NO01G03820, NO01G03820 (gene) Nannochloropsis oceanica

Overview
NameNO01G03820
Unique NameNO01G03820
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2902
Alignment locationchr1:1025210..1028111 -

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Properties
Property NameValue
DescriptionCrossover junction endonuclease
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1025210..1028111 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0004519endonuclease activity
GO:0004518nuclease activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011335Restrct_endonuc-II-like
IPR027421DNA_pol_X_lyase_dom
IPR006166ERCC4_domain
Vocabulary: Biological Process
TermDefinition
GO:0090305nucleic acid phosphodiester bond hydrolysis
Homology
BLAST of NO01G03820 vs. NCBI_GenBank
Match: EXX52167.1 (Mus81p [Rhizophagus irregularis DAOM 197198w] >GBC51639.1 Crossover junction endonuclease MUS81 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 92.8 bits (229), Expect = 5.400e-15
Identity = 84/328 (25.61%), Postives = 151/328 (46.04%), Query Frame = 0
Query:  530 WEVVLLLDRRE---HDKNPSIERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVR--PPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAG---QRQSLGRVAALNIYKMY 850
            +EV+L+LD RE         I+  L Q G++  +R L+LGD++WV                                                +VL Y+ ERK + DL +SIKDGR++EQK R+   G  + +  YL+E     L ++      A+++AM +TQ+++G  + RT ++DQ+I  L+RM   +    K + N     I  G       ++ ++++L  +    +  +S   Y +   K+   L+++  F+  L  I  +S  K+  IV +YPTPH L  A   +  +E    +  + V G   +R+++G   +  +Y+++
Sbjct:  319 FEVILILDNREVKLKKDRDYIQDTLQQKGLKISVRNLELGDVIWV-------------------------------------ARKYNSFTQEEIVLDYIIERKRMDDLVSSIKDGRFREQKFRLSRSG--IGQIIYLIED--YNLKEVAEFGIDAIKSAMTSTQVLNGFFLKRTGAIDQSIDYLVRMTNML---KKLYENKTIYSIPDGAIYRANFLD-LKQNLATIYTNRTFHVSFASYSDLNSKSK-SLTLKDTFIKFLMTIRGLSAEKAAEIVKIYPTPHHLFDAFDFLDNEEEKKKML-MNVGGNMIRRKNIGSALSEKVYQIW 599          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: PKC03593.1 (hypothetical protein RhiirA5_363089 [Rhizophagus irregularis] >PKK61362.1 hypothetical protein RhiirC2_760766 [Rhizophagus irregularis] >POG55179.1 hypothetical protein GLOIN_2v1739788 [Rhizophagus irregularis DAOM 181602=DAOM 197198] >POG55181.1 hypothetical protein GLOIN_2v1739767 [Rhizophagus irregularis DAOM 181602=DAOM 197198] >POG81943.1 hypothetical protein GLOIN_2v1503856 [Rhizophagus irregularis DAOM 181602=DAOM 197198])

HSP 1 Score: 92.8 bits (229), Expect = 5.400e-15
Identity = 84/328 (25.61%), Postives = 151/328 (46.04%), Query Frame = 0
Query:  530 WEVVLLLDRRE---HDKNPSIERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVR--PPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAG---QRQSLGRVAALNIYKMY 850
            +EV+L+LD RE         I+  L Q G++  +R L+LGD++WV                                                +VL Y+ ERK + DL +SIKDGR++EQK R+   G  + +  YL+E     L ++      A+++AM +TQ+++G  + RT ++DQ+I  L+RM   +    K + N     I  G       ++ ++++L  +    +  +S   Y +   K+   L+++  F+  L  I  +S  K+  IV +YPTPH L  A   +  +E    +  + V G   +R+++G   +  +Y+++
Sbjct:  297 FEVILILDNREVKLKKDRDYIQDTLQQKGLKISVRNLELGDVIWV-------------------------------------ARKYNSFTQEEIVLDYIIERKRMDDLVSSIKDGRFREQKFRLSRSG--IGQIIYLIED--YNLKEVAEFGIDAIKSAMTSTQVLNGFFLKRTGAIDQSIDYLVRMTNML---KKLYENKTIYSIPDGAIYRANFLD-LKQNLATIYTNRTFHVSFASYSDLNSKSK-SLTLKDTFIKFLMTIRGLSAEKAAEIVKIYPTPHHLFDAFDFLDNEEEKKKML-MNVGGNMIRRKNIGSALSEKVYQIW 577          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: XP_008608829.1 (hypothetical protein, variant [Saprolegnia diclina VS20] >EQC37896.1 hypothetical protein, variant [Saprolegnia diclina VS20])

HSP 1 Score: 92.4 bits (228), Expect = 7.100e-15
Identity = 70/201 (34.83%), Postives = 93/201 (46.27%), Query Frame = 0
Query:  528 EEWEVVLLLDRRE--HDKNPSI-ERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNV 726
            +EWEVVLLLD RE     NPS+ ER L++AGV CE+R L LGDM+W+                                                 VL  + ERK V DLA SI D RY EQK R+   G  +    YL+EG+   +  IV   AL TA+  TQ+++   V    S D+T++ L  +H   V+E+ T   V
Sbjct:  274 DEWEVVLLLDHREMVSRSNPSVFERKLLEAGVTCEVRGLHLGDMIWI--------------------------------ARRHRPTFGGRPITEEFVLDVVVERKAVTDLAMSIIDKRYTEQKQRLADTG--LRYVVYLLEGSL-AVETIVSATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRELSTVYKV 439          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: PSN46179.1 (Crossover junction endonuclease MUS81 [Blattella germanica])

HSP 1 Score: 92.4 bits (228), Expect = 7.100e-15
Identity = 83/328 (25.30%), Postives = 136/328 (41.46%), Query Frame = 0
Query:  530 WEVVLLLDRREHDKNP--------SIERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIYKMY 850
            ++++LL+D++E    P        +I R L   G + ELR L++GD  W+                                                +VL ++ ERK + DLA SI+DGRY EQK R+   G  +    YLVE   +  +  +  P+L  A   TQI+    V +T ++ +T+  L  M   +++       V C              E      C +      ++   E+     K    L  Q+MF+ QL  +N +S AK++AIV+ YPTP  L  A +E+        LA +     ++ +G V + +IY++Y
Sbjct:  239 FDIILLVDKQETVGGPLPKLVQEDAIVRELTVTGTQFELRHLKVGDYTWI---------------------------------------CRDRRTNKEMVLPFIVERKRMDDLAKSIRDGRYHEQKFRLKQCG--IQNLIYLVESHGDNTHTTLPLPSLEQAAVNTQIVDRFSVKKTSNVHETVLYLATMTRLLIKFYSKKTIVKC--------------ERENLPPCLITDDLMSLMMFAEFNNSSSKRK-VLGTQSMFIKQLVQLNGMSVAKAQAIVNSYPTPRVLMAAYQEVGA-AGEKLLATIRYGPMKRMIGPVISKSIYQLY 509          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: XP_012213415.1 (hypothetical protein SPRG_18588 [Saprolegnia parasitica CBS 223.65] >KDO15876.1 hypothetical protein SPRG_18588 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-14
Identity = 89/323 (27.55%), Postives = 139/323 (43.03%), Query Frame = 0
Query:  528 EEWEVVLLLDRRE--HDKNPSI-ERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIYK 848
            +EWE+VLLLD RE     N S+ ER L++AGV CE+R L LGDMMW+                                                 VL  + ERK V DLA SI D RY EQK R+   G  +    YL+EG+   +  I+   AL TA+  TQ+++   V    S D+T++ L  +H   V+       V  R          GR+    +      L P+   S GE+ E  +K A   + + ++ + L  +  +S  +++ + + +PT  +L +        E   A  +LP   +  ++GR    N+++
Sbjct:   83 DEWEIVLLLDHREMVSRSNKSVFERKLLEAGVTCEVRGLHLGDMMWI--------------------------------ARRHRPTFGGRAIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAG--LRYVVYLLEGSL-AVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKV--RNAAPPTAASIGRLPACLRDF--TQLIPTTWQSFGEFNETFRKKAAPTTGE-LYQMMLMQVPGISATRARDLGAAHPTFLSLWQ--------ETQKAAPQLP--SRVNAVGRAVVTNLFR 355          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: XP_012202810.1 (hypothetical protein SPRG_08175 [Saprolegnia parasitica CBS 223.65] >KDO26372.1 hypothetical protein SPRG_08175 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 90.1 bits (222), Expect = 3.500e-14
Identity = 88/323 (27.24%), Postives = 136/323 (42.11%), Query Frame = 0
Query:  528 EEWEVVLLLDRREHDKNPS---IERGLIQAGVRCELRVLQLGDMMWVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIYK 848
            +EWE+VLLLD RE     S    ER L++AGV CE+R L LGDMMW+                                                 VL  + ERK V DLA SI D RY EQK R+   G  +    YL+EG+   +  I+   AL TA+  TQ+++   V    S D+T++ L  +H   V+       V  R          GR     +      L P+   S GE+ E  +K A   + + ++ + L  +  +S  +++ + + +PT  +L +        E   A  +LP   +  ++GR    N+++
Sbjct:  274 DEWEIVLLLDHREMVSRSSKSVFERKLLEAGVTCEVRGLHLGDMMWI--------------------------------ARRHRPTFGGRPIEEEFVLDVIVERKAVSDLALSIIDKRYTEQKQRLADAG--LRYVVYLLEGSL-AVETILGATALATALTRTQVLNNYLVHHAASPDETVAFLSALHWHTVRAFSAVYKV--RNAAPPVAASIGRPPACLRDF--TQLIPTTWQSFGEFNETFRKKAAPTTGE-LYQMMLMQVPGISATRARDLGAAHPTFLSLWQ--------ETQKAAPQLP--SRVNAVGRAVVTNLFR 546          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: SBS88773.1 (crossover junction endonuclease MUS81, putative [Plasmodium malariae])

HSP 1 Score: 89.4 bits (220), Expect = 6.000e-14
Identity = 66/224 (29.46%), Postives = 113/224 (50.45%), Query Frame = 0
Query:  621 VLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVE---GTFEQLNDIVRPP--ALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGR 840
            VL+++ ERKT+ DL+ASI DGRY EQK R++   +E+    YL+E    +F+   +  + P   L  A  +TQ+++G  +L + ++  T  LL  MH +I+Q +K + ++             G  EY+  H   L L      SL ++     K + +  V+ +F  QL  IN      ++ I+S++PTP  L +A+ + + D  +A   K      R  +G+
Sbjct: 1145 VLKWIVERKTLNDLSASIVDGRYDEQKYRLMR-SREIYHIIYLIENSNNSFKNYMNSTKVPYEMLTNAQHSTQLVNGFSILNSENMKHTFFLLCEMHIQIIQNIKEYCHI-------------GENEYI-LHSDKLSLYLKNNASLWDHWNNESKKSKNNIVKEVFGKQLRLINMCGSEATELILSLWPTPFKLYEALNKYTYDGILAEKIKRIYLKNRDIIGK 1353          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: SCO94079.1 (crossover junction endonuclease MUS81, putative [Plasmodium malariae])

HSP 1 Score: 89.4 bits (220), Expect = 6.000e-14
Identity = 66/224 (29.46%), Postives = 113/224 (50.45%), Query Frame = 0
Query:  621 VLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVE---GTFEQLNDIVRPP--ALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGR 840
            VL+++ ERKT+ DL+ASI DGRY EQK R++   +E+    YL+E    +F+   +  + P   L  A  +TQ+++G  +L + ++  T  LL  MH +I+Q +K + ++             G  EY+  H   L L      SL ++     K + +  V+ +F  QL  IN      ++ I+S++PTP  L +A+ + + D  +A   K      R  +G+
Sbjct: 1145 VLKWIVERKTLNDLSASIVDGRYDEQKYRLMR-SREIYHIIYLIENSNNSFKNYMNSTKVPYEMLTNAQHSTQLVNGFSILNSENMKHTFFLLCEMHIQIIQNIKEYCHI-------------GENEYI-LHSDKLSLYLKNNASLWDHWNNESKKSKNNIVKEVFGKQLRLINMCGSEATELILSLWPTPFKLYEALNKYTYDGILAEKIKRIYLKNRDIIGK 1353          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: OEU14539.1 (hypothetical protein FRACYDRAFT_241086 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 89.4 bits (220), Expect = 6.000e-14
Identity = 122/336 (36.31%), Postives = 184/336 (54.76%), Query Frame = 0
Query:  530 WEVVLLLDRREHDKNPSIERGLIQAGVRCELRVLQLGDMMWV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRIVQEM------KTFLN-VACRGIGGGGGEEGGRVEYMEKHLCAL-----PLPP---SRIISLGEYQERCK--KTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIY 847
            W+++LL+D REH K+  +     Q G+ CE R L +GDM W+        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +++  + ERK V DLA+S+   RY EQ+ R+   G  + +  +LVEG     ++      L+ AM  T++  G  +++T  L  T+S+L  +H+RIVQ        KT  N +A    GGG   + GR +     L  +     P+PP    R I+  E + + +  +  G  S++ + L  L  I  +S  K  A+ + YPT ++L  ++   ++ +    +  + +   R ++G  +A  +Y
Sbjct:  221 WKIILLIDGREH-KSKQVVSSCKQVGIPCEERHLAIGDMAWIARCVLPKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIIEILVGTIIERKDVADLASSLYGTRYAEQRLRLSQCG--LPQVLFLVEGDLHSCSN-CPAETLQMAMMETRVNLGFQIVQTKHLTDTVSVLKTLHSRIVQRTFPEAFGKTSKNSMALPTFGGGNRRDRGRGDRRASSLLEMSFDTPPVPPFGTKRFITYPELKAKVEIDRERGTRSIRAITLAMLKQIPTLSHKKCTAMSNAYPTMNSLLDSLSYHNDGDPKTLIRNIEIENGR-TIGPNSASEVY 551          
BLAST of NO01G03820 vs. NCBI_GenBank
Match: XP_022828309.1 (crossover junction endonuclease MUS81 [Spodoptera litura])

HSP 1 Score: 89.4 bits (220), Expect = 6.000e-14
Identity = 72/232 (31.03%), Postives = 115/232 (49.57%), Query Frame = 0
Query:  620 VVLRYMCERKTVGDLAASIKDGRYKEQKGRMLGVGKEVDRSFYLVEGTFEQLNDIVRP-PALRTAMATTQIIHGLPVLRTPSLDQTISLLLRMHTRI-VQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCALPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIVSVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIYKMY 850
            +VL Y+ ERK + DLAASIKDGR+ EQK R+   G  +    YLVE  +++   +  P P+L  A+  T++  G  V  T SL+Q++  L  M  R+ ++  K  L          GGEE    + M+       +P +  +   EY  +       L+V+  F+  L  +  VS  K+ AI + YPTPH+L  A  +  + E    LA L    Q +++G   + ++Y ++
Sbjct:  388 LVLPYVVERKRMDDLAASIKDGRFHEQKFRLRRCG--LKNVIYLVE-KYDKNKGLGLPLPSLLQALTNTRVQDGFKVRSTNSLNQSVRFLAMMTKRLTIRYGKMTLR--------NGGEECDDSDDMK-----FIIPQAVKLMTFEYFNKSSAKTKPLTVKDTFIKLLLQLKGVSVEKALAITNRYPTPHSLIVAYYKCDQQEGEILLASLKYGDQTRNIGPALSKSVYHLF 603          
The following BLAST results are available for this feature:
BLAST of NO01G03820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EXX52167.15.400e-1525.61Mus81p [Rhizophagus irregularis DAOM 197198w] >GBC... [more]
PKC03593.15.400e-1525.61hypothetical protein RhiirA5_363089 [Rhizophagus i... [more]
XP_008608829.17.100e-1534.83hypothetical protein, variant [Saprolegnia diclina... [more]
PSN46179.17.100e-1525.30Crossover junction endonuclease MUS81 [Blattella g... [more]
XP_012213415.11.200e-1427.55hypothetical protein SPRG_18588 [Saprolegnia paras... [more]
XP_012202810.13.500e-1427.24hypothetical protein SPRG_08175 [Saprolegnia paras... [more]
SBS88773.16.000e-1429.46crossover junction endonuclease MUS81, putative [P... [more]
SCO94079.16.000e-1429.46crossover junction endonuclease MUS81, putative [P... [more]
OEU14539.16.000e-1436.31hypothetical protein FRACYDRAFT_241086 [Fragilario... [more]
XP_022828309.16.000e-1431.03crossover junction endonuclease MUS81 [Spodoptera ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007915NSK007915Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03820.1NO01G03820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577194gene_392Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g17gene1312Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03820.1NO01G03820.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03820 ID=NO01G03820|Name=NO01G03820|organism=Nannochloropsis oceanica|type=gene|length=2902bp
GTTTCGATCGCAGCTGCGTCTTGGTTTTTGGTCTCCCCCCTCTCCCTATT
CGAGGGTTGCCTTGAATTTTTCTCGATGCTCCCTCTATTGCATGTAGAAT
ACTTGGTGTAAGGCTCAGATTTGCGCGCAAAGACTTGCTTTGGGGCTGGA
GTTGTGCCGACGATGGGCCGGCGATGCCTACGCCTTGCGGCAACCGCAAC
GTTCGTCACTGGCTGGTACAACCTTTTCCTTACTTTATCAGGCAAATAAC
CAAAGACCCGGCAATACGGTTCGACGCACACTATCTGCTTTATTCCTTCA
TGCAGCTTGCTTATCTCTTTCTCTCCCACTGTCCTGCCCCTGGCACGTGC
AGGCCACCAAGCAAGAGAATTGGTGATGGCGCGCAACGACTGCTAGACCC
AGCAACGGCCATCCTCGACGCAATGGCAGGGGACGCAGTGTCCGTCAAGG
CATGGAATGCACGGCTGGTGGCTTACATCAATACCTTGGAAAATGAGGCG
ACTCGGCGAGgtatctatgtcttggcgggggctgtgatcaggtagctcct
ttccaaatgtatacaaacaccccttccgcatgttccgtgctccttacctt
ccagGCTCTCAACTCCGCTACGCGTACAAGAATGTCGCCAAGGCCCTTGC
AAATTTTCCGACACGCATTACCACAGCCAAAGAAGCCCAGCAAATCAAAG
GTGTGGGCCCTACAATCGGCAGGCAACTTGAGAACTTCGTCAACAACAAA
CTTCTGCCCGAGCAGCAACCAATACAACAAGACAAAACAGCAGCAGTAGT
AGCAGCAGCAGTAGCAGCGGCAGCAGAAGAAGATGATGAAACTGATAGTG
ACGGGAAAGGGTGCTCAGAAAAAGAGTTAGGGTCACAGGGCAGTCTTAAC
GAGATGATGGAAGACCTTTTAGTGGCCTCGCAGTTAAGCGCCTCTTTTCC
AGACATGGAGGAGACTCATCCGGCCGAGAACAAGGCCAGCAGCACCTTCA
GTACCACGAGCATCATCAGTACCACCAGTGTCAGCAGCGGCAGCAACAGC
AGCAACGGCAACAGCAACAACAGCACCAGCACTAGTATTGATAGTAGCAG
CAGTGGGAGCAGTACAAGAAGGAGGAGGAGGCTGGATGCGGAACTCTCGC
GTGGGGCTGCGCTCAAGGCTGCTTCTCTCTTGGTGGATGACAAGACAATT
TTCCTGTCGAGCGATGACGATGAGAAAGAGGAAGGGGAAGAAGAGGAGCA
GGAAAGAGAGGACAAGGAGAATATATGGGGCCTCGCAACAAGCACTGTGA
ATGAAACGCCTTCGACATGGCAGCAGCAGCAGCAGCAGCAACAGCAACAG
CAGCAAGGTCTGTCGTCTTCGGTGGTAATGGAGATCATTGACTTGAGCGA
GGACGAGGACAATGACAACGAGCAGGAGGAGTATGAGCAGGAAGGCTATC
AGCGTTCTGGCAGGAATGAATGTGGCGATGGTGACAATAACAATTCAGTG
CTGGTGCTGACGAGCGACAGCGAGGAGGAGGAGGGTGACGTGGAAGCGGA
GGAGGGAGCGAAGGACAGAATCAACGACGATCGCAGCACAACCAGACCCC
CTCCTCCACCATCACTGCCTCTTGTCCCTCCCTCTTCCCCCTCCAGGGGC
AAAGGTCGCAAGCGCAAGCTCCTCTCCCCTCCCAAAGCCTACATACAACT
AGAACTTGGTTTCGGTGGGGGAAAAGTCGCAGCCGCTCTAGCCGATGAGG
GGCAGGAAGAGGAGGAAGAGGAAGAGGAGGACCTGGACGGGCCCATGACG
TTAGCGAGGCTGCATCGCTTGTGTAAGCATTTCGAAGGGAGTCAGGTCGA
GGAATGGGAAGTGGTTCTGTTGCTTGATCGAAGGGAGCATGATAAAAATC
CGAGCATCGAGAGGGGGCTGATCCAGGCGGGGGTAAGGTGCGAGCTTCGT
GTGCTGCAGTTGGGTGATATGATGTGGGTGGTACGGAGACGACAAGTGAG
CAGCGGCAGCAGCAGTAGTAGTAGTGGTGGTAGTAGTAGCAGCAGCAGCG
GCGGCAGTGGTGATGGTGGTGGAACCAGAAGTAAGCAGCAGGAGAAGGCA
AAGAAGAAAATGGAGAACCAGGAGGTGGTTCTCCGGTATATGTGCGAACG
CAAGACCGTTGGAGATCTCGCTGCCAGCATTAAAGATGGGAGGTATAAGG
AACAGAAAGGGCGTATGTTGGGGGTTGGAAAGGAAGTAGATCGGTCTTTT
TATCTGGTGGAGGGGACATTTGAGCAGTTGAATGATATTGTTCGTCCGCC
CGCTTTACGGACGGCCATGGCTACGACGCAGATCATACACGGGCTGCCTG
TGTTGAGGACGCCGAGCTTGGATCAGACGATTTCGTTGTTGCTCCGGATG
CATACTAGGATTGTGCAGGAGATGAAGACATTCTTGAACGTGGCTTGTAG
AGGAATAGGCGGAGGGGGAGGGGAAGAGGGAGGGCGAGTGGAATATATGG
AGAAGCATTTATGTGCCTTGCCGTTGCCGCCTTCGAGGATAATTTCCTTA
GGGGAGTACCAGGAGAGGTGTAAGAAGACGGCAGGGGACTTGAGCGTGCA
AACCATGTTTTTGGTTCAATTATGTGCCATAAATAAGGTTAGTGAGGCGA
AGAGTAAGGCTATCGTGAGTGTTTATCCAACCCCGCATGCATTGGCTAAG
GCGATGAGAGAGATGAGTGAAGACGAGGCGGTTGCGGCGTTGGCCAAGTT
ACCCGTGGCGGGACAAAGGCAGTCGCTGGGGAGGGTGGCGGCTTTGAATA
TATATAAGATGTATCGGTAGTGGGGGATTAGATTGTGGATGGACGAAGAT
GGGTGGTAAAAAGGGGTGGCAGATATGAAGCACGGCAACATAAGTCTTGC
AT
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protein sequence of NO01G03820.1

>NO01G03820.1-protein ID=NO01G03820.1-protein|Name=NO01G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=851bp
MPTPCGNRNVRHWLVQPFPYFIRQITKDPAIRFDAHYLLYSFMQLAYLFL
SHCPAPGTCRPPSKRIGDGAQRLLDPATAILDAMAGDAVSVKAWNARLVA
YINTLENEATRRGSQLRYAYKNVAKALANFPTRITTAKEAQQIKGVGPTI
GRQLENFVNNKLLPEQQPIQQDKTAAVVAAAVAAAAEEDDETDSDGKGCS
EKELGSQGSLNEMMEDLLVASQLSASFPDMEETHPAENKASSTFSTTSII
STTSVSSGSNSSNGNSNNSTSTSIDSSSSGSSTRRRRRLDAELSRGAALK
AASLLVDDKTIFLSSDDDEKEEGEEEEQEREDKENIWGLATSTVNETPST
WQQQQQQQQQQQQGLSSSVVMEIIDLSEDEDNDNEQEEYEQEGYQRSGRN
ECGDGDNNNSVLVLTSDSEEEEGDVEAEEGAKDRINDDRSTTRPPPPPSL
PLVPPSSPSRGKGRKRKLLSPPKAYIQLELGFGGGKVAAALADEGQEEEE
EEEEDLDGPMTLARLHRLCKHFEGSQVEEWEVVLLLDRREHDKNPSIERG
LIQAGVRCELRVLQLGDMMWVVRRRQVSSGSSSSSSGGSSSSSSGGSGDG
GGTRSKQQEKAKKKMENQEVVLRYMCERKTVGDLAASIKDGRYKEQKGRM
LGVGKEVDRSFYLVEGTFEQLNDIVRPPALRTAMATTQIIHGLPVLRTPS
LDQTISLLLRMHTRIVQEMKTFLNVACRGIGGGGGEEGGRVEYMEKHLCA
LPLPPSRIISLGEYQERCKKTAGDLSVQTMFLVQLCAINKVSEAKSKAIV
SVYPTPHALAKAMREMSEDEAVAALAKLPVAGQRQSLGRVAALNIYKMYR
*
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Synonyms
Publications