NO01G03640, NO01G03640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03640 vs. NCBI_GenBank
Match: EWM29295.1 (e3 ubiquitin-protein ligase mdm2 [Nannochloropsis gaditana]) HSP 1 Score: 443.4 bits (1139), Expect = 7.000e-121 Identity = 231/362 (63.81%), Postives = 257/362 (70.99%), Query Frame = 0 Query: 1 MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNET-VVELVGLASQEEARAYSAAIIWPTAATPAHGAGMLEGE-SMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 M PPP+TP+STA VA QAAFHYRVVCEDGAYVRAGLELSSRHLYTI SQST+EVLERCVN QGLARLRT DGWISEMLNPLSGQRGPIVE+VPLQHPLKFRI FP GALVRSGIE+S+ VVGTIP GQEI+VT+KR+SDTPS+RCVPRLKLADG GWIS RIN+PPP++ VVEL+GLA E YS HGAGML+GE + Y + + D S+KIR +LQP SG + Q RR++KEDHSCLVCFS+ RN+TFVHGESGHIACCLECARVLKGRGDPCPVCRLP+DSVIQHFWA Sbjct: 1 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSREVDNYSTMF---DGLVSVHGAGMLDGEGDESIHGYQDGGSPLDVTSGERRGSLSMDLSVSEPQPVGKNRHTRYEQQRHQQGQIADMSEKIRYALQPASAGIDEQSGTATSKGDQYERRRTKEDHSCLVCFSACRNATFVHGESGHIACCLECARVLKGRGDPCPVCRLPVDSVIQHFWA 359
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_005856022.1 (hypothetical protein NGA_2113000, partial [Nannochloropsis gaditana CCMP526] >EKU20340.1 hypothetical protein NGA_2113000, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 309.3 bits (791), Expect = 1.600e-80 Identity = 152/184 (82.61%), Postives = 166/184 (90.22%), Query Frame = 0 Query: 1 MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNET-VVELVGLASQEE 184 M PPP+TP+STA VA QAAFHYRVVCEDGAYVRAGLELSSRHLYTI SQST+EVLERCVN QGLARLRT DGWISEMLNPLSGQRGPIVE+VPLQHPLKFRI FP GALVRSGIE+S+ VVGTIP GQEI+VT+KR+SDTPS+RCVPRLKLADG GWIS RIN+PPP++ VVEL+GLA E Sbjct: 11 MLPPPSTPRSTAVVAFTQAAFHYRVVCEDGAYVRAGLELSSRHLYTIGSQSTIEVLERCVNNQGLARLRTRDGWISEMLNPLSGQRGPIVELVPLQHPLKFRITFPDGALVRSGIELSSGVVGTIPAGQEIVVTEKRFSDTPSYRCVPRLKLADGLGWISMRINSPPPSDADVVELLGLACSRE 194
BLAST of NO01G03640 vs. NCBI_GenBank
Match: CBJ33373.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 206.8 bits (525), Expect = 1.100e-49 Identity = 130/344 (37.79%), Postives = 167/344 (48.55%), Query Frame = 0 Query: 17 AQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNETVVELVGLASQEEARAYSAAIIWPTAATPAHGAGMLEGESMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 A A + YRVVC DGA+VR G+EL+S L+ + S VEVLER +N GL RL+ A+GWISE+LNPLSGQRGP+VE+V L PL++R++ P GA+VR +E+++S V TI G+ + V+ K++SD +RCV RLKLADG GA +EG D +D DDD A + + + ED +C+VC S R +T VHGE GHIACCLECAR+LK RGD CPVCR PIDSV+QHFWA Sbjct: 113 AGARWRYRVVCRDGAFVRHGIELTSPFLFNLPWHSVVEVLERRINDAGLPRLKIAEGWISEVLNPLSGQRGPVVEIVKLLQPLQYRVVLPDGAVVRRTVELASSQVKTIAAGELVQVSAKKFSDL-GNRCVQRLKLADG----------------------------------------------GAAAVEG---------------------------------------------------------DTND---------DDDQKA------DLFKIKHSDSLGEDDNCVVCLSGPRTATIVHGEIGHIACCLECARILKARGDACPVCRAPIDSVVQHFWA 337
BLAST of NO01G03640 vs. NCBI_GenBank
Match: GAX11184.1 (E3 ubiquitin-protein ligase Mdm2 [Fistulifera solaris]) HSP 1 Score: 198.4 bits (503), Expect = 3.900e-47 Identity = 121/355 (34.08%), Postives = 170/355 (47.89%), Query Frame = 0 Query: 23 YRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLR----------------TADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNETVVEL-VGLASQEEARAYSAAIIWPTAATPAHGAGMLEGESMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 +RV C DGAYVRAG++LSS HL T+ S + V + VN GL+RL+ T DGW SE LNPLSGQRG I++ +P P +RI A +RSGIE+S+ +G G + VT + +S+ P+ +C+ RL+LA GWIS R+N PPN++++ + GL + P A + E M + + + V A C+ Y + + ++ ++D C++C + RN+T VHG +GHIACCL CAR+LK R DPCPVCRLPID VIQHF+A Sbjct: 292 WRVTCPDGAYVRAGMDLSSTHLGTVPYGSLLMVRRKLVNGMGLSRLQVCAALSKKLGNQILVETIDGWCSEFLNPLSGQRGSILQPLPFPLPALYRIDLRPSATIRSGIELSSPEIGFASYGALVRVTGRAFSEHPAEKCIERLRLAGNGGWISLRLNKHPPNDSLIAVHEGL---------------DPSFDPDQPA-LFHVEEMRKVRRNQDPTVVTNGAFISSTIPMIASVDDEEISAASLTSSSDSTIDEGNGTSRTARSNTGCT---YTKSTALSPSVRPTKQKESSTPVQRKDEFCVICLTEDRNATMVHGSTGHIACCLMCARILKARKDPCPVCRLPIDLVIQHFYA 627
BLAST of NO01G03640 vs. NCBI_GenBank
Match: GAX26974.1 (E3 ubiquitin-protein ligase Mdm2 [Fistulifera solaris]) HSP 1 Score: 197.6 bits (501), Expect = 6.700e-47 Identity = 122/355 (34.37%), Postives = 170/355 (47.89%), Query Frame = 0 Query: 23 YRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLR----------------TADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNETVVEL-VGLASQEEARAYSAAIIWPTAATPAHGAGMLEGESMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 +RV C DGAYVRAG++LSS HL T+ S + V + VN GL+RL+ T DGW SE LNPLSGQRG I++ +P P +RI A +RSGIE+S+ +G G + VT + +S+ P+ +C+ RL+LA GWIS R+N PPN++++ + GL + P A + E M + + + A+ A K C+ Y + + ++D C++C + RN+T VHG +GHIACCL CAR+LK R DPCPVCRLPID VIQHF+A Sbjct: 304 WRVTCPDGAYVRAGMDLSSTHLGTVPYGSLLMVRRKLVNGMGLSRLQVCAALSKKLGNQILVETIDGWCSEFLNPLSGQRGSILQPLPFPLPALYRIDLRPSATIRSGIELSSPEIGFASYGALVRVTGRAFSEHPAEKCIERLRLAGNGGWISLRLNKHPPNDSLIAVHEGL---------------DPSFDPDQPA-LFHVEEMRKVRRNQDPALLTNGAFVSSTIPMIASVDDEEISAASLTSSSDSTIDEGNGTNRTAKSKTGCT---YTKSIALGPSVRLAKQTESSTPVQRKDEFCVICLTEDRNATMVHGSTGHIACCLMCARILKARRDPCPVCRLPIDLVIQHFYA 639
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_002176385.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC42621.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 194.1 bits (492), Expect = 7.400e-46 Identity = 122/373 (32.71%), Postives = 178/373 (47.72%), Query Frame = 0 Query: 16 LAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRT---------------ADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNE-TVVELVGLASQEEARAYSAAIIWPTAATPAHGAGMLEGESMAEE------QYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDD--FSATSGAGDNHP----QQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 L+ + +RV C GA+VR GLELS++H+ T+ S V V + +N GL+RL+ GW SE LNPLSGQRG I + +PL P + ++ GA++R G+E+S+ +G P G + +T + +++ P+ CV RL++A GWIS ++N PPP + +V+L+ L + E P A H + + + + +E Q E A+ I L P + S TS P + RQS + CLVC + +R ST VHGE+GHIACCL CAR+LK +G PCP+CR PI+ V+QHFWA Sbjct: 305 LSDRQWLWRVSCPVGAFVRKGLELSTQHITTVPYGSLVHVKRKAINAMGLSRLQVEVFVPPENESKDPEMVLGWCSEYLNPLSGQRGKIAQPLPLPVPAVYCVMLKEGAIIRDGVELSSQEIGHAPEGSMLSITSRAFAEHPTEDCVERLRIAGNGGWISRKLNNPPPLDLVIVKLIELDGEFE----------PNAPWAFHFSQLRKMQESHQEPTCCGTQVNEFTAL-----------------------------------------------PILSPLNPPERSRKGSLTSSRLKKPPLSTYAKIPNRQSALEDQCLVCLADFRTSTIVHGETGHIACCLVCARILKAQGSPCPICRQPIELVVQHFWA 620
BLAST of NO01G03640 vs. NCBI_GenBank
Match: XP_002296665.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87060.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 142.9 bits (359), Expect = 1.900e-30 Identity = 112/363 (30.85%), Postives = 158/363 (43.53%), Query Frame = 0 Query: 5 PTTPQSTAAVALAQAAFHYRVVCE-DGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLR------------------------TADGWISEMLNPLSGQRGPIVEVVPLQHPLKFRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLADGSGWISARINAPPPNETVVELVGLASQEEARAYSAAIIWPTAATPAHGAGMLEGESMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGD 343 P + A L + + +RV+ E DGA+VR G EL S H+ T+ + V V + VN GL+RLR GWISE LNPLSG RG IVE +P PL ++++ GA++ SG+EIS+ +G P G + V + ++D+ S RC+ +L+LA G GWIS +++ E VVELVG+ E A PA + + MAE R + G + +K + L A+ D H Q + CL+C + RN+T VHGE+GHI CCL CAR+L R D Sbjct: 446 PGSASVVTASVLDDSNWMWRVMYEPDGAFVREGCELGSDHIGTLPYGTIVNVQSKAVNEMGLSRLRIDAYVADAPFDHGRHSNDDAFCMKKVSGWISEFLNPLSGARGNIVEPIPFAVPLLYKVVLDDGAVIFSGVEISSLQIGLAPKGSLLSVVGRAFTDS-SVRCMEKLRLAGGGGWISVQLD-HHGREQVVELVGVDPSFE------------ADDPAAFHFKEQKKVMAELNANSRGS--GGHRVSISTSSSRGARYFYQRQLSEINDDETIEEQSLESDSDEEENKPQSLLAATLYRSGASKLFSDQHQQ----------NRCLICLTDERNATIVHGETGHIVCCLTCARILNARKD 782
BLAST of NO01G03640 vs. NCBI_GenBank
Match: EJK64964.1 (hypothetical protein THAOC_14246, partial [Thalassiosira oceanica]) HSP 1 Score: 105.9 bits (263), Expect = 2.600e-19 Identity = 110/396 (27.78%), Postives = 154/396 (38.89%), Query Frame = 0 Query: 23 YRVVCE-DGAYVRAGLELSSRHLYTIASQSTVEVLERCVNIQGLARLRTADGWI---------------------SEMLNPLSGQRGPIVEVVP-------------LQHPLKFR-ILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRLKLA-DGSGWISARINAPPPNET-VVELVGLASQ------------------EEARAYSAAIIWPTAATPAHGAGMLEGESMAEEQYGERHAVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQSKED--HSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 +RV C DGAYVR GLELSS + + V V + VN GL+RL + + ++ + +P + + G I E P + P++ R +L P R G+E G PVG+ + V + S+ P VPR A G GWIS +N PP++ VVEL+G+ + +E RA A +A G G +A + + +++ AG + E S + + CL+C S R +T VHGE+GHIACCL CAR+LK RGD CPVCRLPID V+Q FWA Sbjct: 161 WRVTCSPDGAYVRDGLELSSSRTCVLPYGTVVGVDGKAVNDMGLSRL-SVEAYVDRGDGDEGDAESSXXXXXXEDEDGTSPYTRRVGYISEPCPSRSRPCTASSTRGRRDPVRRRAVLVPD----RDGVE------GRRPVGRGVGVLGR--SEAP----VPRAAQARGGGGWISRTLNRRPPHDVPVVELLGVDGRFDPDDPSSFHFECMRGVLDELRAGEEADAGCCSAAADGGPG--SDSPLAAAAADRMRRISSYADISEIGDDPAEPCRDDTGCDDADAPRHRPALFRSGSLLPSPAPGPMDAIRESSSSCGKVGDAGASALPSEGYWSSSTNNPNRCLICLSEERTATIVHGETGHIACCLTCARILKARGDACPVCRLPIDLVVQQFWA 537
BLAST of NO01G03640 vs. NCBI_GenBank
Match: EJK69481.1 (hypothetical protein THAOC_09258 [Thalassiosira oceanica]) HSP 1 Score: 99.0 bits (245), Expect = 3.200e-17 Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0 Query: 307 CLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHFWA 361 CL+C S R +T VHGE+GHIACCL CAR+LK RGD CPVCRLPID V+Q FWA Sbjct: 137 CLICLSEERTATIVHGETGHIACCLTCARILKARGDACPVCRLPIDLVVQQFWA 190
BLAST of NO01G03640 vs. NCBI_GenBank
Match: PFX32430.1 (E3 ubiquitin-protein ligase Mdm2 [Stylophora pistillata]) HSP 1 Score: 82.0 bits (201), Expect = 4.100e-12 Identity = 29/56 (51.79%), Postives = 41/56 (73.21%), Query Frame = 0 Query: 303 EDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLPIDSVIQHF 359 ++ C++C +N+T +HG++GH CC CA+VLK RGDPCP+CR PID VI+ F Sbjct: 322 DNSKCIICMDQPKNATVIHGDTGHCCCCWACAQVLKQRGDPCPICRAPIDHVIRQF 377 The following BLAST results are available for this feature:
BLAST of NO01G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03640 ID=NO01G03640|Name=NO01G03640|organism=Nannochloropsis oceanica|type=gene|length=1083bpback to top protein sequence of NO01G03640.1 >NO01G03640.1-protein ID=NO01G03640.1-protein|Name=NO01G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=361bpback to top Synonyms
Publications
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