NO01G03340, NO01G03340 (gene) Nannochloropsis oceanica

Overview
NameNO01G03340
Unique NameNO01G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2765
Alignment locationchr1:873858..876622 -

Link to JBrowse

Properties
Property NameValue
DescriptiontRNA-splicing endonuclease subunit Sen2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:873858..876622 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: INTERPRO
TermDefinition
IPR036167tRNA_intron_Endo_cat-like_sf
IPR006676tRNA_splic
IPR006677tRNA_intron_Endonuc_cat-like
Homology
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: EWM29296.1 (hypothetical protein Naga_100029g15 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-11
Identity = 44/65 (67.69%), Postives = 46/65 (70.77%), Query Frame = 0 
Query:  291 MLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEG-GKGEERGMDENGLSWRDLHLLYRLIG 355
            MLYRGTPQRYHAEFGVLLRYP S+PP       R GEG G G  R      L+WRDLHLLYRLIG
Sbjct:    1 MLYRGTPQRYHAEFGVLLRYPSSSPP-----GHRDGEGAGDGGRR------LTWRDLHLLYRLIG 54
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: KFO37796.1 (tRNA-splicing endonuclease subunit Sen2 [Fukomys damarensis])

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9
Identity = 57/197 (28.93%), Postives = 86/197 (43.65%), Query Frame = 0 
Query:  243 KPRVLSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWYRGLSVYEVAVTPW----RAGTPLARLKMSKQKGNAAQVK 436
            K   L++++ WKAF    PTF  + G+Y YFR +G+V   GL  G DL+LYR  P  YHA + V++            L ++G  G             +W+ L  L R+ G V K L+L ++       KP      D E  E     +RR   +   G ++  ++  PW    R G P   +   K +   + VK
Sbjct:  381 KKEPLTIVKLWKAFTAIQPTFRTTYGAYHYFRSKGWVPKTGLKYGTDLLLYRKGPPFYHASYSVIV-----------ELVDKGFAGPL-------RRPFTWKSLATLSRVSGNVSKELMLCYL------IKPSTMTDEDMESPE----CLRRIKVQVTFGRNLTSLSKFPWTPRSRLGHPQGHILCEKPQTQPSAVK 549
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_020337883.1 (tRNA-splicing endonuclease subunit Sen2 isoform X1 [Oncorhynchus kisutch])

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV++ W+ FR+  P F  S  +Y YFR +G+V   G+  G DLMLYR  P  YHA + V++              ++ G GG            SWR L  L R+ G V K L+L +V
Sbjct:  337 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGADLMLYRKGPPFYHASYSVVV-----------EKVDQPGRGGA-------LRPFSWRSLAALSRITGNVSKDLMLCYV 437
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_020337885.1 (tRNA-splicing endonuclease subunit Sen2 isoform X2 [Oncorhynchus kisutch])

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV++ W+ FR+  P F  S  +Y YFR +G+V   G+  G DLMLYR  P  YHA + V++              ++ G GG            SWR L  L R+ G V K L+L +V
Sbjct:  336 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGADLMLYRKGPPFYHASYSVVV-----------EKVDQPGRGGA-------LRPFSWRSLAALSRITGNVSKDLMLCYV 436
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_021466518.1 (tRNA-splicing endonuclease subunit Sen2 [Oncorhynchus mykiss])

HSP 1 Score: 72.8 bits (177), Expect = 3.200e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV++ W+ FR+  P F  S  +Y YFR +G+V   G+  G DLMLYR  P  YHA + V++              ++ G GG            SWR L  L R+ G V K L+L +V
Sbjct:  477 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGADLMLYRKGPPFYHASYSVVV-----------EKVDQPGRGGA-------LRPFSWRSLAALSRITGNVSKDLMLCYV 577
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_024283938.1 (tRNA-splicing endonuclease subunit Sen2 isoform X1 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.4 bits (176), Expect = 4.200e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV++ W+ FR+  P F  S  +Y YFR +G+V   G+  G DLMLYR  P  YHA + V++              ++ G GG            SWR L  L R+ G V K L+L +V
Sbjct:  337 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGADLMLYRKGPPFYHASYSVVV-----------EKVDQPGRGGA-------LRPFSWRTLAALSRITGNVSKDLMLCYV 437
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_024283939.1 (tRNA-splicing endonuclease subunit Sen2 isoform X2 [Oncorhynchus tshawytscha])

HSP 1 Score: 72.4 bits (176), Expect = 4.200e-9
Identity = 43/119 (36.13%), Postives = 59/119 (49.58%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV++ W+ FR+  P F  S  +Y YFR +G+V   G+  G DLMLYR  P  YHA + V++              ++ G GG            SWR L  L R+ G V K L+L +V
Sbjct:  336 LSVLQLWEMFRSVQPHFETSYMAYHYFRSRGWVPKPGVKYGADLMLYRKGPPFYHASYSVVV-----------EKVDQPGRGGA-------LRPFSWRTLAALSRITGNVSKDLMLCYV 436
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_020515766.1 (tRNA-splicing endonuclease subunit Sen2, partial [Labrus bergylta])

HSP 1 Score: 72.0 bits (175), Expect = 5.500e-9
Identity = 40/117 (34.19%), Postives = 58/117 (49.57%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFV--VHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLI 362
            LS+++ W+ FR+  P F+ +  +Y++FR +G+V  V GG   G+DLMLYR  P  YHA + V++                  E    E RG      SWR L  L R+   V K L+
Sbjct:  165 LSILQLWRKFRSLRPNFISTYAAYQHFRSRGWVPKVGGGAKYGVDLMLYRKGPPFYHASYSVVI------------------ERADDEFRGSGPRPFSWRSLAALSRITSNVSKELM 263
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_010629832.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X2 [Fukomys damarensis])

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-9
Identity = 41/120 (34.17%), Postives = 59/120 (49.17%), Query Frame = 0 
Query:  243 KPRVLSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLIL 363
            K   L++++ WKAF    PTF  + G+Y YFR +G+V   GL  G DL+LYR  P  YHA + V++            L ++G  G             +W+ L  L R+ G V K L+L
Sbjct:  290 KKEPLTIVKLWKAFTAIQPTFRTTYGAYHYFRSKGWVPKTGLKYGTDLLLYRKGPPFYHASYSVIV-----------ELVDKGFAGPL-------RRPFTWKSLATLSRVSGNVSKELML 391
[Close]
BLAST of NO01G03340 vs. NCBI_GenBank
Match: XP_008406446.1 (PREDICTED: tRNA-splicing endonuclease subunit Sen2 isoform X1 [Poecilia reticulata])

HSP 1 Score: 71.2 bits (173), Expect = 9.300e-9
Identity = 45/121 (37.19%), Postives = 60/121 (49.59%), Query Frame = 0 
Query:  247 LSVMECWKAFRTASPTFVKSVGSYRYFREQGFVVH--GGLNLGLDLMLYRGTPQRYHAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLYRLIGEVRKTLILGHV 366
            LSV+E W+ FR+  P FV S  +Y +FR +G+V    GG   G+DLMLYR  P  YHA + V++              ER GE   G          SWR L  L R+   V K L+L ++
Sbjct:  259 LSVVELWRTFRSLRPDFVSSYAAYHHFRSRGWVPKGGGGAKYGVDLMLYRKGPPFYHASYSVVV--------------ERTGESLGGAAL----RPFSWRSLAALSRITASVSKELMLCYI 361
The following BLAST results are available for this feature:
BLAST of NO01G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29296.14.500e-1167.69hypothetical protein Naga_100029g15 [Nannochlorops... [more]
KFO37796.13.200e-928.93tRNA-splicing endonuclease subunit Sen2 [Fukomys d... [more]
XP_020337883.13.200e-936.13tRNA-splicing endonuclease subunit Sen2 isoform X1... [more]
XP_020337885.13.200e-936.13tRNA-splicing endonuclease subunit Sen2 isoform X2... [more]
XP_021466518.13.200e-936.13tRNA-splicing endonuclease subunit Sen2 [Oncorhync... [more]
XP_024283938.14.200e-936.13tRNA-splicing endonuclease subunit Sen2 isoform X1... [more]
XP_024283939.14.200e-936.13tRNA-splicing endonuclease subunit Sen2 isoform X2... [more]
XP_020515766.15.500e-934.19tRNA-splicing endonuclease subunit Sen2, partial [... [more]
XP_010629832.17.200e-934.17PREDICTED: tRNA-splicing endonuclease subunit Sen2... [more]
XP_008406446.19.300e-937.19PREDICTED: tRNA-splicing endonuclease subunit Sen2... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007984NSK007984Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03340.1NO01G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577021gene_334Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g15gene1361Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03340.1NO01G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03340 ID=NO01G03340|Name=NO01G03340|organism=Nannochloropsis oceanica|type=gene|length=2765bp
GACAAAACAAATGCCATTTGCTGTGAGGGGCGGATGTTGGAAGGAAGGGA
GGAAGAGTGGCGGGAGACACATAAGGCGGAGTGGCTTAACGTGTGATGAT
GATGATGATGATGGCGAAGCTTGACTGGCCGAAAGTTGGCACCAGATCCT
CCCAAGCTACAGCCGCCGCATGTATTTAAACCTCTCACGAGCCCTAGATG
GTGCAGAGTGTGTCCTGGCGTGTGTGGAGGTGGTGTTGAGTTGAGCAGCG
AAGCGACGAAATGCCGTCTCAGCGATTTGACAGCGATGGTGATGGCGTTG
ACTGTTGGGTTGCGGTCGTGCGGAGGCCAGGGCGGGTGTGGTACCGTAAA
TGCGGCGTTGAAGGATATTTCTCACGATGCTGCGTCGCTATGTGACTTGG
AGCTCTGCGTAATGTGTGACAGTGCCGAATTGAACCAGACACACACAGAA
GGCGAAGAAGCACAAGGAGGACTCAGAGAGCGCGAAGACAAACCTCCCGC
CAAGAGCTTGAGAGTTGTTTGCGTATCTCACCCACCCACCACCACAAACT
ATAGGCCTCATGGAGCCATTAGGACTTTCGGAGTCATTTGAGGAAGGGAC
AGGGGTTGTGACCGAATCCATGGAGGATTTGCCGGAGGGGGAAGAGCAAG
AGAATCAGGCTACGACATTGCCCACTCTCTTGAAGCCGCAGGAGAACGGG
GATGCTACTGATGCAGCCCAGGACCCGCATAATACCACCCTTGAGCCAGC
AGTAGTGCCTGCGACGAATATAACCGAACACAATGAGCCGGCTCCAGGTG
CCAGCGCTTCGCGAGCAGAGCATGACAGGAGTCCCATCCCTACAGCTGGT
ACCACCACCACTCCCCACACCCCTGCTACTCATACGGGCAAGCCACGCCC
CAATCTCCAAGGCACATTGATTGGACTTTTCGTCGCCATAGATCCTGTCA
CTCAAAGgtacgtgtatggaagagcaggggataggagggatgcatattag
accacagacatacgtatatatagatacaatttatcttcaacccccctcca
ttttcgtccttctacgcacgttcgacagGGGGAAAGTGAACGTCAAGCGT
GAGCTTGAGAACATGGGGATCTACCAACGCgtacgtattgttgtctcatt
atcgatcgttgctctcaagaatcgaccacaccaacctgaccggtaatcca
tccctacctttcctactttactcaccgcttcctccctcatatttattttc
ataagGACTTGGCCCCATGGGAAGAAGTTCAGCTTTCGCTCGAGCAGGCC
TTTTACCTTGTCGCAGATTTGAAGCGTCTTGAGGTGTATTTGCCCTCACC
ACCACCTCCGTTTCAGCAGCAGGAGGAAGAGGAGAAGGAGGTGGAATTGG
AGGAAGAAGGGCAGGAAGGGCACGTAACGGATCTGGCGGACGGAAAGGCA
GATGAGCAACAGCAGCAGCAACAACAACAACAGCAGAAAATTGAGGAGAT
GGCGGCGGAAAGTGAGCCACTGGATGGTGCAAAACCAAGGGTCTTGAGTG
TGATGGAGTGCTGGAAAGCgtacgtaatattttttaatgtccgacaagat
cccaagcttctctcctcaactgcatttctctctctcttttgttttcttct
cctctttgaagtatcttactaaacacatagccattctctaatttcctcca
atttcctctaacctatatccctcgcccattttctgatgcagGTTCCGCAC
TGCCAGCCCCACCTTCGTCAAAAGCGTGGGCAGTTACCGCTACTTCCGAG
AACAAGGgtaagtccggctggctgaagaaaagatgacgtccacatgagtc
aagatgcatgccataattagcgtgcattattaatcgcttgttgaatttcc
cccccaatttgaggggatggtattgaaagcgctctttactatccgctctt
gccgcccgctttcagcattcttattcatttattcgctccctgtctctctt
cctccctgccgccccgactctttctctctagCTTTGTCGTGCACGGTGGT
CTCAATCTTGGCTTGGATTTAATGCTATATCGTGGCACCCCTCAACGGTA
TCACGCCGAATTCGGAGTCCTCCTCCGCTATCCTCCCTCAGCCCCTCCTC
CCACGTCTTCTCTCACCGAGAGGGGAGGAGAGGGAGGAAAAGGAGAGGAG
AGGGGGATGGATGAGAATGGTTTGAGCTGGCGGGATCTTCATTTGCTGTA
TCGATTGATTGGGgtaagtggttgaaacaacgtgaaggtggagtatcctc
cttgtcgccctgctgttttgtgcgctccttttggcgcacacttttattat
ttgctgatgtgatgtactcattttccctccttccatctttccctccctct
ctttcctacagGAGGTGCGCAAGACGCTCATTCTCGGTCACGTCCGCCTG
GGGAATCTTGAAGAGAAGCCAGAGGAAAAAGCTGCAGTCGATAGGGAGGG
AGGGGAAGAAAGTGATGGAGAAATGCGACGAGAGATGCAGGAGTGGTACC
GTGGGCTGAGTGTTTATGAAGTGGCCGTCACACCATGGAGGGCAGGGACG
CCGTTAGCCCGTCTCAAGATGAGCAAGCAAAAGGGGAACGCTGCTCAGGT
TAAGAGGGGGGGAGGAGGGCAGGCTGGGGGGAAGAAACGAGGGAGGGGAG
GAGGGCAGGGAAGCGGAGCCGAGGAGGAGCACCCTAGCAAGAGACAGCAT
GTTTGACGCAATGAA
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protein sequence of NO01G03340.1

>NO01G03340.1-protein ID=NO01G03340.1-protein|Name=NO01G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MEPLGLSESFEEGTGVVTESMEDLPEGEEQENQATTLPTLLKPQENGDAT
DAAQDPHNTTLEPAVVPATNITEHNEPAPGASASRAEHDRSPIPTAGTTT
TPHTPATHTGKPRPNLQGTLIGLFVAIDPVTQRGKVNVKRELENMGIYQR
DLAPWEEVQLSLEQAFYLVADLKRLEVYLPSPPPPFQQQEEEEKEVELEE
EGQEGHVTDLADGKADEQQQQQQQQQQKIEEMAAESEPLDGAKPRVLSVM
ECWKAFRTASPTFVKSVGSYRYFREQGFVVHGGLNLGLDLMLYRGTPQRY
HAEFGVLLRYPPSAPPPTSSLTERGGEGGKGEERGMDENGLSWRDLHLLY
RLIGEVRKTLILGHVRLGNLEEKPEEKAAVDREGGEESDGEMRREMQEWY
RGLSVYEVAVTPWRAGTPLARLKMSKQKGNAAQVKRGGGGQAGGKKRGRG
GGQGSGAEEEHPSKRQHV*
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Synonyms
Publications