NO01G03740, NO01G03740 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03740 vs. NCBI_GenBank
Match: EWM29312.1 (ring finger protein [Nannochloropsis gaditana]) HSP 1 Score: 405.2 bits (1040), Expect = 3.900e-109 Identity = 247/405 (60.99%), Postives = 297/405 (73.33%), Query Frame = 0 Query: 122 ENRACEDLSDCRSCFRTPGCGFCGGTGQCMPEAHASTCGKGWSNAGVCYTTCPVESVPFHDAAGVIQLGAQAPRPVKYIPGDACTYTIWPLLDTGTTGGNGPTGGNRRTLMIRLQFEYMDLGPGDSLSIFSNGLDGPKILSIGGNGEGVVNRIITSRSSSVVLRLNANGHEGGTGFRVYWRVIENSPLDIYLISAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGRFGLSFGVGARAAGAAGATGRGMARALSAQEKARLPIAPYDPGPGAGXXXXXXXXXXXXXXXXPSSIFQCDMRECCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEGVDGGSGGGMGP----RALIDLLRQRM------LVHVRRNPP 517 ++ C+ +SDC SCF+ GCG+CGGTG+C+ +A A C KGWS+ G+CYT+CP ++ P H+AAGVIQ GA AP V YIPG++CT+TIWPL +G+ G GNRR++MIRLQFEY+DLGPGD+L+I+SNGLDGPKILSI G+G G+VNR ITSRSSSV+LRL+A G GGTGFRVYWRVIE+SPLDIYLISAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ++G GA A+ A ARALS QEKARLPIAPYDPG S+++ + RECCICL+DFERTDLVRKLPCGH++HSECVD WFS NSVCPLCK++V DKL GV G G GM P RA + L+++R+ L+H+ R PP Sbjct: 54 QDAVCDAISDCTSCFQEAGCGYCGGTGRCLAQASADKCSKGWSDTGICYTSCPADAAPLHEAAGVIQFGAMAPEAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVILRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLW-----AWG-GANASAPA-------ARALSPQEKARLPIAPYDPG--------------------ESNLY--NFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKL-------GV-GAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPP 415
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_005854788.1 (atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >XP_005854824.1 atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >EKU21536.1 atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526] >EKU21577.1 atp synthetase alpha chain -like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 288.5 bits (737), Expect = 5.300e-74 Identity = 177/381 (46.46%), Postives = 210/381 (55.12%), Query Frame = 0 Query: 193 APRPVKYIPGDACTYTIWPLLDTGTTGGNGPTGGNRRTLMIRLQFEYMDLGPGDSLSIFSNGLDGPKILSIGGNGEGVVNRIITSRSSSVVLRLNANGHEGGTGFRVYWRVIENSPLDIYLISAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGRFGLSFGVGAR-----------------------------------------------AAGAAGATGRGMARALSAQEKARLPIAPYDPGPGAGXXXXXXXXXXXXXXXXPSSIFQCDMRECCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEGVDGGSGGGMGP----RALIDLLRQRM------LVHVRRNPP 517 AP V YIPG++CT+TIWPL +G+ G GNRR++MIRLQFEY+DLGPGD+L+I+SNGLDGPKILSI G+G G+VNR ITSRSSSVVLRL+A G GGTGFRVYWRVIE+SPLDIYLISAI R S + A G A A+ ARALS QEKARLPIAPYDPG S+++ + RECCICL+DFERTDLVRKLPCGH++HSECVD WFS NSVCPLCK++V DKL GV G G GM P RA + L+++R+ L+H+ R PP Sbjct: 2 APGAVHYIPGESCTFTIWPLPGSGSATSPGAGAGNRRSVMIRLQFEYLDLGPGDTLNIYSNGLDGPKILSIAGSGLGIVNRTITSRSSSVVLRLHAEGPVGGTGFRVYWRVIESSPLDIYLISAIIAKVLNGDLSGVDAPDDHGSRSMIGAMESLGRQDMAKRSSDSTPISTHEHIPTYANATYPVTSILTCILXXXXXXXXXXXXXXXXXXXXXXRLLWAWGGANASAPA-ARALSPQEKARLPIAPYDPG--------------------ESNLY--NFRECCICLTDFERTDLVRKLPCGHVYHSECVDCWFSVNSVCPLCKSDVRDKL-------GV-GAEGAGMVPFWRMRAALHLIQRRLLWPAGHLLHLHRPPP 351
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_019447524.1 (PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Lupinus angustifolius] >XP_019447525.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Lupinus angustifolius] >XP_019447526.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Lupinus angustifolius] >XP_019447527.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Lupinus angustifolius] >OIW09269.1 hypothetical protein TanjilG_01240 [Lupinus angustifolius]) HSP 1 Score: 79.3 bits (194), Expect = 4.800e-11 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEG 486 CCICL+ +E D +R+LPC HLFH EC+D W N++CPLCK+ V++ + + EG Sbjct: 342 CCICLAKYENNDELRELPCSHLFHKECIDKWLKINALCPLCKSEVVENVRRSISREG 398
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_015971963.1 (E3 ubiquitin-protein ligase At1g63170 isoform X1 [Arachis duranensis]) HSP 1 Score: 79.0 bits (193), Expect = 6.300e-11 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEG 486 CCICL+ +E D +R+LPC HLFH ECVD W N++CPLCK+ V + L EG Sbjct: 377 CCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGENLTGSGAAEG 433
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_020981012.1 (E3 ubiquitin-protein ligase At1g12760 isoform X2 [Arachis duranensis]) HSP 1 Score: 79.0 bits (193), Expect = 6.300e-11 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEG 486 CCICL+ +E D +R+LPC HLFH ECVD W N++CPLCK+ V + L EG Sbjct: 335 CCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGENLTGSGAAEG 391
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_010533709.1 (PREDICTED: E3 ubiquitin-protein ligase At1g12760 [Tarenaya hassleriana]) HSP 1 Score: 78.2 bits (191), Expect = 1.100e-10 Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 0 Query: 428 ECCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLN 479 ECCICLS +E D +R+LPCGH FH CVD W NS CPLCK N+L N Sbjct: 344 ECCICLSAYEDGDELRELPCGHHFHCACVDKWLFINSTCPLCKFNILKSSN 394
BLAST of NO01G03740 vs. NCBI_GenBank
Match: OIW03071.1 (hypothetical protein TanjilG_19351 [Lupinus angustifolius]) HSP 1 Score: 78.2 bits (191), Expect = 1.100e-10 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQ 480 CCICL+ +E D +R+LPC HLFH ECVD W N++CPLCK+ V +K + Sbjct: 389 CCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGEKFRR 439
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_019457797.1 (PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius] >XP_019457798.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius] >XP_019457799.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius] >XP_019457800.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius] >XP_019457801.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius] >XP_019457802.1 PREDICTED: E3 ubiquitin-protein ligase At1g63170-like [Lupinus angustifolius]) HSP 1 Score: 78.2 bits (191), Expect = 1.100e-10 Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQ 480 CCICL+ +E D +R+LPC HLFH ECVD W N++CPLCK+ V +K + Sbjct: 343 CCICLAKYENNDELRELPCSHLFHKECVDKWLKINALCPLCKSEVGEKFRR 393
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_013461907.1 (E3 ubiquitin-protein ligase At1g12760 [Medicago truncatula] >KEH35942.1 zinc finger, C3HC4 type (RING finger) protein, putative [Medicago truncatula]) HSP 1 Score: 77.8 bits (190), Expect = 1.400e-10 Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEGVDGGSG 492 CCIC++++E D +R+LPC HLFH ECVD W N++CPLCK+ + + + + + E + G Sbjct: 317 CCICIANYENDDELRELPCSHLFHKECVDKWLKINALCPLCKSEIGENVTEPVIEENANQQRG 379
BLAST of NO01G03740 vs. NCBI_GenBank
Match: XP_016162370.1 (E3 ubiquitin-protein ligase At1g63170 isoform X1 [Arachis ipaensis] >XP_020960803.1 E3 ubiquitin-protein ligase At1g63170 isoform X1 [Arachis ipaensis]) HSP 1 Score: 77.8 bits (190), Expect = 1.400e-10 Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 0 Query: 429 CCICLSDFERTDLVRKLPCGHLFHSECVDSWFSFNSVCPLCKANVLDKLNQYPLPEG 486 CCICL+ +E D +R+LPC HLFH +CVD W N++CPLCK+ V + L EG Sbjct: 377 CCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGENLTGSGAAEG 433 The following BLAST results are available for this feature:
BLAST of NO01G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03740 ID=NO01G03740|Name=NO01G03740|organism=Nannochloropsis oceanica|type=gene|length=4871bpback to top protein sequence of NO01G03740.1 >NO01G03740.1-protein ID=NO01G03740.1-protein|Name=NO01G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bpback to top protein sequence of NO01G03740.2 >NO01G03740.2-protein ID=NO01G03740.2-protein|Name=NO01G03740.2|organism=Nannochloropsis oceanica|type=polypeptide|length=423bpback to top Synonyms
Publications
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