NO01G03800, NO01G03800 (gene) Nannochloropsis oceanica

Overview
NameNO01G03800
Unique NameNO01G03800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr1:1021237..1022588 +

Link to JBrowse

Properties
Property NameValue
DescriptionUbiquitin family protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:1021237..1022588 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
[Close]
BLAST of NO01G03800 vs. NCBI_GenBank
Match: EWM29315.1 (ubiquitin family protein [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 8.000e-20
Identity = 52/83 (62.65%), Postives = 64/83 (77.11%), Query Frame = 0 
Query:    1 MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKTRDMSDSASLGQ-QDIKSDSILYMVFRNPGKQRG 83
            MSMYVR+KR  QTIFL  E  ETVQ +K Q+GEI+GQ+  +IRLYG D+TRDM D +SL + QDIK+DSI+Y VFRN G + G
Sbjct:   38 MSMYVRVKRNHQTIFLHVEPNETVQSVKAQVGEILGQSVENIRLYGSDRTRDMPDGSSLAEFQDIKNDSIIYAVFRNEGTKEG 120
[Close]
BLAST of NO01G03800 vs. NCBI_GenBank
Match: GBG31590.1 (Ubiquitin-60S ribosomal protein L40 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 67.0 bits (162), Expect = 3.200e-8
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 0 
Query:    1 MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKTRDMSDSASLGQQDIKSDSILYMVFRNPG 79
            MSMYVR+KR+ QT+FLRAE  +T + +K  +G+I+     DI+LYG DK   + D  +LG  +I +D +++   R  G
Sbjct:    1 MSMYVRVKRQDQTVFLRAEASDTFRTVKVALGDILSLVLDDIKLYGKDKETVLEDEGTLGGFEIGNDDVIFWGQRMDG 78
The following BLAST results are available for this feature:
BLAST of NO01G03800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29315.18.000e-2062.65ubiquitin family protein [Nannochloropsis gaditana... [more]
GBG31590.13.200e-842.31Ubiquitin-60S ribosomal protein L40 [Aurantiochytr... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007918NSK007918Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03800.1NO01G03800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G03800.2NO01G03800.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577190gene_390Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100136g19gene1314Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03800.1NO01G03800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G03800.2NO01G03800.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03800 ID=NO01G03800|Name=NO01G03800|organism=Nannochloropsis oceanica|type=gene|length=1352bp
CAGACAGGCAAGCCTCCCCCTAAGCCTCTCCATCATCTTTCTTTACGTCC
TGCCGTCGCACCATTAGCTATCCTAAAGTCCTGAGCTATCCCTTGTTGAA
AATAAGAAGCCATGTCCATgtacgtaccaggtgtaccccccattgcaata
tctccttgtctcattgcctcgatcccttgcctacttctcccccccattcc
cccaccccgctagGTACGTTAGGATCAAGCGAAAGCAACAAACCATCTTC
CTGCGCGCGGAACAGAGAGAGACCGTGCAAGATATCAAGACACAGATCGG
CGAAATTGTGGGGCAAAACCCGGCGGACATCCGCTTGTATGGACCAGACA
AGgtgcgtcgcgtgttgcttgacgacgaaagggaagggaagtcaagggac
tgctgatagagtgatgcttgatagagtgatgtgatgcttgtgcacgcccg
gatctgaaagaaattgaaatcatgactcatatttttgcgtacatcctttg
aatagcagACAAGGGATATGTCAGACTCGGCCTCCTTAGGGCAGCAGGAC
ATCAAGTCAGATTCCATCTTGTACATGGTCTTCAGGAATCCAGGTAAGCA
ACGTGGAGGTTGAGAAGGCTCGGGCAGATAGTGGGGGGGAGGCTTTAAGG
ATGGAACATATCATAGATAGTGTCGGAGAAGCGTATGGCAATGAAGAGGG
CACGGGTGTCGTACGTGTCCCCGTGCGGCAGTGTACCCCAATGGCATGAA
AGGTGCATACAGACACTCTGAATGTTTTCGTCTAAATCACTTCTACAATC
CAAACCCATTTAAAACCAAACCATAGAGGGGGGCGGTTGGGAGGAAGTGG
ATACGATTACACCAGTGACAGGCGGGGAGATGAAGGACTGAGTGATGGTG
CGAGGTAGCATGTAAAAATAGTGACGAATTTCCACCTCTCGCGGAATACA
AACACGTATATAAATGTGCAAGGTGTTTACTCCATCTAGCGAGGTGACAA
AGCATAGTCGAATTAAAAAAGGCTAGGGGGGGAAAATGGCGTGAGTGGGA
CGGGGTATTGGAAGGTTGAAACTGTCATAAGCAGACGAAAATTCTCGTGG
CACTAAGTGACAAGCTGAGGGCTGGGGCGCATTTAAGTCTTCCAAGCAAA
GTTGCCCAGATGAGGAAGGGCTCTGTAGCTTGCCTTCAGATAAAAAAGGG
GGGCGAAGGGTAAGAAGCGACTCTACGACTGCGACTCTACGACAGGGAGG
TTATTATATATATCTTTCAATTTCAATGCCACCACCACCACGCACAAGCA
TGAAAATATACAATACAGAAATGAATGAGAATAACCATCCGGACCCAAAT
GT
back to top

protein sequence of NO01G03800.1

>NO01G03800.1-protein ID=NO01G03800.1-protein|Name=NO01G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKT
RDMSDSASLGQQDIKSDSILYMVFRNPEGGGWEEVDTITPVTGGEMKD*
back to top

protein sequence of NO01G03800.2

>NO01G03800.2-protein ID=NO01G03800.2-protein|Name=NO01G03800.2|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSMYVRIKRKQQTIFLRAEQRETVQDIKTQIGEIVGQNPADIRLYGPDKT
RDMSDSASLGQQDIKSDSILYMVFRNPGKQRGG*
back to top
Synonyms
Publications