NO01G03840, NO01G03840 (gene) Nannochloropsis oceanica

Overview
NameNO01G03840
Unique NameNO01G03840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1443
Alignment locationchr1:1029733..1031175 +

Link to JBrowse

Properties
Property NameValue
Description40s ribosomal protein s14
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1029733..1031175 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0005198structural molecule activity
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001971Ribosomal_S11
Homology
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: EWM29329.1 (40s ribosomal protein s14 [Nannochloropsis gaditana])

HSP 1 Score: 288.1 bits (736), Expect = 2.100e-74
Identity = 144/152 (94.74%), Postives = 149/152 (98.03%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KRG A K++D+TTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVA KCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTP+PTDSTRRKSGRRGRRL
Sbjct:    1 MSKRGSAAKVEDTTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPIPTDSTRRKSGRRGRRL 152
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: NP_001229580.1 (ribosomal protein S14 [Strongylocentrotus purpuratus] >XP_011662799.1 PREDICTED: ribosomal protein S14 isoform X1 [Strongylocentrotus purpuratus])

HSP 1 Score: 248.4 bits (633), Expect = 1.800e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  +  +   +NLGP+  EGE+VFGVAHIFASFNDTFVHVTDLSGRET++RVTGGMKVKADRDEASPYAAMLAAQDVA+KCK+LGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKVQKPE-VQVNLGPQVPEGENVFGVAHIFASFNDTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAIKCKDLGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAY35125.1 (hypothetical protein CUMW_014460 [Citrus unshiu])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0 
Query:   32 TNPQVFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            TNP +   S   + M++R      +++ T  LGP   +GEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:  512 TNPSLLNPSRVFAGMSRRKNREPKEENVT--LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 675
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: GAY35126.1 (hypothetical protein CUMW_014450 [Citrus unshiu])

HSP 1 Score: 248.1 bits (632), Expect = 2.400e-62
Identity = 124/166 (74.70%), Postives = 142/166 (85.54%), Query Frame = 0 
Query:   32 TNPQVFRLSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            TNP +   S   + M++R      +++ T  LGP   +GEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDV+ +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:   34 TNPSLLNPSRVFAGMSRRKNREPKEENVT--LGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 197
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_002732381.1 (PREDICTED: 40S ribosomal protein S14-like [Saccoglossus kowalevskii])

HSP 1 Score: 247.7 bits (631), Expect = 3.100e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  K ++   + LGP+A EGE+VFGVAHIFASFNDTFVHVTDLSG+ET++RVTGGMKVKADRDEASPYAAMLAAQDVA KCKE+GITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKEKKEEQ-QIALGPQAVEGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDEASPYAAMLAAQDVATKCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_022101957.1 (40S ribosomal protein S14a [Acanthaster planci] >XP_022102036.1 40S ribosomal protein S14a [Acanthaster planci])

HSP 1 Score: 247.7 bits (631), Expect = 3.100e-62
Identity = 124/152 (81.58%), Postives = 139/152 (91.45%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G  + ++   ++LGP+  EGE+VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    1 MAPRKGKVQKEE-VQVHLGPQVPEGENVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 151
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_002957120.1 (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >EFJ41774.1 component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 123/148 (83.11%), Postives = 136/148 (91.89%), Query Frame = 0 
Query:   52 ATKLDDS--TTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            + K DD+    ++LGP   EGEHVFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDE+SPYAAMLAAQDVA KCKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALAR+G+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    6 SAKADDAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 153
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_020247312.1 (40S ribosomal protein S14-3-like [Asparagus officinalis] >ONK57133.1 uncharacterized protein A4U43_C10F16950 [Asparagus officinalis])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 124/152 (81.58%), Postives = 136/152 (89.47%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            M+KR      +D+ T  LGP   EGEHVFGVAHIFASFNDTF+HVTDLSGRETL R+TGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+PTDSTRRK GRRGRRL
Sbjct:    1 MSKRKNREPKEDNVT--LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: OWK59531.1 (40S ribosomal protein S14 [Lonchura striata domestica])

HSP 1 Score: 247.3 bits (630), Expect = 4.000e-62
Identity = 124/159 (77.99%), Postives = 142/159 (89.31%), Query Frame = 0 
Query:   39 LSHSSSKMAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            L H  S+MA R G  K ++   ++LGP+ AEGE+VFGV HIFASFNDTFVHVTDLSG+ET+ RVTGGMKVKADRDE+SPYAAMLAAQDVA +CKELGITA+HIK+RATGGN+TK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:    5 LFHFCSEMAPRKGKEKKEEQ-VISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 162
[Close]
BLAST of NO01G03840 vs. NCBI_GenBank
Match: XP_020905516.1 (40S ribosomal protein S14 [Exaiptasia pallida] >KXJ11429.1 40S ribosomal protein S14 [Exaiptasia pallida])

HSP 1 Score: 246.9 bits (629), Expect = 5.200e-62
Identity = 123/152 (80.92%), Postives = 135/152 (88.82%), Query Frame = 0 
Query:   46 MAKRGGATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLSRVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNKTKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL 198
            MA R G         ++LGP+  EGE VFGVAHIFASFNDTFVHVTDLSGRET+SRVTGGMKVKADRDEASPYAAMLAAQDVA +CKE+GITA+HIK+RATGGNKTK+PGPGAQ ALRALARSG+KIGRIEDVTP+P+DSTRRK GRRGRRL
Sbjct:   30 MAPRKGQKTQKQEENISLGPQVGEGELVFGVAHIFASFNDTFVHVTDLSGRETVSRVTGGMKVKADRDEASPYAAMLAAQDVAARCKEIGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 181
The following BLAST results are available for this feature:
BLAST of NO01G03840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29329.12.100e-7494.7440s ribosomal protein s14 [Nannochloropsis gaditan... [more]
NP_001229580.11.800e-6281.58ribosomal protein S14 [Strongylocentrotus purpurat... [more]
GAY35125.12.400e-6274.70hypothetical protein CUMW_014460 [Citrus unshiu][more]
GAY35126.12.400e-6274.70hypothetical protein CUMW_014450 [Citrus unshiu][more]
XP_002732381.13.100e-6281.58PREDICTED: 40S ribosomal protein S14-like [Saccogl... [more]
XP_022101957.13.100e-6281.5840S ribosomal protein S14a [Acanthaster planci] >X... [more]
XP_002957120.14.000e-6283.11component of cytosolic 80S ribosome and 40S small ... [more]
XP_020247312.14.000e-6281.5840S ribosomal protein S14-3-like [Asparagus offici... [more]
OWK59531.14.000e-6277.9940S ribosomal protein S14 [Lonchura striata domest... [more]
XP_020905516.15.200e-6280.9240S ribosomal protein S14 [Exaiptasia pallida] >KX... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007913NSK007913Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577208gene_394Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g14gene1310Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03840.1NO01G03840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03840 ID=NO01G03840|Name=NO01G03840|organism=Nannochloropsis oceanica|type=gene|length=1443bp
AGCCGCTCCTCTCGCCCTCACGTCTTCTGCTCCCTTTCTTCCGCCGCCTG
GCTTTTCACGCATTCCAAACCAAGGCTCAGACAACCCTTGACCCTTAACG
TGATAACTGTTTCCAACATGAGGTCCTCGAGCAGAGATGGAGGCGAATGG
TTATTGTGCCTTAGCTCCTCTCCCATGCACCATCAGCCGCCTCCCTCACC
TCTCTACTTCGCCCCTCAATCATCACCCTACCAACCCACAGGTCTTTCGC
CTTTCCCACTCTTCATCAAAGATGgtaagtccacgcgttatggcgaagat
tggacgttgacagatgtgtattgggattgcgaatgtggttttcggtttgt
atcgcaatggtggacatgctcctttccactcgtcacgggaagaagcatca
cccttgtcgtggccttacacggctagcagccaaggaggactacagccctt
gtgtacatttatgagaaaaatgatgagtgtaacgagacacgtatgctttc
catgtccctccgacaaagcacagacacagagcaagtcctcatcatcttcc
ctcccacgtgcttccttcctttttacccacccacctaaatagGCAAAGCG
AGGAGGTGCAACCAAGCTGGACGACTCCACAACCCTGAACCTGGGCCCCA
AGGCCGCGGAAGGGGAGCACGTCTTCGGTGTCGCTCACATATTCGCTTCC
TTCAACGACACCTTCGTGCATGTCACTGATTTGTCTGGACGAGAGACCCT
GTCACGTGTCACGGGAGGGATGAAGGTCAAGGCCGATCGTGACGAGGCGT
CCCCGTACGCGGCCATGCTTGCCGCACAGGACGTGGCCGTCAAGTGCAAG
GAGCTGGGCATCACGGCCGTGCACATCAAGATGCGTGCGACGGGCGGGAA
CAAGACCAAGTCCCCGGGGCCGGGAGCGCAACATGCTTTGCGTGCGTTGG
CACGTTCGGGCTTGAAGATTGGGCGTATTGAGGATGTGACTCCTGTCCCC
ACGGATAGCACCCGCCGAAAGAGTGGTCGCCGTGGTCGTCGTTTGTAAAC
AAAGGAAGCAGAGAGTCGAAAGGGGGGACGGAGTGTGGGAGGGAAGGAGG
GTAGTAGGATGGAAAATTATGTTTATGCGATGCGGGGCGGGAGTTGCTTT
GTCTCCTTTTGTTTGTGAGCATTTAAACAAACAGAAAAGAGGCGGGACAA
GTCGCCCTTCCGCGACGAGGACGGTGAAGCGAGGAGGGGTATCAAGAGAG
GGCGCACCCACGCTCTTCTTTCCTTAACTCCTTCCCCTGGCCTTTTCACC
TTCTCTTTTCGGGATCGGGGTTTTCCTTGTTCTGGATTTCTTGTCTTGAA
GACATTTCTGGGTGGGATTTATCGGAGGTTGAAGGAGATAAGAAGATTCA
GAGGATAAAAGAAGGAATGAGGGGCTTCGCGGCCCGGAAAGGA
back to top

protein sequence of NO01G03840.1

>NO01G03840.1-protein ID=NO01G03840.1-protein|Name=NO01G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MEANGYCALAPLPCTISRLPHLSTSPLNHHPTNPQVFRLSHSSSKMAKRG
GATKLDDSTTLNLGPKAAEGEHVFGVAHIFASFNDTFVHVTDLSGRETLS
RVTGGMKVKADRDEASPYAAMLAAQDVAVKCKELGITAVHIKMRATGGNK
TKSPGPGAQHALRALARSGLKIGRIEDVTPVPTDSTRRKSGRRGRRL*
back to top
Synonyms
Publications