NO01G03180, NO01G03180 (gene) Nannochloropsis oceanica

Overview
NameNO01G03180
Unique NameNO01G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2631
Alignment locationchr1:838319..840949 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:838319..840949 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO01G03180 vs. NCBI_GenBank
Match: EWM29248.1 (hypothetical protein Naga_100119g2 [Nannochloropsis gaditana])

HSP 1 Score: 317.4 bits (812), Expect = 5.800e-83
Identity = 197/354 (55.65%), Postives = 223/354 (62.99%), Query Frame = 0 
Query:   18 VIDAGAVEGMMVDETRMRGRRSTAR------PSLVLLLFVFTLLMGMARAGMDSRSSLAEQSPFQVLGEWLDRSDDSALKGAGSRDIERAFKVVASSQAALKTMDGAAHGLYAYSHSRAPVKAWTRLEYSRATKAEKESRLKAFRKAKLLEEAVYSSELAELVSDGVSKEESLAMVKDLQIKHEVLLEDFT----GDFRFILLVDRESKRLTLSVGDSVQWAEKLDIIRAHPLTVPLRSRGLLRRSMNVNPRLWKAAGAVPAPRRGMVKKKGGREGGERGASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMRDKVTAFVFAPPPCVSKNIRGLRRFTTSFVLG 362
            + DA  + G      R RGR S+ R       SLV +     L++  A A + S     + SPFQ+L EWLDRS DS LKGAG  +IERAFKVVASSQ ALKTMDGAAH LYAYSH R PV AW+RLEYSRA+KAEKE RLKAFRKAKLLEEAVYSSELAEL +DGV + E+L MV +LQ   EVL EDF     G FRF+LLVDR+S+RLTLSVGDS+ WA++LD++RA PLTVPLR RGLLRRSM VNPRLW AA  V   R   V     RE                                                D VTAFVFAP PC+SKNIRGLRRFTTSF+LG
Sbjct:   67 ITDAEGLGGR--SSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGA-VSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTV-IERVKAVLTTALRE-----------------------------TCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILG 387
[Close]
BLAST of NO01G03180 vs. NCBI_GenBank
Match: XP_005853760.1 (hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526] >EKU22601.1 hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 311.2 bits (796), Expect = 4.200e-81
Identity = 226/407 (55.53%), Postives = 255/407 (62.65%), Query Frame = 0 
Query:   18 VIDAGAVEGMMVDETRMRGRRSTAR------PSLVLLLFVFTLLMGMARAGMDSRSSLAEQSPFQVLGEWLDRSDDSALKGAGSRDIERAFKVVASSQAALKTMDGAAHGLYAYSHSRAPVKAWTRLEYSRATKAEKESRLKAFRKAKLLEEAVYSSELAELVSDGVSKEESLAMVKDLQIKHEVLLEDFT----GDFRFILLVDRESKRLTLSVGDSVQWAEKLDIIRAHPLTVPLRSRGLLRRSMNVNPRLWKAA--------------------------------------------------GAVPAP--RRGMVKK-KGGREGGERGASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMRDKVTAFVFAPPPCVSKNIRGLRRFTTSFVLG 362
            + DA  + G      R RGR S+ R       SLV +     L++  A A + S     + SPFQ+L EWLDRS DS LKGAG  +IERAFKVVASSQ ALKTMDGAAH LYAYSH R PV AW+RLEYSRA+KAEKE RLKAFRKAKLLEEAVYSSELAEL +DGV + E+L MV +LQ   EVL EDF     G FRF+LLVDR+S+RLTLSVGDS+ WA++LD++RA  LTVPLR RGLLRRSM VNPRLW AA                                                  GAVPAP  RR   ++ +G R G       XXXXXXXXXXXXXXXXXXXXXXX              L  D VTAFVFAP PC+SKNIRGLRRFTTSF+LG
Sbjct:   24 ITDAEGLGGR--SSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGA-VSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSVGALVAGVLDGSIFVEGAVPAPPTRRSHTRRGRGARAGVAVPDEXXXXXXXXXXXXXXXXXXXXXXXXPTSSWPQALRGATGLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILG 427
The following BLAST results are available for this feature:
BLAST of NO01G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29248.15.800e-8355.65hypothetical protein Naga_100119g2 [Nannochloropsi... [more]
XP_005853760.14.200e-8155.53hypothetical protein NGA_0477710 [Nannochloropsis ... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008004NSK008004Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03180.1NO01G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|657741gene_319Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100119g2gene1377Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03180.1NO01G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03180 ID=NO01G03180|Name=NO01G03180|organism=Nannochloropsis oceanica|type=gene|length=2631bp
ATGGGTGGGAGGGAAGCCGCGGACGAGGCGGGGGAACATGTGCCTTTTCC
TGTCATCGATGCGGGAGCAGTCGAGGGTATGATGGTTGATGAGACGAGGA
TGAGGGGGAGGAGGTCGACAGCGCGGCCATCATTGGTCTTGCTACTGTTT
GTTTTCACCTTGCTGATGGGCATGGCGAGGGCAGGCATGGATTCAAGGTC
TTCTTTGGCGGAGCAGAGCCCTTTTCAAGTCCTGGGGGAATGGCTGGACC
GCAGCGACGACTCGGCCCTCAAGGGCGCCGGCTCCCGGGACATCGAGCGT
GCTTTCAAGgtacgagataaggagagctggcgtgactttcattgagtaag
cttgcaggtgcattgttggaccttgcacacacgattatgcaacatgtatc
actcatccattttcacacatttctccatctcaccctcccttcatagGTGG
TCGCCTCCTCCCAAGCGGCCCTCAAAACCATGGATGGCGCCGCGCACGGT
CTCTATGCCTACAGTCACTCCCGCGCCCCCGTCAAAGCCTGGACCCGGCT
TGAATATAGCCGGGCGACAAAAGCAGAGAAAGAGTCCCGGTTAAAGGCAT
TCCGAAAAGCGAAGCTACTGGAAGAAGCGGTGTATAGCTCGGAGCTTGCC
GAATTGGTCTCTGATGGGGTCAGCAAGGAAGAGAGTCTTGCCATGGTGAA
GGACTTACAAATCAAACATGAGGTGCTTCTGGAGGATTTCACGGGCGATT
TTCGGTTCATTTTGCTCGTGGACCGAGAGAGTAAACGGCTGACTCTCTCT
GTAGGGGACTCGGTTCAGTGGGCTGAGAAATTAGATATAATAAGAGCGCA
TCCCCTGACTGTACCATTGAGGTCGCGTGGGTTGTTGAGAAGGTCAATGA
ATGTCAATCCTCGCCTGTGGAAGGCAGCGgtgagaattgtggagaaaatc
cgaccagttttagctgcagagccaggaaataagaagggggaggaggatgg
gaaggacgtggagggggggggaagggaggaaaggaaaaggaaacttatgc
ggggtatgatttgcatgttgttggcttttcactcggggggggttaggggc
attagtgggggggatactggacggtgcgattgccgtacagGGAGCCGTGC
CTGCCCCACGCCGGGGGATGGTGAAGAAGAAGGGAGGGAGGGAAGGAGGA
GAAAGAGGGGCAAGTGGGGCACCGGGAGTGACGGTGGGAGAGGAGGGAGA
GGTTACCTCAACAGGGGCGACAGAGGGGGGGGAGGGAGGAGGAAAAGGTG
GACCACGGGTCTCGCAGGGAACTACGGGACTGgtaaggagcgcatgggag
gcttctgcgtgtttctcttcctcacattcttctttctcccctgattttac
attttacccattttcctcctaatcccttccccctcaatcaagATGCGCGA
CAAAGTGACGGCCTTTGTCTTTGCCCCGCCGCCTTGTGTCTCTAAAAATA
TCCGAGGCCTCCGCCGATTCACCACTTCGTTTGTGCTGGGTACGTTAAAA
TGAATTGACGTCAACCAATTTGTTGACACCCATATGTGTGTGCGTGTGTC
TGTTTGTGGTAACGATGTCTCTTCCTTGGCTTTGTTCGCCTGGATGGCTA
CTCACTATCCCATTTCCTTATGCTGTTTCTCGTCCCTCTCTCTTCCCATT
CCTGCCCATAAGGCGACGATATGGTCCCTCGCGCAACGGCTGCTTCTTTG
AGCCGTCTCGAAAATCGCCTCCTGGACTACGTCTCGGACGGTGGAGGCGG
AGGTATCTACTTTGATTATGCCAGgtaagacaaaaagggtgatgaaatgc
aaagagggagagagggaaggagaaaggggacgtgaaagtgagtgaaagcg
gaggctttcctggttgtgcaaattgactcgagcggtgaaaatggaataaa
actgacactcacaagctctcttcccttttctcgtctttcttaccacaata
gGAGTTGGATGAGAGGGGTGGTGGGTGCAACGCTCCAGCAGGTGGTGACG
CATCAGATGACCAAGAAGGAGGAGGAGGAAGAGGAAGAGGGGGCGCTGAC
GCTGCCTGGACGGGTGTACTACATCAAGCCACGGAAGCTGCATGGAGGAG
CGACGATCAAAGAGgtacgttaaaagatgatattttcgtatgcaagattc
ggaaatagactcacaattataattttattgtcggtctttcggtcgatgcc
ggtctcagatttttcattctcatttaccgtgttttttcctcatctagGTC
ATGCGCGGCAACCTCCGCGAGGACGTCCTGTGGCAGATCCAAGACATTTT
CGTCTCCAAAAGCATGCTCAAGCATCATTCTCTTGACAAGTACATCACGG
TCTTGGCGAGAATACCTGTGGAATGATGAGCAGGGAACGCACATGCACAC
ATACACACGTGCGAGAATTCACAGGGGTATGATGTGGGAGAGGAGTGAGT
CGAGGCAGGGAAAGTGTCTGCTTGCTTGTGTACATACGACTTGAATAGAG
ACAAGACACTTTAAGCATTGAAAAATTAATAAAAAGAACAGACTCGCCAT
AATGAAGGAAGGCATTTACTAACGTAGGGCG
back to top

protein sequence of NO01G03180.1

>NO01G03180.1-protein ID=NO01G03180.1-protein|Name=NO01G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MGGREAADEAGEHVPFPVIDAGAVEGMMVDETRMRGRRSTARPSLVLLLF
VFTLLMGMARAGMDSRSSLAEQSPFQVLGEWLDRSDDSALKGAGSRDIER
AFKVVASSQAALKTMDGAAHGLYAYSHSRAPVKAWTRLEYSRATKAEKES
RLKAFRKAKLLEEAVYSSELAELVSDGVSKEESLAMVKDLQIKHEVLLED
FTGDFRFILLVDRESKRLTLSVGDSVQWAEKLDIIRAHPLTVPLRSRGLL
RRSMNVNPRLWKAAGAVPAPRRGMVKKKGGREGGERGASGAPGVTVGEEG
EVTSTGATEGGEGGGKGGPRVSQGTTGLMRDKVTAFVFAPPPCVSKNIRG
LRRFTTSFVLGTLK*
back to top
Synonyms
Publications