NO01G03320, NO01G03320 (gene) Nannochloropsis oceanica

Overview
NameNO01G03320
Unique NameNO01G03320
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1188
Alignment locationchr1:870594..871781 +

Link to JBrowse

Properties
Property NameValue
DescriptionUBA-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:870594..871781 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
Homology
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BLAST of NO01G03320 vs. NCBI_GenBank
Match: EWM29254.1 (UBA-like protein [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 7.100e-42
Identity = 94/138 (68.12%), Postives = 108/138 (78.26%), Query Frame = 0 
Query:    1 MAHYPTLTYSTFKVQANGLPPELRVLPPLDTALPPAHDFELEEKVVRDYADSQAAAEKLAAQEASRIATATPVEAAESVSSCITDGVDSLTL---DPEKKKKLSSMKEMTKGDEKTCISYLDSYSWDLQRAVQEYFTK 136
            MAHYPTL YSTFKV ANGLP +LRVLP LDT LPPAHDFELEEKVV+ Y DSQAAAE+L AQEAS + T    E   + +S IT G+  L+L   DPEKK K++ MKE+TK D+KTC+ YLDSYSWDLQRA QEYF+K
Sbjct:    1 MAHYPTLAYSTFKVDANGLPADLRVLPELDTTLPPAHDFELEEKVVKAYEDSQAAAERLVAQEASPVVTKPNGEDVSTPTSTITGGLGDLSLVAGDPEKKTKMARMKELTKADDKTCLFYLDSYSWDLQRACQEYFSK 138
The following BLAST results are available for this feature:
BLAST of NO01G03320 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29254.17.100e-4268.12UBA-like protein [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007986NSK007986Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03320.1NO01G03320.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G03320.2NO01G03320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100029g13gene1363Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03320.1NO01G03320.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G03320.2NO01G03320.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03320 ID=NO01G03320|Name=NO01G03320|organism=Nannochloropsis oceanica|type=gene|length=1188bp
AGGTCAACATTTCTTAGGTGCTTGCTTGTGGAAGAGGCTAGTGTTGCTTG
CACCGTTTGGTCGATTCCAAAAAAGAAGCTCTGTTGGCAGCATTACCGTC
AGCCGCTTCCTCCCGCCTCCAGCCCTCCCTTAAACAATATGGCGCACTAC
CCAACATTAACGTACTCTACCTTCAAAGTGCAAGCAAATGGTCTGCCTCC
GGAGCTCCGGGTGTTGCCGCCGCTAGATgtgagtacacgagggagggagg
atgcaaatcgcttttttctggagtgcttgagccgatgaagcgttgtatct
tgtccagcttacggtaacagaagcaggcggtgtatggttgcatttgttta
ggggatcgatactattctgctatttgcggactctggggccccgatctttc
ctgcagtatcggctgccgcctcttgtcctgcttatcattcacactcccac
ccactgcattctgtacagACTGCACTGCCGCCTGCCCACGACTTTGAGCT
AGAGGAAAAGgtgcgtttacctaagcggatgggcttctatatgaggtgtg
gcatcgatctagatgtggctgcacgtcttttctctccgtaaaactctcac
tgacaaactatgtcacagGTAGTAAGGGACTACGCGGACTCCCAAGCCGC
CGCCGAGAAGCTGGCCGCCCAAGAAGCATCACGTATTGCCACgtacgttt
ttttcctgcacagattttcttcgttctttctcacaaaggcccacccttca
ctgagcttcaatccaacacgcacatctacacaaatatagCGCAACGCCTG
TCGAGGCTGCCGAGTCAGTATCGTCCTGTATTACGgtacgcatacatctc
attgcaatagtattcttctcatttacttatgcttgtctgtcccaatacct
tctggaaatacattcacacaaaatagGATGGAGTGGACAGTCTGACTTTG
GACCCGGAGAAGAAGAAGAAGCTGAGCAGCATGAAAGAGATGACCAAGGG
TGACGAAAAAACGTGCATATCTTACCTTGATTCCTACTCATGGGACCTGC
AGCGGGCGGTTCAAGAATATTTCACAAAATAAATTAACCTCCCCACCCCT
ACTGGGCTTGACCGACATGGTGACAGGAAAAGGAGTACAAATAATGCAAT
GTATACACCAAAAACCCAAGAAACTGAAGTTCCCAAAT
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protein sequence of NO01G03320.1

>NO01G03320.1-protein ID=NO01G03320.1-protein|Name=NO01G03320.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MAHYPTLTYSTFKVQANGLPPELRVLPPLDTALPPAHDFELEEKVVRDYA
DSQAAAEKLAAQEASRIATATPVEAAESVSSCITDGVDSLTLDPEKKKKL
SSMKEMTKGDEKTCISYLDSYSWDLQRAVQEYFTK*
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protein sequence of NO01G03320.2

>NO01G03320.2-protein ID=NO01G03320.2-protein|Name=NO01G03320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MAHYPTLTYSTFKVQANGLPPELRVLPPLDTALPPAHDFELEEKVVRDYA
DSQAAAEKLAAQEASRIATYVFFLHRFSSFFLTKAHPSLSFNPTRTSTQI
*
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Synonyms
Publications