NO01G03190, NO01G03190 (gene) Nannochloropsis oceanica

Overview
NameNO01G03190
Unique NameNO01G03190
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1087
Alignment locationchr1:841127..842213 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:841127..842213 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G03190 vs. NCBI_GenBank
Match: EWM29235.1 (hypothetical protein Naga_100119g1 [Nannochloropsis gaditana])

HSP 1 Score: 88.6 bits (218), Expect = 2.500e-14
Identity = 45/82 (54.88%), Postives = 65/82 (79.27%), Query Frame = 0 
Query:    1 MGNLNQSLRDRYMASFDNVVEDMSIAQKLEVYQGLQQQASLLTQMEGQIMKSLESSAIEEASLREREDFLERRRLAYMKRID 83
            MGN++QSLR+RY  +F++ V++MSIAQK E+++ LQ QA LL Q+E +I++ L   + EEA+LR RE+FLE RR AY+KR+D
Sbjct:    1 MGNVSQSLRERYRTTFEDAVDEMSIAQKKEMHRDLQHQALLLLQLESEILRILRKLSEEEANLRRREEFLELRRRAYVKRLD 82
[Close]
BLAST of NO01G03190 vs. NCBI_GenBank
Match: EWM29251.1 (hypothetical protein Naga_100029g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 0 
Query:  122 SIAVLDGPSEQKKKEIKTFLEQELPEIQKNVAVRARMLWFKQKEYEDKLVKTRNKLMEVNGLIADMEPGLP 193
            +I V+D   E+K++E+ +FL++ELP+IQ+ VA+ A+ LWFK++ Y+D+L  TR KL EV  LI  +E G+P
Sbjct:   34 TITVVDASREEKEQELMSFLQEELPQIQREVALSAQSLWFKREGYQDQLADTRKKLSEVKTLIEGLECGMP 104
The following BLAST results are available for this feature:
BLAST of NO01G03190 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29235.12.500e-1454.88hypothetical protein Naga_100119g1 [Nannochloropsi... [more]
EWM29251.11.100e-947.89hypothetical protein Naga_100029g1, partial [Nanno... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008003NSK008003Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03190.1NO01G03190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576952gene_320Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100029g1gene1375Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03190.1NO01G03190.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03190 ID=NO01G03190|Name=NO01G03190|organism=Nannochloropsis oceanica|type=gene|length=1087bp
AAACATGACAAGTACCTCGCAGGCAGCCAGAAGATAGCTGTGGGTGTGGC
GGCCAATGGGGAATCTGAATCAGAGCTTGCGGGATAGgtaagaaaaaggt
ggaggactgaggcctgtgatcatcaaacccaccctactcttccttccctc
gcacttacggtatggcggtcagGTACATGGCTAGCTTTGACAACGTAGTG
GAGGACATGTCCATTGCCCAGAAGTTGGAGGTGTACCAGGGGCTGCAGCA
ACAGgtgagcacgaacacccgactcctgactaccccccttatcctccatc
cctacgcgtctcaatcctccttttcatgtttttatcatctagGCCTCGTT
GCTGACTCAGATGGAGGGTCAGATCATGAAGTCGCTTGAATCCTCTGCCA
TTGAAGAAGCCAGCCTTCGTGAACGCGAGgtaggataggtggagagatcg
cagggcgaagaaccgaaaggacaggaaatgtaaatttgtccatgtctcct
ttttctctccatttccatcagccttgaccttgtatcccacgctaatggcg
catttggatccacaccattctcatacgctcagGACTTTTTAGAACGGCGC
CGTCTAGCCTACATGAAGCGCATCGATCCCTTCTCCCACCCCGAGGAGGA
CGACGATGACAACGACGACGAGAAAGTAGAGGAGTACGAATGCGAAAAGT
TAAATGAAGATGAGAACCGAAGCCTACAGCTTCAGTCCGTGGTGTCTATC
GCCGTGCTAGACGGGCCGAGCGAGCAGAAGAAGAAAGAAATTAAAACTTT
CCTCGAGCAAGAGCTCCCAGAGATCCAGAAAAATGTGGCGGTACGCGCAC
GGATGCTGTGGTTCAAGCAGAAGGAGTACGAAGATAAGCTGGTAAAGACG
CGGAATAAACTGATGGAGGTAAATGGTTTGATTGCTGATATGGAGCCTGG
TCTTCCGCCCATGAGCTTGACCCCAGAGACGGGAATAACTCTTCTTCCAA
GCATGTAAAAACATATTTGACAAGTGTGCGTCTCAAGACGGCGCATGCGA
AAAAAGGAAGAAATGCCAGACTGAGAAGTTGTAAATG
back to top

protein sequence of NO01G03190.1

>NO01G03190.1-protein ID=NO01G03190.1-protein|Name=NO01G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MGNLNQSLRDRYMASFDNVVEDMSIAQKLEVYQGLQQQASLLTQMEGQIM
KSLESSAIEEASLREREDFLERRRLAYMKRIDPFSHPEEDDDDNDDEKVE
EYECEKLNEDENRSLQLQSVVSIAVLDGPSEQKKKEIKTFLEQELPEIQK
NVAVRARMLWFKQKEYEDKLVKTRNKLMEVNGLIADMEPGLPPMSLTPET
GITLLPSM*
back to top
Synonyms
Publications