NO01G03860, NO01G03860 (gene) Nannochloropsis oceanica

Overview
NameNO01G03860
Unique NameNO01G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1171
Alignment locationchr1:1032397..1033567 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein l29
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1032397..1033567 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e
Homology
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: KMZ59500.1 (60S ribosomal protein L29 [Zostera marina])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKPK   + S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKKQRNSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: KMZ76232.1 (60S ribosomal protein L29 [Zostera marina])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKPK   + S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKKQRNSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: KZV17025.1 (hypothetical protein F511_20824 [Dorcoceras hygrometricum])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHN 114
            MAKSKNHT  NQSFKAHRNGIKKPK +   S KGMDPK+LRNQR+A+KHN
Sbjct:    1 MAKSKNHTAHNQSFKAHRNGIKKPKRHRHSSTKGMDPKFLRNQRYARKHN 50
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: OVA02549.1 (Ribosomal protein L29e [Macleaya cordata])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKP+ +   S KGMDPK+LRNQR+AKKHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: OVA16807.1 (Ribosomal protein L29e [Macleaya cordata])

HSP 1 Score: 81.3 bits (199), Expect = 2.300e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKP+ +   S KGMDPK+LRNQR+AKKHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: OAY67217.1 (60S ribosomal protein L29-1 [Ananas comosus])

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-12
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 0 
Query:   19 VFSGAITALRPYRSPPPHSLTHMPSSCPCALHLERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            + S  +++  P   P P S    PSS                +  MAKSKNHT  NQS+KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK
Sbjct:   24 ISSSNLSSATPKPPPNPRSTEISPSS---------------QSGEMAKSKNHTAHNQSYKAHKNGIKKPKGHRQTSTKGMDPKFLRNQRYARKHNK 104
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_020268382.1 (60S ribosomal protein L29-1-like [Asparagus officinalis])

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-12
Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAH+NGIKKPK + + S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKKHRNASTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: OTG34681.1 (putative ribosomal protein L29e [Helianthus annuus])

HSP 1 Score: 80.9 bits (198), Expect = 3.100e-12
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 0 
Query:   50 HLERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            H  +R P    +  MAKSKNHT  NQS+KAHRNGIKKP+ +   S KGMDPK+LRNQR+A+KHNK
Sbjct:   45 HSHKRHP---ISFLMAKSKNHTAHNQSYKAHRNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNK 106
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_003568634.1 (60S ribosomal protein L29-1 [Brachypodium distachyon] >XP_010231510.1 60S ribosomal protein L29-1 [Brachypodium distachyon] >KQK06752.1 hypothetical protein BRADI_2g28170v3 [Brachypodium distachyon] >KQK06753.1 hypothetical protein BRADI_2g28170v3 [Brachypodium distachyon] >KQK06754.1 hypothetical protein BRADI_2g28170v3 [Brachypodium distachyon])

HSP 1 Score: 80.5 bits (197), Expect = 4.000e-12
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVV 117
            MAKSKNHT  NQS+KAHRNGIKKPK     S KGMDPK+LRNQR+++KHNK V
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKRQRQTSTKGMDPKFLRNQRYSRKHNKKV 53
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_021834993.1 (60S ribosomal protein L29-1-like [Spinacia oleracea] >KNA15842.1 hypothetical protein SOVF_094520 [Spinacia oleracea])

HSP 1 Score: 80.5 bits (197), Expect = 4.000e-12
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVV 117
            MAKSKNHT  NQS+KAH+NGIKKP+ +   S KGMDPK+LRNQR+A+KHNK V
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPRKHRHSSTKGMDPKFLRNQRYARKHNKKV 53
The following BLAST results are available for this feature:
BLAST of NO01G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KMZ59500.12.300e-1276.4760S ribosomal protein L29 [Zostera marina][more]
KMZ76232.12.300e-1276.4760S ribosomal protein L29 [Zostera marina][more]
KZV17025.12.300e-1278.00hypothetical protein F511_20824 [Dorcoceras hygrom... [more]
OVA02549.12.300e-1276.47Ribosomal protein L29e [Macleaya cordata][more]
OVA16807.12.300e-1276.47Ribosomal protein L29e [Macleaya cordata][more]
OAY67217.13.100e-1247.9260S ribosomal protein L29-1 [Ananas comosus][more]
XP_020268382.13.100e-1274.5160S ribosomal protein L29-1-like [Asparagus offici... [more]
OTG34681.13.100e-1263.08putative ribosomal protein L29e [Helianthus annuus... [more]
XP_003568634.14.000e-1273.5860S ribosomal protein L29-1 [Brachypodium distachy... [more]
XP_021834993.14.000e-1271.7060S ribosomal protein L29-1-like [Spinacia olerace... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007911NSK007911Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03860.1NO01G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100136g12gene1308Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03860.1NO01G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03860 ID=NO01G03860|Name=NO01G03860|organism=Nannochloropsis oceanica|type=gene|length=1171bp
ATGGGAGGACACATGGGATGTGCCATTCTGATGACGGTCCCGCGAGCACC
CTCTGTGTTTTCGGGCGCCATTACAGCCCTGCGGCCGTACCGCTCGCCGC
CTCCACACAGCCTCACTCACATGCCGTCTTCATGCCCATGCGCTCTCCAC
TTGgtatgcttgctttagaggattattgggcaagaatgagtgacgttgtt
gggtggccagcaaacgcttccgcaacgcgcttacgattggtggtggtggg
cttgcctccctcctgtctgctttctttgcttccttatgcgtgcagtcatt
atctcacccctattttctcatgaccatcacagGAAAGAAGAGAGCCTCCT
CTCCTTACAACAGCAGCCATGGCCAAGgtacgtttcgtggaggacgcgga
ggagtaaaggtttcgaaaggggatggagggagggagagatggcatcgagg
agggggacgatgagcagataaagcgaattggagcatgcttacgggatgta
gtggatgccggaggcagaggaagagtgttaggccatgctatgggtttgcg
gaaatgtgcccgacaaccgtgggcgggagctggaggccgaggttcctctc
gcgtgatgcttgcatcgatcgagcggccccctctaacccttaatttgcct
tttcctctccgtccccccttcctaatcccatcgcagTCCAAGAACCACAC
GAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCATCAAGAAGCCCA
AGAACTACGTCTCCAAGTCCCTCAAGGGGgtaagtgtcgtcggaatgatt
tctattttattattatttttattttccatacatactagtgcgtggattgt
ggtgcaaatttgcttggattgagagtcatagcatacttctgtctttattt
tatccggtggctttggcaagctatgttaattaattcacttttgactgatc
acttcatgtgctgtttttcgtaatcgtgtatgctgtaatgcttctactct
tctcttctcctgcctctccccctaaactctccctccctccctccttcctt
ccctccctccctccctccttccctcccctcaccttcacatttccagATGG
ACCCCAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTC
GTCAAGGTAGTGAAGGCATAA
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protein sequence of NO01G03860.1

>NO01G03860.1-protein ID=NO01G03860.1-protein|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MGGHMGCAILMTVPRAPSVFSGAITALRPYRSPPPHSLTHMPSSCPCALH
LERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDP
KYLRNQRFAKKHNKVVKVVKA*
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Synonyms
Publications