NO01G03340, NO01G03340 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_008406447.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X2 [Poecilia reticulata]) HSP 1 Score: 71.2 bits (173), Expect = 9.300e-9 Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVH--GGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LSV+E W+ FR+ P FV S +Y +FR +G+V GG G+DLMLYR P YHA + V++ ER GE G SWR L L R+ V K L+L ++ Sbjct: 246 LSVVELWRTFRSLRPDFVSSYAAYHHFRSRGWVPKGGGGAKYGVDLMLYRKGPPFYHASYSVVV--------------ERTGESLGGAAL----RPFSWRSLAALSRITASVSKELMLCYI 348
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_004337899.1 (tRNA intron endonuclease, catalytic Cterminal subfamily protein [Acanthamoeba castellanii str. Neff] >ELR15886.1 tRNA intron endonuclease, catalytic Cterminal subfamily protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 0 Query: 245 RVLSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLIL 363 R + V ECW AF A F + +YR++R+ +VV G+ G D +LYR P YHAE+ V++ + GEG + LSWR+L L RL +V K L+L Sbjct: 349 RFMGVDECWSAFCAAQGGFAYTYAAYRHYRQHNWVVKSGIKYGTDFVLYRRGPAHYHAEWSVVV--------------QASGEGVVCGQWSAGGRQLSWRNLATLNRLSEQVAKGLLL 452
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_010629826.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X1 [Fukomys damarensis]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = 0 Query: 243 KPRVLSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWYRGLSVYEVAVTPW 414 K L++++ WKAF PTF + G+Y YFR +G+V GL G DL+LYR P YHA + V++ L ++G G +W+ L L R+ G V K L+L ++ KP D E E R + V EV ++ W Sbjct: 290 KKEPLTIVKLWKAFTAIQPTFRTTYGAYHYFRSKGWVPKTGLKYGTDLLLYRKGPPFYHASYSVIV-----------ELVDKGFAGPL-------RRPFTWKSLATLSRVSGNVSKELMLCYL------IKPSTMTDEDMES------------PECLRRIKVQEVILSRW 424
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_010629836.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X3 [Fukomys damarensis]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 51/171 (29.82%), Postives = 74/171 (43.27%), Query Frame = 0 Query: 243 KPRVLSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWYRGLSVYEVAVTPW 414 K L++++ WKAF PTF + G+Y YFR +G+V GL G DL+LYR P YHA + V++ L ++G G +W+ L L R+ G V K L+L ++ KP D E E R + V EV ++ W Sbjct: 247 KKEPLTIVKLWKAFTAIQPTFRTTYGAYHYFRSKGWVPKTGLKYGTDLLLYRKGPPFYHASYSVIV-----------ELVDKGFAGPL-------RRPFTWKSLATLSRVSGNVSKELMLCYL------IKPSTMTDEDMES------------PECLRRIKVQEVILSRW 381
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_016041048.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Erinaceus europaeus]) HSP 1 Score: 70.9 bits (172), Expect = 1.200e-8 Identity = 54/167 (32.34%), Postives = 77/167 (46.11%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWYRGLSVYEVAVTPW 414 L++M+ WKAF TA PTF + +Y +FR +G+V GL G DL+LYR P YHA + V++ + ER +G SW+ L L R+ V K L+L ++ KPE A D EM E E + + V EV ++ W Sbjct: 308 LTIMQLWKAFSTAQPTFRTTYMAYHHFRSKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVVI----------EMVNER--------FQGSLHRPFSWKSLAALSRVSVNVSKELLLCYL------IKPETMA----------DQEM--ESPECMKHIKVQEVILSRW 438
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_014873847.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Poecilia latipinna]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 45/121 (37.19%), Postives = 59/121 (48.76%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVH--GGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LSV+E W+ FR P FV S +Y +FR +G+V GG G+DLMLYR P YHA + V++ ER GE G SWR L L R+ V K L+L ++ Sbjct: 246 LSVVELWRTFRLLRPDFVSSYAAYHHFRSRGWVPKGGGGAKYGVDLMLYRKGPPFYHASYSVVV--------------ERTGESLGGAAL----RPFSWRSLAALSRITASVSKELMLCYI 348
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_014830733.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 [Poecilia mexicana]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 45/121 (37.19%), Postives = 59/121 (48.76%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVH--GGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LSV+E W+ FR P FV S +Y +FR +G+V GG G+DLMLYR P YHA + V++ ER GE G SWR L L R+ V K L+L ++ Sbjct: 246 LSVVELWRTFRLLRPDFVSSYAAYHHFRSRGWVPKGGGGAKYGVDLMLYRKGPPFYHASYSVVV--------------ERTGESLGGAAL----RPFSWRSLAALSRITASVSKELMLCYI 348
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_017306616.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X1 [Ictalurus punctatus]) HSP 1 Score: 70.5 bits (171), Expect = 1.600e-8 Identity = 41/119 (34.45%), Postives = 58/119 (48.74%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LS+++ W+ FR+A P F + +Y YFR +G+V G+ G DLMLYR P YHA + V++ ER E +G L+WR L L R V K L+ +V Sbjct: 325 LSILQVWRMFRSAQPNFEIAYAAYHYFRSKGWVPKSGIKYGTDLMLYRKGPPFYHASYSVVV--------------ERVDE----SLQGAPLRPLTWRSLAALSRTTANVSKELMFSYV 425
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_010872622.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X1 [Esox lucius]) HSP 1 Score: 70.1 bits (170), Expect = 2.100e-8 Identity = 43/119 (36.13%), Postives = 61/119 (51.26%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LSV++ W+ FR+ P F S +Y +FR +G+V G+ G DL+LYR P YHA + V++ ER +G +GE SWR L L R+ G V K L+L +V Sbjct: 340 LSVIQLWEMFRSIQPHFDTSYIAYHFFRSRGWVPKPGVKYGTDLLLYRKGPPFYHASYSVVV--------------ERVDQGLRGEAL----RPFSWRTLAALSRITGNVSKELMLCYV 440
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_014023955.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X1 [Salmo salar]) HSP 1 Score: 69.7 bits (169), Expect = 2.700e-8 Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 0 Query: 247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366 LSV++ W+ FR+ P F S +Y YFR +G+V G+ G DLMLYR P YHA + V++ + + G G SWR L L R+ G V K L+L +V Sbjct: 339 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGTDLMLYRKGPPFYHASYSVVV----------EKVDQPCGGGAL--------RPFSWRSLAALSRITGNVSKDLMLCYV 439 The following BLAST results are available for this feature:
BLAST of NO01G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03340 ID=NO01G03340|Name=NO01G03340|organism=Nannochloropsis oceanica|type=gene|length=2765bpback to top protein sequence of NO01G03340.1 >NO01G03340.1-protein ID=NO01G03340.1-protein|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bpback to top Synonyms
Publications
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