/305 (62.62%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK A     +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:  219 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHAXXXXXRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 506
[Close]
BLAST of NO01G03980 vs. NCBI_GenBank
Match: ETL27998.1 (hypothetical protein L916_18560 [Phytophthora parasitica])

HSP 1 Score: 214.5 bits (545), Expect = 1.100e-51
Identity = 134/305 (43.93%), Postives = 191/305 (62.62%), Query Frame = 0 
Query:  402 RKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVLMTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELPEVSQEKSTEGLGAIYEKEYMRLAMGQGXXXXXXXXXXXXXXXXXMAALFRLVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAPEEVHGKKRGR-EGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLVNRINPGLGNKYAKEKMRSEIKASGKVVQG-TLEAASQQGAYSTSGKFFAGLQEEV 705
            +KEI +LE E +SE+PW L+GEV++  RPENSLLEAV+D +   +   ++T E   ++E+MIK+R++E+ +DDV+ K  G E          + + +L EVS EKS EGLG IYEKEYM+ AMG                   +  +F+ +C KLDALSN++F PK A  E+ V+  VPAIAMEEV+P++V  A+ +APEEV+ KKR R E VL+   E+ Q +R  +R  KK A     +Q   +E+LV ++NPGLGNKY K+KM   I  +  +  G  +E +S+Q  +S S +FF  LQ+EV
Sbjct:  301 QKEIKDLEQEAISEKPWLLKGEVRSAARPENSLLEAVLDYDRPVKAAPVITEEVSIALEEMIKKRILEDDYDDVIRKFAGNE---------EDQKNKLEEVSMEKSKEGLGEIYEKEYMKTAMG------FEADDESKQDQEEIEVMFKSLCWKLDALSNYHFTPKPAVKELQVKPAVPAIAMEEVVPISVSDANLKAPEEVYEKKRKRGEAVLQSKEEMTQTERKALRNAKKHAXXXXXRQREFDERLVAKLNPGLGNKYEKKKMLESIAGAKNITTGKQIEGSSKQ--FSNSKEFFTRLQDEV 588
The following BLAST results are available for this feature:
BLAST of NO01G03980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29314.16.000e-11168.93u3 small nucleolar ribonucleoprotein mpp10, partia... [more]
GAX23615.15.500e-5645.68U3 small nucleolar RNA-associated protein MPP10 [F... [more]
XP_002907509.18.800e-5444.92U3 small nucleolar ribonucleoprotein, putative [Ph... [more]
XP_024580041.12.800e-5244.41u3 small nucleolar [Plasmopara halstedii] >CEG4367... [more]
CBJ31506.18.200e-5243.03conserved unknown protein [Ectocarpus siliculosus][more]
ETI34265.11.100e-5143.93hypothetical protein F443_19231 [Phytophthora para... [more]
ETI34266.11.100e-5143.93hypothetical protein, variant [Phytophthora parasi... [more]
ETK74571.11.100e-5143.93hypothetical protein L915_18656 [Phytophthora para... [more]
ETK74572.11.100e-5143.93hypothetical protein, variant [Phytophthora parasi... [more]
ETL27998.11.100e-5143.93hypothetical protein L916_18560 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007895NSK007895Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03980.1NO01G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577245gene_409Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100205g1gene1297Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03980.1NO01G03980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03980 ID=NO01G03980|Name=NO01G03980|organism=Nannochloropsis oceanica|type=gene|length=2350bp
ACAGACCTTACAAACACACGTCAAAGCACCATGACAAGAAAGAATAAAAT
ACAAGCAGTAAATAGAGATGACAGCGGCGACAACACAGGCGAGGCAGTGC
GTATGGTCAACTCCAGCTCTAGTACTGGGCCCGTTGACCTCCCCCTCAGC
ACCATCGAAGGAGCCTTGGCGCGGCTCGAGTACCTGGCAGACGCCCCCGA
AAGCTTTTGTGCACCGCCATCAGATATAGCAGAGgtgtgtattttgtaag
gattcggtagcatacccttttccaagtctcaaagtacccatcttccctct
cccaattttccccctttcttcccccccccccacccagAGCCTCACTCAAG
TGCTTAAGACCGTCTTCGACCATGCCCGGAAGACTCAGCCCATCAAACTC
GGGCCTCTACAAGAGTTGTTTGTAGAGGGGTTTGATACCGAGACGCTATG
GGAGCAGCTGCAGTTGCGGAACCCGGCCGTACGGAAGTTGGTGGTGAAAG
TGACGAGAAGGCTCATGGAGAAAGAGAAGGAGGAGGGAGGGGCAACAATG
ATGTTTGAAAAGGAGGAAGAGGATATAGAGGAGAGGAAAGAGAACAAGAG
TGAGGGTGAGGAAGAGGAGAGCGATGTGGACGAGGAGGAAGAGGATGCGC
GGATGGAGCGGTTGGTGGAAGAGAGTGGGGAGGAAGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGA
TAAGGACGATGACGAGGAGGAAAAAGAGGACGCGGAGGGGTCCGCAGACG
AATCTGACAACGTGAAAGACAATGACAAGGACGAAGAGGAGGGTGTTGCC
AAGGCGAGGAGGAAGAAGGGCAAAAAGGGCGCACCCTTGGATAAGGAAGC
GTTGAATGACGGGTTCTTCGATTGGGAGGAGATGGAGAAGTTTGCGGATG
AAATGGACGAAGAGGAGTTCAATGACGACGAGGAAGATGAAAGTGATGAT
GATGATGAGGAGGAGGAGGAGGAGGAGGATGGAAAGGAGATTCGTTATCA
GGACTTCTGGGGGAATGAGGAGGAGGACGAGGAAGAGCCGAAAGGGGAGG
AGAAGGGGGGAGATAGTAAATCGGGTGCCTTTGTGACGAGCAGCAAGGAG
GGGAAACGGAAATTGAGTAACCGGAGCCGGCAGGCGCATGATGAGGCGGA
AGATGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGATGAGGACCCTAAA
ACCCTTACAAGCTTCCAGCGACAGCAGCGAACAAAACGCAAGGAGATTGC
CGAGTTGGAGCATGAGTTGTTGTCGGAACGCCCGTGGGAATTGCGGGGAG
AGGTCAAGGCGGGAGATAGGCCGGAGAACTCGCTCTTGGAAGCAGTGGTG
GACGTGGAGCTGGCACGACGACCCGAGGTGTTAATGACGGTTGAAAAGGG
CCAGTCCATTGAACAGATGATCAAGCAGAGGGTGATGGAAGAGAGGTGGG
ATGACGTCGTCCCCAAGACATTAGGGGAGGAGGTGATGATGAACGGGAGG
AGGAGGGGGAGGGAGGGAGAGGAGGAGCTGCCGGAGGTGTCTCAGGAGAA
GTCGACGGAGGGCCTTGGAGCGATTTATGAGAAGGAGTACATGCGGTTAG
CCATGGGCCAGGGGGGGGGGGAAGGAGGGGAGAAAGAGACGAAGGAAACT
CGGGAAAAGATAGAGATGGCGGCATTGTTTCGATTGGTGTGTGGGAAATT
GGACGCGCTGTCTAACTTCAATTTCGTCCCGAAGGCCGCACAGGTTGAGA
TGACGGTGCAGGCGAACGTGCCTGCTATCGCGATGGAAGAGGTGTTGCCT
TTGGCGGTCGGACACGCCGACACCCAGGCACCGGAGGAGGTGCATGGGAA
GAAGCGTGGAAGGGAGGGGGTGTTGAGAGAAGCGGCGGAATTGGACCAAG
CGGATCGGAACAGGATTAGGAGGGATAAGAAGGCAGCACGGCGCAAGGCC
AGAAAGCAGGCAGCAACGGAGGAGAAACTGGTGAATCGCATCAACCCCGG
TCTGGGGAACAAATACGCGAAAGAGAAAATGCGGTCAGAGATCAAGGCGA
GTGGGAAGGTGGTGCAAGGCACGTTGGAAGCAGCGAGTCAACAAGGCGCA
TACAGTACTTCCGGGAAGTTCTTTGCGGGCCTTCAGGAGGAGGTGTCGGC
GCATGGAGGGGCGTATGCGAAGAGGAAGGTGACGGAGAAGGGGCAAGAGA
CGGCGAAGGAGCTGGCGCGGACGGCGGGGGGGAACAGATTGAAGCTTTAG
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protein sequence of NO01G03980.1

>NO01G03980.1-protein ID=NO01G03980.1-protein|Name=NO01G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bp
MTRKNKIQAVNRDDSGDNTGEAVRMVNSSSSTGPVDLPLSTIEGALARLE
YLADAPESFCAPPSDIAESLTQVLKTVFDHARKTQPIKLGPLQELFVEGF
DTETLWEQLQLRNPAVRKLVVKVTRRLMEKEKEEGGATMMFEKEEEDIEE
RKENKSEGEEEESDVDEEEEDARMERLVEESGEEEEEEEEEEEEEEEEEE
EEEEDDKDDDEEEKEDAEGSADESDNVKDNDKDEEEGVAKARRKKGKKGA
PLDKEALNDGFFDWEEMEKFADEMDEEEFNDDEEDESDDDDEEEEEEEDG
KEIRYQDFWGNEEEDEEEPKGEEKGGDSKSGAFVTSSKEGKRKLSNRSRQ
AHDEAEDGDEEEEEEEEEEEEEEEEEEEEEEEKEDEDPKTLTSFQRQQRT
KRKEIAELEHELLSERPWELRGEVKAGDRPENSLLEAVVDVELARRPEVL
MTVEKGQSIEQMIKQRVMEERWDDVVPKTLGEEVMMNGRRRGREGEEELP
EVSQEKSTEGLGAIYEKEYMRLAMGQGGGEGGEKETKETREKIEMAALFR
LVCGKLDALSNFNFVPKAAQVEMTVQANVPAIAMEEVLPLAVGHADTQAP
EEVHGKKRGREGVLREAAELDQADRNRIRRDKKAARRKARKQAATEEKLV
NRINPGLGNKYAKEKMRSEIKASGKVVQGTLEAASQQGAYSTSGKFFAGL
QEEVSAHGGAYAKRKVTEKGQETAKELARTAGGNRLKL*
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Synonyms
Publications