NO01G03360, NO01G03360 (gene) Nannochloropsis oceanica

Overview
NameNO01G03360
Unique NameNO01G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length378
Alignment locationchr1:878608..878985 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:878608..878985 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G03360 vs. NCBI_GenBank
Match: PQK17974.1 (hypothetical protein BB8028_0009g01720 [Beauveria bassiana])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I+   L  + LP I+V+LD ATG  FSLNNRRL+VFK  +  G L+ + VR+      +    +YT+  CA  A++
Sbjct:   24 CGRRVQDTLDAILRDDLRAQDLPPISVLLDPATGHLFSLNNRRLYVFKALRAAGRLDAVPVRIKPVPQTKRMRDKYTSHKCAKVARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_018708302.1 (hypothetical protein ISF_00245 [Cordyceps fumosorosea ARSEF 2679] >OAA73344.1 hypothetical protein ISF_00245 [Cordyceps fumosorosea ARSEF 2679])

HSP 1 Score: 73.6 bits (179), Expect = 3.900e-10
Identity = 40/87 (45.98%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV DTL   + G L P  LP I+V+ D ATG  FSLNNRRL+VFK  +  G LE +  RV      +    +Y A+ CA  A++
Sbjct:   24 CGRRVRDTLDAALRGSLVPADLPPISVLRDPATGHLFSLNNRRLYVFKALRAAGRLETVPARVKPVPQTKRMRDKYAADKCAKTARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_001682843.1 (conserved hypothetical protein [Leishmania major strain Friedlin] >CAJ03941.1 conserved hypothetical protein [Leishmania major strain Friedlin])

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-10
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGR +E TL +  +G+L+P  LP ++V+ D A   Y+S NNRRL+V+K+ K+ GLL+ + VR+R         S+Y+ +TCAL A +
Sbjct:   36 CGRTIESTLKQFRDGELHPRDLPLLSVLTDGA--HYYSQNNRRLYVYKQLKREGLLDMLPVRLRPLPQTKRMRSKYSPQTCALNATL 120          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_001465224.1 (conserved hypothetical protein [Leishmania infantum JPCM5] >XP_003860432.1 hypothetical protein, conserved [Leishmania donovani] >CAM67471.1 conserved hypothetical protein [Leishmania infantum JPCM5] >CBZ33725.1 hypothetical protein, conserved [Leishmania donovani] >SOX64832.1 hypotheticalprotein-conserved [Leishmania infantum])

HSP 1 Score: 73.2 bits (178), Expect = 5.000e-10
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGR +E TL +  +G+L+P  LP ++V+ D A   Y+S NNRRL+V+K+ K+ GLL+ + VR+R         S+Y+ +TCAL A +
Sbjct:   36 CGRTIESTLKQFRDGELHPRDLPLLSVLTDGA--HYYSQNNRRLYVYKQLKREGLLDMLPVRLRPLPQTKRMRSKYSPQTCALNATL 120          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: KPI86707.1 (hypothetical protein ABL78_4223 [Leptomonas seymouri])

HSP 1 Score: 72.4 bits (176), Expect = 8.600e-10
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGT-YFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGR +E T+ +   G+L P  LP ++V+ D   GT YFS NNRRL+ +K+ K+ GLLE + VR+      R  +S+YT+ TC+L A +
Sbjct:   33 CGRTIESTIQQFRNGELQPRDLPLLSVLTD---GTDYFSQNNRRLYTYKQLKREGLLESVPVRLRPVPQTRRMQSKYTSATCSLTATL 117          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_001745489.1 (hypothetical protein [Monosiga brevicollis MX1] >EDQ89460.1 predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 71.2 bits (173), Expect = 1.900e-9
Identity = 41/90 (45.56%), Postives = 57/90 (63.33%), Query Frame = 0
Query:   13 GCGRRVEDTLTEIVEGKLNPEALPYITVML---DRAT--GTYFSLNNRRLWVFKECKKRGLLEHIRVRVR----TEESRYTAETCALEAK 94
            GCGR +  TL E+ +G      +P +TVM+   D  T    Y+SLNNRRL+VFK+ ++ G+L+ I VRVR     E +RYT + CAL+AK
Sbjct:   83 GCGRTLAQTLEELRDGTTKVTDIPTVTVMVRPDDDPTLPAWYYSLNNRRLYVFKQLREEGILDTIPVRVRGMKPHEVARYTPDNCALQAK 172          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_009312485.1 (hypothetical protein DQ04_05481010 [Trypanosoma grayi] >KEG09282.1 hypothetical protein DQ04_05481010 [Trypanosoma grayi])

HSP 1 Score: 69.3 bits (168), Expect = 7.300e-9
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGR +E TL + +  +L P  LP + V+ D   G Y+S NNRRL+++KE ++RG+L  + VR+      R    +YT E CAL A +
Sbjct:   31 CGRTIESTLEQFLRRELTPRDLPLLCVLTD-GKGNYYSQNNRRLFLYKELQRRGMLTTVPVRLRQMPDTRRMRGKYTPEKCALHATL 116          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_015653742.1 (hypothetical protein ABB37_08603 [Leptomonas pyrrhocoris] >XP_015653743.1 hypothetical protein ABB37_08603 [Leptomonas pyrrhocoris] >KPA75303.1 hypothetical protein ABB37_08603 [Leptomonas pyrrhocoris] >KPA75304.1 hypothetical protein ABB37_08603 [Leptomonas pyrrhocoris])

HSP 1 Score: 68.9 bits (167), Expect = 9.500e-9
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGT-YFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGR +E T+ +  +G L P  LP ++V+ D   GT Y+S NNRRL+ +K+ K+ GLL  + VR+R         S+YT ETC+L A +
Sbjct:   33 CGRTIESTIQQFRDGALQPRDLPLLSVLTD---GTHYYSQNNRRLYTYKQLKREGLLAVVPVRLRPFPQTKRMNSKYTPETCSLTATL 117          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_807908.1 (hypothetical protein [Trypanosoma cruzi strain CL Brener] >EAN86057.1 hypothetical protein, conserved [Trypanosoma cruzi])

HSP 1 Score: 68.6 bits (166), Expect = 1.200e-8
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGR +  TL + +  ++ P  LP + V+ D+A G  +SLNNRRL+++KE K+RG+LE +  R+      R    +YT E CAL A +
Sbjct:   31 CGRTIASTLDQFLRCEVTPNDLPLLCVLTDKA-GRCYSLNNRRLYLYKELKERGVLETVPARLRRMPDTRRMREKYTPEKCALRATL 116          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_003875153.1 (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >CBZ26658.1 conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 68.2 bits (165), Expect = 1.600e-8
Identity = 35/87 (40.23%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGR +E TL +  +G+L+P  LP ++V+ D      +S NNRRL+V+K+ K+ GLL+ + VR+R         S+Y+ +TCAL A +
Sbjct:   36 CGRTIESTLKQFRDGELHPRDLPLLSVLTDGE--NCYSQNNRRLYVYKQLKREGLLDTLPVRLRPLPQTKRMHSKYSPKTCALNATL 120          
The following BLAST results are available for this feature:
BLAST of NO01G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PQK17974.12.300e-1044.83hypothetical protein BB8028_0009g01720 [Beauveria ... [more]
XP_018708302.13.900e-1045.98hypothetical protein ISF_00245 [Cordyceps fumosoro... [more]
XP_001682843.15.000e-1042.53conserved hypothetical protein [Leishmania major s... [more]
XP_001465224.15.000e-1042.53conserved hypothetical protein [Leishmania infantu... [more]
KPI86707.18.600e-1043.18hypothetical protein ABL78_4223 [Leptomonas seymou... [more]
XP_001745489.11.900e-945.56hypothetical protein [Monosiga brevicollis MX1] >E... [more]
XP_009312485.17.300e-940.23hypothetical protein DQ04_05481010 [Trypanosoma gr... [more]
XP_015653742.19.500e-942.05hypothetical protein ABB37_08603 [Leptomonas pyrrh... [more]
XP_807908.11.200e-840.23hypothetical protein [Trypanosoma cruzi strain CL ... [more]
XP_003875153.11.600e-840.23conserved hypothetical protein [Leishmania mexican... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007982NSK007982Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03360.1NO01G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636698gene_337Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03360.1NO01G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03360 ID=NO01G03360|Name=NO01G03360|organism=Nannochloropsis oceanica|type=gene|length=378bp
ATGGGAGCCAAGAAGGGCGGCAGCAGTGGAGGGGGAGgtaagggtggccg
gccgcagccctttttcacagaggtggaccctgctattatctatttctcgc
acgcgcgcatccgcacaacattttcagGCTGCGGGCGGAGGGTGGAGGAC
ACATTGACAGAAATTGTGGAGGGAAAACTGAATCCGGAAGCGCTGCCTTA
TATAACTGTCATGTTGGACCGCGCCACGGGGACGTACTTCTCTCTCAACA
ACCGACGCTTGTGGGTGTTCAAGGAATGCAAGAAGCGAGGTCTATTGGAA
CACATCCGCGTGCGCGTACGGACTGAAGAATCTCGGTATACAGCCGAAAC
CTGTGCGCTGGAAGCCAAGATGTGTTAA
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protein sequence of NO01G03360.1

>NO01G03360.1-protein ID=NO01G03360.1-protein|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MGAKKGGSSGGGGCGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYF
SLNNRRLWVFKECKKRGLLEHIRVRVRTEESRYTAETCALEAKMC*
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Synonyms
Publications