NO01G03860, NO01G03860 (gene) Nannochloropsis oceanica

Overview
NameNO01G03860
Unique NameNO01G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1171
Alignment locationchr1:1032397..1033567 +

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein l29
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1032397..1033567 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR002673Ribosomal_L29e
Homology
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: EWM29317.1 (ribosomal protein l29 [Nannochloropsis gaditana])

HSP 1 Score: 114.0 bits (284), Expect = 3.300e-22
Identity = 56/65 (86.15%), Postives = 60/65 (92.31%), Query Frame = 0 
Query:   57 PLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKVVKA 122
            P++ ++ MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVK   A
Sbjct:   14 PVVKSSVMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKTAGA 78
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_007509507.1 (PREDICTED: 60S ribosomal protein L29-like [Bathycoccus prasinos] >CCO19310.1 PREDICTED: 60S ribosomal protein L29-like [Bathycoccus prasinos])

HSP 1 Score: 85.9 bits (211), Expect = 9.500e-14
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKV 116
            MAKS NHT  NQS+KAHRNGIKKPK +  KSLKGMDPK+LRNQ+F KKHNKV
Sbjct:    1 MAKSTNHTAHNQSYKAHRNGIKKPKKHAKKSLKGMDPKFLRNQKFCKKHNKV 52
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: AAX48863.1 (L29 [Suberites domuncula])

HSP 1 Score: 83.2 bits (204), Expect = 6.200e-13
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHTN NQSFKAHRNG+KKP+   S SLKG+DPK+L+N RFAKKHNK
Sbjct:    1 MAKSKNHTNHNQSFKAHRNGMKKPRRTRSPSLKGVDPKFLKNMRFAKKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_016552100.1 (PREDICTED: 60S ribosomal protein L29-1-like [Capsicum annuum])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVV 117
            MAKSKNHT  NQS+KAHRNGIKKPK +   S KGMDPK+LRNQR+A+KHNK +
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKRHRHSSTKGMDPKFLRNQRYARKHNKKI 53
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: PNT16457.1 (hypothetical protein POPTR_010G142000v3 [Populus trichocarpa])

HSP 1 Score: 82.4 bits (202), Expect = 1.100e-12
Identity = 42/64 (65.62%), Postives = 48/64 (75.00%), Query Frame = 0 
Query:   51 LERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            L   EP  L  + MAKSKNHT  NQS KAH+NGIKKPK +   S KGMDPK+LRNQR+A+KHNK
Sbjct:   51 LSAPEPHQLFVSEMAKSKNHTAHNQSHKAHQNGIKKPKRHRHTSTKGMDPKFLRNQRYARKHNK 114
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_004239876.1 (PREDICTED: 60S ribosomal protein L29-2-like [Solanum lycopersicum] >XP_015074678.1 PREDICTED: 60S ribosomal protein L29-2-like [Solanum pennellii])

HSP 1 Score: 82.0 bits (201), Expect = 1.400e-12
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKPK++   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_015167978.1 (PREDICTED: 60S ribosomal protein L29-2-like [Solanum tuberosum])

HSP 1 Score: 82.0 bits (201), Expect = 1.400e-12
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKPK++   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: XP_016573541.1 (PREDICTED: 60S ribosomal protein L29-2-like [Capsicum annuum] >XP_016573542.1 PREDICTED: 60S ribosomal protein L29-2-like [Capsicum annuum])

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQS+KAHRNGIKKPK +   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSYKAHRNGIKKPKRHRHSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: GAV70875.1 (Ribosomal_L29e domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-12
Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNK 115
            MAKSKNHT  NQSFKAHRNGIKKP+ +   S KGMDPK+LRNQR+A+KHNK
Sbjct:    1 MAKSKNHTAHNQSFKAHRNGIKKPRKHRHSSTKGMDPKFLRNQRYARKHNK 51
[Close]
BLAST of NO01G03860 vs. NCBI_GenBank
Match: PTQ36198.1 (hypothetical protein MARPO_0065s0019 [Marchantia polymorpha] >PTQ36199.1 hypothetical protein MARPO_0065s0019 [Marchantia polymorpha])

HSP 1 Score: 81.6 bits (200), Expect = 1.800e-12
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 0 
Query:   64 MAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDPKYLRNQRFAKKHNKVVKVVKA 122
            MAKSKNHT  NQS+KAH+NGIKKPK     S KGMDPK+LRNQR+AKKHNKV    +A
Sbjct:    1 MAKSKNHTAHNQSYKAHKNGIKKPKKQKYASRKGMDPKFLRNQRYAKKHNKVAGAEEA 58
The following BLAST results are available for this feature:
BLAST of NO01G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29317.13.300e-2286.15ribosomal protein l29 [Nannochloropsis gaditana][more]
XP_007509507.19.500e-1478.85PREDICTED: 60S ribosomal protein L29-like [Bathyco... [more]
AAX48863.16.200e-1378.43L29 [Suberites domuncula][more]
XP_016552100.11.100e-1273.58PREDICTED: 60S ribosomal protein L29-1-like [Capsi... [more]
PNT16457.11.100e-1265.63hypothetical protein POPTR_010G142000v3 [Populus t... [more]
XP_004239876.11.400e-1276.47PREDICTED: 60S ribosomal protein L29-2-like [Solan... [more]
XP_015167978.11.400e-1276.47PREDICTED: 60S ribosomal protein L29-2-like [Solan... [more]
XP_016573541.11.800e-1276.47PREDICTED: 60S ribosomal protein L29-2-like [Capsi... [more]
GAV70875.11.800e-1276.47Ribosomal_L29e domain-containing protein [Cephalot... [more]
PTQ36198.11.800e-1270.69hypothetical protein MARPO_0065s0019 [Marchantia p... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007911NSK007911Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03860.1NO01G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100136g12gene1308Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03860.1NO01G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03860 ID=NO01G03860|Name=NO01G03860|organism=Nannochloropsis oceanica|type=gene|length=1171bp
ATGGGAGGACACATGGGATGTGCCATTCTGATGACGGTCCCGCGAGCACC
CTCTGTGTTTTCGGGCGCCATTACAGCCCTGCGGCCGTACCGCTCGCCGC
CTCCACACAGCCTCACTCACATGCCGTCTTCATGCCCATGCGCTCTCCAC
TTGgtatgcttgctttagaggattattgggcaagaatgagtgacgttgtt
gggtggccagcaaacgcttccgcaacgcgcttacgattggtggtggtggg
cttgcctccctcctgtctgctttctttgcttccttatgcgtgcagtcatt
atctcacccctattttctcatgaccatcacagGAAAGAAGAGAGCCTCCT
CTCCTTACAACAGCAGCCATGGCCAAGgtacgtttcgtggaggacgcgga
ggagtaaaggtttcgaaaggggatggagggagggagagatggcatcgagg
agggggacgatgagcagataaagcgaattggagcatgcttacgggatgta
gtggatgccggaggcagaggaagagtgttaggccatgctatgggtttgcg
gaaatgtgcccgacaaccgtgggcgggagctggaggccgaggttcctctc
gcgtgatgcttgcatcgatcgagcggccccctctaacccttaatttgcct
tttcctctccgtccccccttcctaatcccatcgcagTCCAAGAACCACAC
GAACCGAAACCAGTCTTTTAAGGCGCACCGAAACGGCATCAAGAAGCCCA
AGAACTACGTCTCCAAGTCCCTCAAGGGGgtaagtgtcgtcggaatgatt
tctattttattattatttttattttccatacatactagtgcgtggattgt
ggtgcaaatttgcttggattgagagtcatagcatacttctgtctttattt
tatccggtggctttggcaagctatgttaattaattcacttttgactgatc
acttcatgtgctgtttttcgtaatcgtgtatgctgtaatgcttctactct
tctcttctcctgcctctccccctaaactctccctccctccctccttcctt
ccctccctccctccctccttccctcccctcaccttcacatttccagATGG
ACCCCAAGTACTTGCGCAACCAGCGTTTCGCGAAGAAACACAACAAGGTC
GTCAAGGTAGTGAAGGCATAA
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protein sequence of NO01G03860.1

>NO01G03860.1-protein ID=NO01G03860.1-protein|Name=NO01G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MGGHMGCAILMTVPRAPSVFSGAITALRPYRSPPPHSLTHMPSSCPCALH
LERREPPLLTTAAMAKSKNHTNRNQSFKAHRNGIKKPKNYVSKSLKGMDP
KYLRNQRFAKKHNKVVKVVKA*
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Synonyms
Publications