NO01G03480, NO01G03480 (gene) Nannochloropsis oceanica

Overview
NameNO01G03480
Unique NameNO01G03480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1249
Alignment locationchr1:906468..907716 +

Link to JBrowse

Properties
Property NameValue
DescriptionNADH:ubiquinone oxidoreductase, ESSS subunit
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:906468..907716 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G03480 vs. NCBI_GenBank
Match: EWM29270.1 (NADH:ubiquinone oxidoreductase, ESSS subunit [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 1.000e-54
Identity = 111/137 (81.02%), Postives = 118/137 (86.13%), Query Frame = 0 
Query:   48 MLFAARSAGTVAL-RGLSRQPPATLRQPARRMMGGGGHSPAPHPSQPKQAFLFNEGPGPRKVEIWEPITSIVYWSTLFILVIGLSSAPETRIKEWAAEEAETRLARIEEGKDVEYGKIYHKQLLTGGFVEHTALNAD 184
            MLFAARSA T AL RGL    P  +R  ARRMMGGGGHSPAPHPSQPKQAFLFNEGPGPRKVE+WEPITS VYWS   ILV+GL +APETRI+EWAAEEAE RLARIEEGKDVEYG IYHKQLLTGGFV+H+A NAD
Sbjct:    1 MLFAARSAATSALRRGLGHPQPHFVRHGARRMMGGGGHSPAPHPSQPKQAFLFNEGPGPRKVEMWEPITSTVYWSAFLILVVGLYNAPETRIQEWAAEEAEARLARIEEGKDVEYGHIYHKQLLTGGFVQHSAANAD 137
[Close]
BLAST of NO01G03480 vs. NCBI_GenBank
Match: XP_009037842.1 (hypothetical protein AURANDRAFT_64839 [Aureococcus anophagefferens] >EGB07205.1 hypothetical protein AURANDRAFT_64839 [Aureococcus anophagefferens])

HSP 1 Score: 65.9 bits (159), Expect = 1.600e-7
Identity = 38/98 (38.78%), Postives = 51/98 (52.04%), Query Frame = 0 
Query:   79 MGGGGHSPAPHPSQPKQAFLFNEGPGPRKVEIWEPITSIVYWSTLFILVIGLSSAPETRIKEWAAEEAETRLARIEEGKDVEYGKIYHKQLLTGGFVE 177
            MGGGG          +   LF E PG  K+E WEPI    Y ++  +L++GL + P T I  WA +EA  RL    EG+DVEYG  Y+ +     F +
Sbjct:  802 MGGGG----------EPGTLFGEKPG-HKMEGWEPIIYSCYGASAVLLIVGLWNKPTTSINAWAKDEANARLKLKREGEDVEYGTHYNSKAAKFAFAK 888
The following BLAST results are available for this feature:
BLAST of NO01G03480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29270.11.000e-5481.02NADH:ubiquinone oxidoreductase, ESSS subunit [Nann... [more]
XP_009037842.11.600e-738.78hypothetical protein AURANDRAFT_64839 [Aureococcus... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007964NSK007964Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03480.1NO01G03480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100029g30gene1347Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03480.1NO01G03480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03480 ID=NO01G03480|Name=NO01G03480|organism=Nannochloropsis oceanica|type=gene|length=1249bp
TCTTGCTTGTCTGCTTGTCCGCGTCTACTTCTATTCTGTCTTCCCATCTT
CCTGCTCATAATTTACATGCTGGTTGAGGTGCTGCTTGCAGGAGATGGAT
GGCATGGACAGGGGAGCCACGCAAAACTCTAAGACAACAAACAGCCGGGA
GCATCATGACCTACCGTCTCACTCACATCGGTCGTCCTCACGCCCACCCC
TCCCGCACACCGTCAACACATTGCACAGAAACACCATGTTGTTTGCAGCG
CGCTCCGCAGGCACCGTGGCTCTGCGGGGCCTGAGCAGGCAACCACCTGC
TACCTTGCGCCAGCCCGCCCGACGTATGATGGGAGGCGGCGGACACTCTC
CTGCTCCTCACCCTTCCCAACCCAAGCAAGCGTTCCTGTTCAACGAGGGC
CCCGGCCCGCGAAAGGTGGAGATCTGGGAGCCAATTACAAGCATAGTATA
CTGGTCCACGCTCTTTATTCTTGTCATCGGGCTTTCCAGCGCGCCGGAGA
CCCGTATCAAGgtatgtgttgggtgccggtggggttgtgcgttgggtggg
ataaagcacccggctgggattggacggatagtgcagtgcttcggccggta
gaaaatcatgtttggctgactcttttactttgatagtagttgcgtgcgaa
attggcgactatgatgcgacctttctccaacctctttggccctctctctt
cgtgcatgagcgtgaaagtacgttagtagaccgtacttgttctcacttta
ccaaagaaaatacggtgacacaccgttcttgttctcacttcgacaaacaa
acgcacttttcgaattacagGAATGGGCAGCGGAGGAGGCGGAGACACGG
TTGGCAAGGATAGAGGAAGGGAAGGACGTGGAGTATGGAAAGATTTACCA
CAAACAACTACTCACGGGCGGCTTTGTCGAACACACGGCCCTAAATGCTG
ATAACCCACCCGAAGAGTTGGAAGGGGAGGAGGAGGATTAAATTGAGAAA
GATCAGGAGCAAGTGGATCGATGAAAAATGTGTTATGTTGAAGAAAAGGG
GTGGGTCTTTGTCGGCTGGTGAGCGCCGGCAGTGTGGTTGGAGAATGACT
GAGAAGCAGAGGAAAAAAATAGTCAGTGCAGACAAGCGAGAGCAGAGGGA
GAAGCAGGAAAAGAATAAGAAGAAGGCGTTGAATGGGGAGGGGGAACTAT
TTTGTCGTCGCATCTTTTCGTGGCTTTCAGGTCTGTTCCTTCTTACTTG
back to top

protein sequence of NO01G03480.1

>NO01G03480.1-protein ID=NO01G03480.1-protein|Name=NO01G03480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=196bp
MDGMDRGATQNSKTTNSREHHDLPSHSHRSSSRPPLPHTVNTLHRNTMLF
AARSAGTVALRGLSRQPPATLRQPARRMMGGGGHSPAPHPSQPKQAFLFN
EGPGPRKVEIWEPITSIVYWSTLFILVIGLSSAPETRIKEWAAEEAETRL
ARIEEGKDVEYGKIYHKQLLTGGFVEHTALNADNPPEELEGEEED*
back to top
Synonyms
Publications