NO01G03360, NO01G03360 (gene) Nannochloropsis oceanica

Overview
NameNO01G03360
Unique NameNO01G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length378
Alignment locationchr1:878608..878985 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:878608..878985 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO01G03360 vs. NCBI_GenBank
Match: EJK60896.1 (hypothetical protein THAOC_18687, partial [Thalassiosira oceanica])

HSP 1 Score: 78.6 bits (192), Expect = 1.200e-11
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 0
Query:   13 GCGRRVEDTLTEIVEGKLNPEALPYITVML-----DRATGTYFSLNNRRLWVFKECKKRGLLEH------IRVRVR-----TEESRYTAETCALEAK 94
            GCGR V  TL EI  G+L P ALP I V++     D     YFSLNNRRLWV K+C + GLL++      I+VRVR     +E  RY+ + C+L+AK
Sbjct:  192 GCGRSVVGTLDEIRGGRLEPSALPPIQVLVGPDGDDGMGPWYFSLNNRRLWVLKQCHREGLLDNERYGNMIQVRVRVPKSDSERERYSVKNCSLDAK 288          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_002296946.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86674.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 77.4 bits (189), Expect = 2.700e-11
Identity = 48/97 (49.48%), Postives = 56/97 (57.73%), Query Frame = 0
Query:   13 GCGRRVEDTLTEIVEGKLNPEALPYITVML-----DRATGTYFSLNNRRLWVFKECKKRGLLEH------IRVRVRTEES-----RYTAETCALEAK 94
            GCGR V +TL EI  G L P  LP I V++     D     YFSLNNRRLWV K+C K GLL +      I VRVR  +S     RY+ + CALEAK
Sbjct:   61 GCGRSVVETLDEIRRGDLKPADLPPIQVLIGPEGNDGLGPWYFSLNNRRLWVLKQCYKEGLLNNSTYNNTIPVRVRLPKSDAELERYSVDNCALEAK 157          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: OAA82365.1 (hypothetical protein LEL_01910 [Cordyceps confragosa RCEF 1005])

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-11
Identity = 41/87 (47.13%), Postives = 56/87 (64.37%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I++ +L  E LP I+V+LD ATG  FSLNNRRL+VFK  +  G L+ +  RV      +    +YTA+ CA  A++
Sbjct:   24 CGRRVQDTLDAILKRELRAEDLPPISVLLDPATGHLFSLNNRRLYVFKTLQAAGRLQTVPARVKPVPQTKRMRDKYTADKCAKTARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: OAA37357.1 (hypothetical protein BBO_07739 [Cordyceps brongniartii RCEF 3172])

HSP 1 Score: 76.3 bits (186), Expect = 5.900e-11
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I+   L  + LP I+V+LD ATG +FSLNNRRL+VFK  +  G L+ + VRV      +    +YT+  CA  A++
Sbjct:   24 CGRRVQDTLDAILRDDLRAQDLPPISVLLDPATGHFFSLNNRRLYVFKALRAAGRLDAVPVRVKPVPQTKRMRDKYTSHKCAKVARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: CEJ92653.1 (hypothetical protein VHEMI08289 [Torrubiella hemipterigena])

HSP 1 Score: 75.9 bits (185), Expect = 7.800e-11
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVR------VRTEESRYTAETCALEAKM 95
            CGRR+EDTL  I   +L  E LP I+V+LD  TG  FSLNNRRL+VFK  +  GLLE + VR       +  + +YT++ C   A++
Sbjct:   24 CGRRIEDTLNAIRNKELRAEDLPPISVLLDPTTGDMFSLNNRRLFVFKTLQAEGLLETVPVRTKPVPQTKRMKDKYTSDKCVKMARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_006674381.1 (hypothetical protein CCM_09184 [Cordyceps militaris CM01] >EGX88048.1 hypothetical protein CCM_09184 [Cordyceps militaris CM01])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGRRV DTL  ++   L+P+ LP I+V+ D +TG  FSLNNRRL+VFK  +  G L+ + VRVR          +Y+A+ C+  A++
Sbjct:   24 CGRRVHDTLEAVLRRDLDPQDLPPISVLRDPSTGHLFSLNNRRLYVFKALRAAGRLDTVAVRVRPVPQTKRMRDKYSADRCSKTARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: XP_008593367.1 (hypothetical protein BBA_00048 [Beauveria bassiana ARSEF 2860] >EJP70418.1 hypothetical protein BBA_00048 [Beauveria bassiana ARSEF 2860])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I+   L  + LP I+V+LD ATG  FSLNNRRL+VFK  +  G L+ + VR+      +    +YT+  CA  A++
Sbjct:   24 CGRRVQDTLDAILRDDLRAQDLPPISVLLDPATGHLFSLNNRRLYVFKALRAAGRLDAVPVRIKPVPQTKRMRDKYTSHKCAKVARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: KGQ11796.1 (hypothetical protein BBAD15_g2451 [Beauveria bassiana D1-5])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I+   L  + LP I+V+LD ATG  FSLNNRRL+VFK  +  G L+ + VR+      +    +YT+  CA  A++
Sbjct:   24 CGRRVQDTLDAILRDDLRAQDLPPISVLLDPATGHLFSLNNRRLYVFKALRAAGRLDAVPVRIKPVPQTKRMRDKYTSHKCAKVARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: ATY62126.1 (hypothetical protein A9K55_009286 [Cordyceps militaris])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 38/87 (43.68%), Postives = 55/87 (63.22%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRVR------TEESRYTAETCALEAKM 95
            CGRRV DTL  ++   L+P+ LP I+V+ D +TG  FSLNNRRL+VFK  +  G L+ + VRVR          +Y+A+ C+  A++
Sbjct:   24 CGRRVHDTLEAVLRRDLDPQDLPPISVLRDPSTGHLFSLNNRRLYVFKALRAAGRLDTVAVRVRPVPQTKRMRDKYSADRCSKTARL 110          
BLAST of NO01G03360 vs. NCBI_GenBank
Match: PMB66188.1 (hypothetical protein BM221_008390 [Beauveria bassiana])

HSP 1 Score: 74.3 bits (181), Expect = 2.300e-10
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 0
Query:   14 CGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYFSLNNRRLWVFKECKKRGLLEHIRVRV------RTEESRYTAETCALEAKM 95
            CGRRV+DTL  I+   L  + LP I+V+LD ATG  FSLNNRRL+VFK  +  G L+ + VR+      +    +YT+  CA  A++
Sbjct:   24 CGRRVQDTLDAILRDDLRAQDLPPISVLLDPATGHLFSLNNRRLYVFKALRAAGRLDAVPVRIKPVPQTKRMRDKYTSHKCAKVARL 110          
The following BLAST results are available for this feature:
BLAST of NO01G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EJK60896.11.200e-1147.42hypothetical protein THAOC_18687, partial [Thalass... [more]
XP_002296946.12.700e-1149.48predicted protein [Thalassiosira pseudonana CCMP13... [more]
OAA82365.13.500e-1147.13hypothetical protein LEL_01910 [Cordyceps confrago... [more]
OAA37357.15.900e-1145.98hypothetical protein BBO_07739 [Cordyceps brongnia... [more]
CEJ92653.17.800e-1145.98hypothetical protein VHEMI08289 [Torrubiella hemip... [more]
XP_006674381.12.300e-1043.68hypothetical protein CCM_09184 [Cordyceps militari... [more]
XP_008593367.12.300e-1044.83hypothetical protein BBA_00048 [Beauveria bassiana... [more]
KGQ11796.12.300e-1044.83hypothetical protein BBAD15_g2451 [Beauveria bassi... [more]
ATY62126.12.300e-1043.68hypothetical protein A9K55_009286 [Cordyceps milit... [more]
PMB66188.12.300e-1044.83hypothetical protein BM221_008390 [Beauveria bassi... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007982NSK007982Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03360.1NO01G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|636698gene_337Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03360.1NO01G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03360 ID=NO01G03360|Name=NO01G03360|organism=Nannochloropsis oceanica|type=gene|length=378bp
ATGGGAGCCAAGAAGGGCGGCAGCAGTGGAGGGGGAGgtaagggtggccg
gccgcagccctttttcacagaggtggaccctgctattatctatttctcgc
acgcgcgcatccgcacaacattttcagGCTGCGGGCGGAGGGTGGAGGAC
ACATTGACAGAAATTGTGGAGGGAAAACTGAATCCGGAAGCGCTGCCTTA
TATAACTGTCATGTTGGACCGCGCCACGGGGACGTACTTCTCTCTCAACA
ACCGACGCTTGTGGGTGTTCAAGGAATGCAAGAAGCGAGGTCTATTGGAA
CACATCCGCGTGCGCGTACGGACTGAAGAATCTCGGTATACAGCCGAAAC
CTGTGCGCTGGAAGCCAAGATGTGTTAA
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protein sequence of NO01G03360.1

>NO01G03360.1-protein ID=NO01G03360.1-protein|Name=NO01G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MGAKKGGSSGGGGCGRRVEDTLTEIVEGKLNPEALPYITVMLDRATGTYF
SLNNRRLWVFKECKKRGLLEHIRVRVRTEESRYTAETCALEAKMC*
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Synonyms
Publications