NO01G03600, NO01G03600 (gene) Nannochloropsis oceanica

Overview
NameNO01G03600
Unique NameNO01G03600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2290
Alignment locationchr1:953688..955977 +

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Properties
Property NameValue
DescriptionMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:953688..955977 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G03600 vs. NCBI_GenBank
Match: ORX92603.1 (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 184.1 bits (466), Expect = 6.400e-43
Identity = 87/151 (57.62%), Postives = 115/151 (76.16%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPD-PTLP 208
            R+PCP+ I++DVGGAF MG++GGGIWH  KG++N+P+GER+ G ++SVKARAP++GG FAVWG  F++FDC+   +R+KEDPWN+ILSG  TGG+LA R G KAA  +A +GG++LAMIEG  IAIT+ FA      E   P MP  P +P
Sbjct:    9 RDPCPWVILNDVGGAFVMGAVGGGIWHSVKGIKNSPRGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGVKAAATSAAVGGVLLAMIEGLGIAITRMFA------EQNRPVMPQVPDIP 153          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: ORX98140.1 (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 184.1 bits (466), Expect = 6.400e-43
Identity = 87/151 (57.62%), Postives = 116/151 (76.82%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPD-PTLP 208
            R+PCP+ I++D+GGAF MG++GGGIWH  KG++N+PKGER+ G ++SVKARAP++GG FAVWG  F++FDC+   +R+KEDPWN+ILSG  TGG+LA R G KAA  +AV+GG++LAMIEG  IA+T+ FA      E   P MP  P +P
Sbjct:    9 RDPCPWVILNDIGGAFVMGAVGGGIWHSVKGIKNSPKGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGFKAAATSAVVGGVLLAMIEGLGIAMTRMFA------EQNRPIMPQVPDIP 153          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: PSC76847.1 (mitochondrial import inner membrane translocase subunit TIM17-2-like [Micractinium conductrix])

HSP 1 Score: 183.0 bits (463), Expect = 1.400e-42
Identity = 81/134 (60.45%), Postives = 107/134 (79.85%), Query Frame = 0
Query:   57 GREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPP 191
            GREPCP RI+DDVGGAF MG++GGG+WH  KG++N+P G R  GGI +++  AP +GG+FAVWG  F++FDC++ A+RKKEDPWN+I +GA TGG L +R G K+AGK+AV GG++LAMIEG  I +T+  APP
Sbjct:   11 GREPCPDRILDDVGGAFGMGAVGGGMWHLLKGMKNSPSGHRFVGGIDAIRREAPRIGGSFAVWGGLFSTFDCTLVALRKKEDPWNSIAAGALTGGFLQLRTGLKSAGKSAVFGGVLLAMIEGVGILLTRVTAPP 144          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: OZJ06953.1 (Mitochondrial import inner membrane translocase subunit tim17, partial [Bifiguratus adelaidae])

HSP 1 Score: 181.0 bits (458), Expect = 5.400e-42
Identity = 88/155 (56.77%), Postives = 116/155 (74.84%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPD-PTLPPTGP 212
            R+PCP+ I++D+GGAF MG++GGGIWH  KG +N+P+GER  G I+++KARAP++GG FAVWG  F++FDC++  +R+KEDPWNAILSGA TGG+LA R G KAAG +A +GG +LA+IEG  IAIT+F A      E   P MP  P + P  P
Sbjct:   10 RDPCPWVILNDLGGAFVMGAVGGGIWHSVKGAKNSPRGERAIGAITAMKARAPVLGGNFAVWGGLFSTFDCTLKGLRQKEDPWNAILSGAATGGVLAARGGVKAAGISAAVGGCLLALIEGVGIAITRFMA------ESNRPVMPQLPEIQPPTP 158          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: ORX48031.1 (mitochondrial import inner membrane translocase, subunit Tim17/22 [Hesseltinella vesiculosa])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 84/145 (57.93%), Postives = 112/145 (77.24%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMP 203
            R+PCP+ I++D+GGAF MG++GGGIWH  KG +N+P+GERL G +S++KARAP++GG FAVWG  F++FDC++  +R+KEDPWN+ILSGA TGG LA R G KAAG +AV+GG +LA+IEG  IAI++       T E   P MP
Sbjct:    9 RDPCPWVILNDLGGAFVMGAVGGGIWHSVKGAKNSPRGERLTGAVSAMKARAPVLGGNFAVWGGMFSTFDCALKGIRQKEDPWNSILSGALTGGCLAARGGAKAAGVSAVVGGGLLALIEGIGIAISRM------TAEQNRPVMP 147          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: PKA60626.1 (Mitochondrial import inner membrane translocase subunit TIM17-2 [Apostasia shenzhenica])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 84/160 (52.50%), Postives = 116/160 (72.50%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMPDPTLPPTGPGMLSGF 218
            REPCP RI+DDVGGAF MG++GG  +H+ KG+ N+P GERL GG+ +V+  AP VGG+FAVWG  F++FDC++  VR+KEDPWN+I++GA TGG L++R GP AAG++A+ GG++LA+IEGA I + + F+ P + P M  P +          G L GF
Sbjct:    8 REPCPDRILDDVGGAFGMGAVGGSAFHFLKGLYNSPNGERLAGGVQAVRMNAPRVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIIAGAATGGFLSMRQGPAAAGRSAIFGGILLALIEGAGIMLNRVFSAPQNLPPMDDPNIAAAAGVGGATGSLPGF 167          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_008876544.1 (hypothetical protein H310_11596 [Aphanomyces invadans] >ETV94953.1 hypothetical protein H310_11596 [Aphanomyces invadans])

HSP 1 Score: 179.1 bits (453), Expect = 2.000e-41
Identity = 86/154 (55.84%), Postives = 114/154 (74.03%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPAS--TPEMGGPAMPDPTLPPT 210
            REPCP+RI++D+G AF MG++GGGI+H  KG RN+P GER+RG + +VKAR+P++ G FA+WG  F+S+DCS+AAVR+KEDPWN+IL+GA TGG LA+R+GP+AA   AVIGG +LA+IEG  I + K   PP    T E G         PP+
Sbjct:    3 REPCPWRILEDMGSAFGMGAVGGGIFHSIKGARNSPPGERIRGAVFAVKARSPMLAGQFAIWGCLFSSYDCSLAAVRQKEDPWNSILAGAATGGTLAMRSGPRAALTQAVIGGTLLALIEGLGILLGKMVTPPPQEFTDEHGIDTSEQQLAPPS 156          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_009830886.1 (hypothetical protein H257_07147 [Aphanomyces astaci] >ETV79950.1 hypothetical protein H257_07147 [Aphanomyces astaci])

HSP 1 Score: 178.7 bits (452), Expect = 2.700e-41
Identity = 85/154 (55.19%), Postives = 114/154 (74.03%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPAS--TPEMGGPAMPDPTLPPT 210
            REPCP+RI++D+G AF MG++GGGI+H  KG RN+P GER+RG + +VKAR+P++ G FA+WG  F+S+DCS+AA+R+KEDPWN+IL+GA TGG LA+R+GP+AA   AVIGG +LA+IEG  I + K   PP    T E G         PP+
Sbjct:    3 REPCPWRILEDMGSAFGMGAVGGGIFHSIKGARNSPPGERVRGAVFAVKARSPMLAGQFAIWGCLFSSYDCSLAAIRQKEDPWNSILAGAATGGTLAMRSGPRAALTQAVIGGTLLALIEGLGILLGKMVTPPPQEFTDEHGVDTSEQQLAPPS 156          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: XP_018292759.1 (NADH dehydrogenase 1 alpha subcomplex subunit 11 NDUFA11 [Phycomyces blakesleeanus NRRL 1555(-)] >OAD74719.1 NADH dehydrogenase 1 alpha subcomplex subunit 11 NDUFA11 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 178.7 bits (452), Expect = 2.700e-41
Identity = 84/145 (57.93%), Postives = 112/145 (77.24%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPAMP 203
            R+PCP+ I++D+GGAF MG++GGGIWH  KG +N+P+GERL G ++++KARAP++GG FAVWG  F++FDC +  +R+KEDPWN+ILSGA TGG+LA R G KAA  +AV+GG +LA+IEG  IAIT+F      T E   P MP
Sbjct:   10 RDPCPWVILNDLGGAFVMGAVGGGIWHSVKGAKNSPRGERLVGAVTAMKARAPVLGGNFAVWGGLFSTFDCGLKGIRQKEDPWNSILSGAFTGGVLAARGGAKAATVSAVVGGSLLAVIEGVGIAITRF------TAESNRPVMP 148          
BLAST of NO01G03600 vs. NCBI_GenBank
Match: GAY02822.1 (Hypothetical protein PINS_010656 [Pythium insidiosum])

HSP 1 Score: 178.7 bits (452), Expect = 2.700e-41
Identity = 84/153 (54.90%), Postives = 110/153 (71.90%), Query Frame = 0
Query:   58 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFA--PPASTPEMGGPAMPDPTLPP 209
            REPCP+RIV+D GG F +G++ G  W+ FKG RN+P G+R RG I + K R P++ G FAVWGL F+SFDCS  A+R+KEDPWN+IL+GA TGG LAIRAGP+AA   A+IGG++LA IEG  I +  +FA  P  +  +MG P + +  L P
Sbjct:  283 REPCPFRIVEDAGGGFMLGAVFGAGWYTFKGARNSPAGQRFRGAIYNAKMRTPVLAGGFAVWGLLFSSFDCSFEALRRKEDPWNSILAGAATGGTLAIRAGPRAAASQALIGGVLLAAIEGVGIMVNDYFASNPMGAPEDMGNPELDEQKLAP 435          
The following BLAST results are available for this feature:
BLAST of NO01G03600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ORX92603.16.400e-4357.62mitochondrial import inner membrane translocase, s... [more]
ORX98140.16.400e-4357.62mitochondrial import inner membrane translocase, s... [more]
PSC76847.11.400e-4260.45mitochondrial import inner membrane translocase su... [more]
OZJ06953.15.400e-4256.77Mitochondrial import inner membrane translocase su... [more]
ORX48031.11.600e-4157.93mitochondrial import inner membrane translocase, s... [more]
PKA60626.11.600e-4152.50Mitochondrial import inner membrane translocase su... [more]
XP_008876544.12.000e-4155.84hypothetical protein H310_11596 [Aphanomyces invad... [more]
XP_009830886.12.700e-4155.19hypothetical protein H257_07147 [Aphanomyces astac... [more]
XP_018292759.12.700e-4157.93NADH dehydrogenase 1 alpha subcomplex subunit 11 N... [more]
GAY02822.12.700e-4154.90Hypothetical protein PINS_010656 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007945NSK007945Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03600.1NO01G03600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577120gene_364Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g41gene1336Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03600.1NO01G03600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03600 ID=NO01G03600|Name=NO01G03600|organism=Nannochloropsis oceanica|type=gene|length=2290bp
GTGAGGTGTGGAGTGGGATGATGAGCATTTGACGACGGTGATGCGAGGGA
GGTGGCTAGCAAGAAATGTTGGGGAAATGATTTCTTCAGACACGTCGCCC
AGCTGCTTTACAGGCATCAGAAGGTAGAAGAGTTGTGAGGCCAGACATGG
TTGTAGAGAAATGATGCTCTAGCTAATTGTGTCCACAATTGCCGAGCCGC
AGAGAACAAGTTCATCGCGACCGCTCGCTTCGTCGCTCTCCATGCGTGCT
TGGCAAAATTTGTGCTTGCATGGCCACGACATTCTTAACATCGCACGACA
TGCCGCAAGACAACAATGAGGGGCTCCGAGCTGCCTTGCAGTTCTTGCGG
CGGAGGCTGCTCGACTCATTAAGGCACACATGTTCTTGGCCTCCCCTAGC
CTGGATGCCACATCCGCGGATATAGAACGTCACTCATGCATCACTCAACT
CCCCTACTCCCCTCCCTCCCCCACTTCCCACAAAAGCAGGGGCAAGCCGG
GCAAGCAGCACCTCCAGCTGCTGCACCGGTAGCAACAGCAACAGGAGAAG
TTGCGTCAGCAGTCTGCTCAAGCAGCAGCGCAAGCAGCAGGAGCAGGATG
GAGGGCCGGGAACCATGCCCGTATCGCATTGTCGACGATGTGGGTGGAGC
CTTTTGCATGGGGTCCATCGGGGGAGGGATTTGGCACTACTTCAAGGGTG
TGCGGAACGCACCTAAAGGGGAGCGGCTGCGGGGAGGCATTTCGTCTGTC
AAGGCGCGGGCGCCGCTTGTTGGGGgtaggtgttaggctggagatatgtt
tggggagggctgggacgattgtggtacagcttatagcctggttgagatgc
tttcatgctcctggtacctcttgacatggtgcttatgggtttaccggaaa
taagggggataaatggggaatgtggtcgtgaaagagagattgcgttgggt
tatgcgtgcattgtgtctacaatattcctgctccgtactgccacgacact
cattcatctttctctctcctggccttacgttcaattacgtttaacagGTG
CTTTTGCCGTATGGGGACTCTGCTTTGCCAGTTTCGATTGTAGCATAGCG
GCTGTACGAAAGAAGgttcgtttaatctgagggttgtagcgggtagtccc
tcaaccgcctttctctcatgccttggttttctcatttatattcacctttg
aataaccacagGAGGATCCTTGGAATGCAATCCTATCAGGCGCTTGCACC
GGCGGTCTTCTGGCGATAAGAGCAGGGCCCAAGGCCGCGGGCAAGAATGC
AGTGATTGGTGGTTTGGTCCTTGCCATGATCGAGGGTGCTTCGATTGCGA
TCACGAAGgtaggtgagagaggaagggagaagaagggatatagaacgttt
gacaatatggaggagaagaagagggagaaagagaaggataaaaagatgag
aggcagagttgtaggcatgggaggaagaaagcaaaaccagaccatcgagg
agaccgtgtgactgattcatttttttatccccccttccctccttccctcc
ttccctcccctcacttgacatcaatcctttttcctcgaccttcccctcca
caaacagTTTTTCGCTCCTCCGGCCTCGACTCCCGAAATGGGCGGGCCGG
CCATGCCCGACCCGACTCTTCCACCCACCGGTCCGGGTATGCTTTCGGGC
TTTGGTGGTGGCGGTGGGGGCGGGGGGTATGATGGGAGTGGTTCGTCGAC
TCCGTCTTATGCTGATGATCCTGATGCGCCCTCGACAGGCGGCGGATTTG
ACACGGGCGTGAGTGGAAGTTGGGGAGGGGATGGAGGAGGAGGAGGAGGA
GGGGGAGGGGCAGGAGGGATGGGGGGAGGGTACTCGTCAGTACCAGAGCC
GAGTGGAGGGGGAGGAGGAAGTGGATGGTTTGGAGGAATGTTCGGTGGGA
GTAAGTGATGGAGTACAGAGGAGGGACGGAGGCACAGAATAACACAATTT
TGGGTTGGAATGGTTGAGATGAAAGGAGCGAAGGAGAGGGGAGTAGAAGG
CCATTCTTGACAAAGTTGGGTGGAAATACAGAGAAGAAAATGAAAATGCT
GTGATCTATGTTGAAAATAGCAACAGAGAGCTTTGTCGTGGTTATGTGTG
CTGGATCGGTTAATAATGCGATTGTGGGTGGGGCAGTGGTCATGGCTAAT
TTAGTTGGGTGTCCACATTGCTGAGGCCCTCAGAAAGGAGTAGCAGCGAA
ATGGGAAAGAAGAAAGTAAAGCAAGTTTAAACAAGGACAG
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protein sequence of NO01G03600.1

>NO01G03600.1-protein ID=NO01G03600.1-protein|Name=NO01G03600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MHHSTPLLPSLPHFPQKQGQAGQAAPPAAAPVATATGEVASAVCSSSSAS
SRSRMEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRG
GISSVKARAPLVGGAFAVWGLCFASFDCSIAAVRKKEDPWNAILSGACTG
GLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPPASTPEMGGPA
MPDPTLPPTGPGMLSGFGGGGGGGGYDGSGSSTPSYADDPDAPSTGGGFD
TGVSGSWGGDGGGGGGGGGAGGMGGGYSSVPEPSGGGGGSGWFGGMFGGS
K*
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Synonyms
Publications