NO01G03510, NO01G03510 (gene) Nannochloropsis oceanica

Overview
NameNO01G03510
Unique NameNO01G03510
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1106
Alignment locationchr1:916657..917762 +

Link to JBrowse

Properties
Property NameValue
DescriptionVamp-like protein ykt62
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:916657..917762 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of NO01G03510 vs. NCBI_GenBank
Match: EWM29285.1 (vamp-like protein ykt62 [Nannochloropsis gaditana])

HSP 1 Score: 389.4 bits (999), Expect = 6.600e-105
Identity = 190/199 (95.48%), Postives = 198/199 (99.50%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MKIVAI+LHRYQ+DTPEPIIL+S TELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQES+TYPP+QEAIREYQDPAKADKITKIRRDLDETT+ILHKTIDAVLERGVKLDELV+RSNDLSSQSKLFYKQARKTNSCC+IS
Sbjct:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: CBJ28188.1 (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) [Ectocarpus siliculosus])

HSP 1 Score: 284.3 bits (726), Expect = 3.000e-73
Identity = 133/199 (66.83%), Postives = 167/199 (83.92%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MK+V+I   RY +DT EP++L+   EL S+G+FQR GI+EMC F SKT++KR QPGQRQ++QHE+YNVH ++R DGL GTV ADLEYPPRVAFVLL+ LLE++A  + +W S  + E+I +PP+ + I +YQDPAKADKITKI+RDLDETTE+LH+TID VLERGV+LDELVDRS+DLS QSK+FYKQARKTNSCC +S
Sbjct:    1 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV-SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: GAX28755.1 (synaptobrevin homolog YKT6 [Fistulifera solaris])

HSP 1 Score: 259.2 bits (661), Expect = 1.000e-65
Identity = 123/200 (61.50%), Postives = 161/200 (80.50%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFA-VDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MK+V +++ R   D  EP+ LT ATEL SFG+FQR  ++EM  F++KT +KR +PGQRQ+++HE Y VHC++R+DGLGGTV  D EYP RVAFV+L  LL+ FA     +W +VT  ES+T+PP  E +++YQ+PA+ADKITKI++DLDETT+ILHKTID+VLERGVKLD LV++SNDLS+QSKLFYK A+KTNSCC +S
Sbjct:    1 MKVVGLAIVRTGSDLNEPVPLTVATELSSFGFFQRQSVKEMLMFLTKTFMKRTEPGQRQSVEHEGYVVHCYVRSDGLGGTVTTDGEYPARVAFVMLGQLLDEFAQKQGDSWKTVTTPESVTFPPADEYLQKYQNPAEADKITKIQKDLDETTQILHKTIDSVLERGVKLDNLVEKSNDLSAQSKLFYKSAKKTNSCCVVS 200          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: GAX18204.1 (synaptobrevin homolog YKT6 [Fistulifera solaris])

HSP 1 Score: 258.1 bits (658), Expect = 2.300e-65
Identity = 123/200 (61.50%), Postives = 161/200 (80.50%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFA-VDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MKIV +++ R   D  EP+ LT ATEL SFG+FQR  ++EM  F++KT +KR +PGQRQ+++HE Y VHC++R+DGLGGTV  D EYP RVAFV+L  LL+ FA     +W +VT  ES+++PP  E +++YQ+PA+ADKITKI++DLDETT+ILHKTID+VLERGVKLD LV++SNDLS+QSKLFYK A+KTNSCC +S
Sbjct:    1 MKIVGLAIVRTGSDLNEPVPLTVATELSSFGFFQRQSVKEMLMFLTKTFMKRTEPGQRQSVEHEGYVVHCYVRSDGLGGTVTTDGEYPARVAFVMLGQLLDEFAQKQGDSWKTVTTPESVSFPPADEYLQKYQNPAEADKITKIQKDLDETTQILHKTIDSVLERGVKLDNLVEKSNDLSAQSKLFYKSAKKTNSCCVVS 200          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: OEU22359.1 (snare-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 255.8 bits (652), Expect = 1.100e-64
Identity = 124/200 (62.00%), Postives = 157/200 (78.50%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDI-TNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MK++A+S  R   + P+PII     EL SFG+FQR  I+EM  F++KT +KR +PGQRQ+I HE Y VHC++R+DGLGGTVI D EYP RVAFVLLS +L+ F   +   W + T  ES+T+P ++E + +YQDP+ ADKITKI+ DLDETT+ILHKTID+VLERGVKLD LV+RSNDLS+QSK+FYKQA+KTNSCC IS
Sbjct:    1 MKLLALSTVRTGNELPDPIIACFEAELSSFGFFQRPTIKEMLSFLTKTFMKRTEPGQRQSITHEGYVVHCYIRSDGLGGTVITDEEYPARVAFVLLSQILDEFTTSVGDTWKTCTVHESMTFPALKEYLTKYQDPSAADKITKIQNDLDETTQILHKTIDSVLERGVKLDNLVERSNDLSAQSKMFYKQAKKTNSCCVIS 200          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: XP_002182037.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46577.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 250.4 bits (638), Expect = 4.800e-63
Identity = 120/200 (60.00%), Postives = 157/200 (78.50%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDI-TNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS 200
            MK+V +++ R   D  EPI LT + +L SFG+FQR  ++EM  F++KT  KR +PGQRQ+++HE Y VHC++R DGLGGTV  D EYP RVAFVLL  LLE F  +   +W +VT  ES+ +   +E +++YQ+PA+ADK+TKI++DLDETT+ILHKTID+VLERGVKLD LVD+SNDLS+QSK+FYKQA+KTNSCC IS
Sbjct:    1 MKVVGLAVVRTGSDLNEPIPLTVSNDLSSFGFFQRQSVKEMLMFLTKTFTKRTEPGQRQSVEHEGYVVHCYVRADGLGGTVTTDQEYPARVAFVLLGQLLEDFTNEHGDSWKTVTTPESVVFTKAEEYLQKYQNPAEADKVTKIQKDLDETTQILHKTIDSVLERGVKLDSLVDKSNDLSAQSKMFYKQAKKTNSCCVIS 200          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: CCI40594.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 240.0 bits (611), Expect = 6.500e-60
Identity = 118/199 (59.30%), Postives = 152/199 (76.38%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDIT-NWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTI 199
            MKIVAI L R  KD  +P+IL +A EL SFGYFQR+G+REM  F S+T IKR Q GQRQ+IQHEEY  H +++ DGL G V+ D EYPPRVAF LL+ L+E +  ++  +W S T      +PP+ +A+ +YQDP+KADKI+ I+++LDETT IL KTID VLERG KLD+LV++S DLS+QSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDKDGQDPLILAAAYELSSFGYFQRSGVREMINFFSRTFIKRSQAGQRQSIQHEEYTCHVYVKADGLSGIVVTDQEYPPRVAFALLNKLMESYHTELNGSWKSHTGNPK-DWPPLGKAVTDYQDPSKADKISAIQKELDETTAILSKTIDNVLERGEKLDDLVNKSQDLSNQSKVFYKQAKKTNSCCVV 198          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: XP_009537159.1 (hypothetical protein PHYSODRAFT_356041 [Phytophthora sojae] >EGZ07593.1 hypothetical protein PHYSODRAFT_356041 [Phytophthora sojae])

HSP 1 Score: 233.4 bits (594), Expect = 6.100e-58
Identity = 118/199 (59.30%), Postives = 148/199 (74.37%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQES-ITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTI 199
            MKIVAI L R      +P IL++  E+ SFGYFQR+G+REM  F S+T +KR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ F  D TN    TQ  S   + P+  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPTILSAGFEVSSFGYFQRSGVREMINFFSRTFVKRTEPGQRQSIQHEEYNCHVYVRRDGLAGIVVCDQEYPPRVAFALLNKLMDEF--DKTNSGWKTQSGSPQEFAPLTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 197          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: OWZ21759.1 (Synaptobrevin [Phytophthora megakarya])

HSP 1 Score: 229.6 bits (584), Expect = 8.800e-57
Identity = 112/198 (56.57%), Postives = 143/198 (72.22%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTI 199
            MKIVAI L R      +P+IL++  E+ SFGYFQR+G+REM  F S+T IKR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ +                 + P+  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPMILSAGFEVSSFGYFQRSGVREMINFFSRTFIKRTEPGQRQSIQHEEYNCHVYVRRDGLAGIVVCDQEYPPRVAFALLNKLMDEYDKSTGGSWKTQSGNPQEFAPLTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 198          
BLAST of NO01G03510 vs. NCBI_GenBank
Match: XP_002904125.1 (synaptobrevin-like protein [Phytophthora infestans T30-4] >EEY54303.1 synaptobrevin-like protein [Phytophthora infestans T30-4])

HSP 1 Score: 229.2 bits (583), Expect = 1.100e-56
Identity = 114/199 (57.29%), Postives = 147/199 (73.87%), Query Frame = 0
Query:    1 MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDI-TNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDETTEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTI 199
            MKIVAI L R      +PIIL+++ E+ SFGYFQR+G+REM  F S+T IKR +PGQRQ+IQHEEYN H ++R DGL G V+ D EYPPRVAF LL+ L++ +      NW + +      +  +  A+ EYQDP+KADKI+ I+++LDETT +L KTID VLERG KLD+LV +S DLSSQSK+FYKQA+KTNSCC +
Sbjct:    1 MKIVAIELLRQDGQGQDPIILSASFEVSSFGYFQRSGVREMINFFSRTFIKRTEPGQRQSIQHEEYNCHVYVRRDGLSGIVVCDQEYPPRVAFALLNKLMDEYDKSTGGNWKTQSGNPQ-EFAALTTALAEYQDPSKADKISAIQKELDETTAVLSKTIDNVLERGEKLDDLVSKSQDLSSQSKVFYKQAKKTNSCCVV 198          
The following BLAST results are available for this feature:
BLAST of NO01G03510 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29285.16.600e-10595.48vamp-like protein ykt62 [Nannochloropsis gaditana][more]
CBJ28188.13.000e-7366.83Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
GAX28755.11.000e-6561.50synaptobrevin homolog YKT6 [Fistulifera solaris][more]
GAX18204.12.300e-6561.50synaptobrevin homolog YKT6 [Fistulifera solaris][more]
OEU22359.11.100e-6462.00snare-like protein [Fragilariopsis cylindrus CCMP1... [more]
XP_002182037.14.800e-6360.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
CCI40594.16.500e-6059.30unnamed protein product [Albugo candida][more]
XP_009537159.16.100e-5859.30hypothetical protein PHYSODRAFT_356041 [Phytophtho... [more]
OWZ21759.18.800e-5756.57Synaptobrevin [Phytophthora megakarya][more]
XP_002904125.11.100e-5657.29synaptobrevin-like protein [Phytophthora infestans... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007961NSK007961Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03510.1NO01G03510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577080gene_352Nannochloropsis oceanica (N. oceanica CCMP1779)gene
SNR10gene1344Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03510.1NO01G03510.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03510 ID=NO01G03510|Name=NO01G03510|organism=Nannochloropsis oceanica|type=gene|length=1106bp
ATGAAGATTGTGGCCATTTCCTTGCATCGCTACCAGAAAGACACGCCTGA
GCCTATCATCTTAACGTCGGCCACGGAGCTCGAGAGCTTTGGCTACTTCC
AGCGTAATGGgtaaggaagcgaagggggggaaaggaggggggaattattc
cggcgcataaagcgagaagcaacaacacaccccactcatgctgcttcgtc
tatgccctgtccgaaactcattcaatgcgctcttttccacaccatttttc
acaccatccatctatattacagTATCCGTGAGATGTGCCGCTTTATGAGC
AAGACTCTTATCAAACGCTGCCAGCCGGGTCAACGGCAAACCATTCAGCA
TGAAGgtacatcatatgcacatctccgtgaccattgatgctgctgccata
gcttttgtgatatttgtttgtttttcctttatcgtcagtatttcaaatta
tatgttaactcaaataaacagAATACAACGTGCATTGTCACTTGAGGACA
GACGGTCTTGGCGGCACCGTCATTGCCGACTTGGAGTATCCCCCACGCGT
CGCCTTCGTCCTCCTCTCCACCCTCCTCGAGCGCTTCGCCGTCGATATCA
Cgtacgtctagaaagtggtgagggggaatgagggaaagctcgccaccttc
ataacgactagcacgccacacgcgcttattccttcattctcgctttccac
caactgccgacagCAACTGGTCTTCCGTCACACAGCAAGAATCTATTACT
TACCCGCCCATTCAAGAAGCCATTCGAGAATATCAAGACCCGGCCAAGGC
CGATAAGATTACGAAAATCCGCCGCGACCTGGACGAGACGACGGAGATTT
TGgtgaggagttgggggggggtatgacggagtgttcttaaacgagaaatc
gagaaggtcgagcaacaactcatttcacgcctctttccctttgctttctt
tcttcgggctacacacagCACAAGACAATCGACGCAGTACTTGAGCGGGG
GGTCAAGCTGGACGAGCTAGTAGACAGGTCCAACGATCTGAGTAGTCAAA
GCAAGCTTTTCTACAAGCAGGCACGCAAGACCAATTCATGCTGCACCATC
TCATGA
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protein sequence of NO01G03510.1

>NO01G03510.1-protein ID=NO01G03510.1-protein|Name=NO01G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MKIVAISLHRYQKDTPEPIILTSATELESFGYFQRNGIREMCRFMSKTLI
KRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLL
ERFAVDITNWSSVTQQESITYPPIQEAIREYQDPAKADKITKIRRDLDET
TEILHKTIDAVLERGVKLDELVDRSNDLSSQSKLFYKQARKTNSCCTIS*
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Synonyms
Publications