NO01G03880, NO01G03880 (gene) Nannochloropsis oceanica

Overview
NameNO01G03880
Unique NameNO01G03880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2225
Alignment locationchr1:1036669..1038893 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1036669..1038893 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO01G03880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03880.1NO01G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577216gene_399Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g11gene1307Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03880.1NO01G03880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03880 ID=NO01G03880|Name=NO01G03880|organism=Nannochloropsis oceanica|type=gene|length=2225bp
TTTGAAACGGTCGTCGTGTGCCGCCGTGATTCGGTTTTGCCCCCTGCGCC
CATGCACGCTTCGTGCTTCGTCGTCGTCCGCGACTCTTCCCGGGAAACCA
GGCACAGCCTACCCACTCCCATGTACAAGAGAGACAAGCTTAACAGCCAG
CAGGACGGATTCGGTTGACTTTGTGGGTGCCAGACAGTGACTTTCACCTT
TATTCGGCCCTGGAGCCTGAGCCCATTTTTGCTTGGTCGTTCATTCCTTC
TGCTCCTGTAGCACTCGTATACCACTAGCACCATCGTTGGACCCACAGCA
CAGGTGCTGCCAGCCTTTAGAGTCCTTCTTCTGCCTTTTGCCTGGGTAGG
CGGGACGACTTCCAACCACCCGTCTTGCTCGTCCCCCCCGGTAGGCCCTT
TCTGCCGAGCACAAGACATTCATGAGCAACCTCTGAGTCTTCGTGAGTTG
ACGCTTCCGCCCACCACGACACAGTCAGGCACCACAACCCCACAGCACTC
ATACGATAGAGCCGGCATGCTGGAGACCTTCCCCTATTCACCATCATGCA
GGGCCCGGGCCCGGCGGACTGCGCCCATATATATCTTATAATAGCTCCCA
GCGAACCATATCCCTCCGGTACCACGCAAAGAGCACCTCACCACGGCGGC
TTCTCAACCGAAGAAGGTCCAATGACCAACTCGCGCAAATCACTGCCATT
GCCAGAGAATACGTTTCATCGCCTTTCACCAATCTTCGCTCACCGATACC
CATCACCTTCTCTACCCCCTAGACTCTACCATCTGATCCTAACAAATCCA
CAGAGACCACCACCATCCTGTCTCCTCAACCAAAAATGTCGTCCACTTTC
CGCACGAATCGTCGGCTGGTTTTCCTCTTCGGGCTGCTCATCCTCTTGGT
GTGCTTCGTGTCCATGGGGGCTGGCAAAGTGGCAAATGCTAAGGGCAAGG
CGCTTGTTGAAGAAAACGAGGAGGATGAGTACGACGAGGAAAGGGAGATG
ATGGAGGAATTCGACGAGGACGAGGAGGATGAAGACGAGGATATTGATGA
ATGGGATGAGGAGGATATGGATGAGGAAGGAGAGGACCGGAAATTGACGA
TTGACGATTTGGACGGCATGATCGACAAAGAGGATCTGATGCGCCAGCTC
GATGCGATGGGACTGACATTGGATgtacgtatgcttgggaagagggagga
aagtgggctgggtggttggggaggggtgcgggatgagagcattaagtgtg
ctcctaccagtatgctattgttttcgatgtgagggtagcatcacgtcaca
ccttatgaatcaagccaaccactcattctttattcattgcaataaaaact
tttatacagGATGTGGAGATTTCGTTTGATGAAGAGGAGGAGGGGATGGA
TCGCGACTTGGAGGACGAGGACGAGCTCGATGAGGAGGATGAGGAGGAGT
TCGATGAGGAGGAGTTCGATGAGGAGGATGAGGAGGATCGCGACTTGGAG
GAGGAGGATGAATTCGATGAGGAGGATGAACTCGATGAGGAGGAGGATGA
GGAGGATCGCGACTTGGAGGAGGAGGATGAATTCGATGAGGAGGAGGAGG
AGGATGAGTTCGATGAGGAGGATGAACTCGATGAGGAGGAGGAGGAGGAT
CGCGACTTGGAGGAGGAGGATGAGTTCGATGAGGAGGATGAACTCGATGA
GGAGGAGGAGGAGGAGGATCGCGACTTGGAGGAGGAGGATGAGTTTGATG
ATGAGGATGAATTCGATGAGGAGGAGGATGAGGAGGAGGATCGCGACTTG
GAGGACGAGGAAGACTTCGATGAGGAGTTCGATGAGGACTTTGATGAGGA
TGAAGAGTTTTAAATATTTTTCAATTGGGACGGGTATCGTGCAATTAATT
TACAAGGAAAAAAGAGGGAGACAGGCTCGTGGCAAATGGAAGCATAGCAA
ACCAGGAAGAACGATCGTCATTTTCGTGGACCCCAGCGACACGCAAAAGA
AAAGAAAGACAAAAAATATATGGAATCTAACATAAGGAGATAAGGCGAGG
GGAAGGTGTAGAACGCAACAGAGTGGAAAGTACACGAATAGAGGAAAGAC
AGACCGTGTGACACGCCTTGGGGACGGGACGCAACCACGGAATTATTCAA
GCGAAGGAAGGCAAAGCGAAAGGCGTAATCAGCTCCAAAAAGAATAAACA
GAGTCGAGGAGCAATTGTGATATGC
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protein sequence of NO01G03880.1

>NO01G03880.1-protein ID=NO01G03880.1-protein|Name=NO01G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MSSTFRTNRRLVFLFGLLILLVCFVSMGAGKVANAKGKALVEENEEDEYD
EEREMMEEFDEDEEDEDEDIDEWDEEDMDEEGEDRKLTIDDLDGMIDKED
LMRQLDAMGLTLDDVEISFDEEEEGMDRDLEDEDELDEEDEEEFDEEEFD
EEDEEDRDLEEEDEFDEEDELDEEEDEEDRDLEEEDEFDEEEEEDEFDEE
DELDEEEEEDRDLEEEDEFDEEDELDEEEEEEDRDLEEEDEFDDEDEFDE
EEDEEEDRDLEDEEDFDEEFDEDFDEDEEF*
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Synonyms
Publications