NO01G03110, NO01G03110 (gene) Nannochloropsis oceanica

Overview
NameNO01G03110
Unique NameNO01G03110
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2266
Alignment locationchr1:819718..821983 -

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Properties
Property NameValue
DescriptionSerine hydroxymethyltransferase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:819718..821983 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015424PyrdxlP-dep_Trfase
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009058biosynthetic process
Homology
BLAST of NO01G03110 vs. NCBI_GenBank
Match: EWM29233.1 (serine hydroxymethyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 837.4 bits (2162), Expect = 2.400e-239
Identity = 426/528 (80.68%), Postives = 461/528 (87.31%), Query Frame = 0
Query:    1 MSRASQRRQLPVLGLVAGCFISFASAFAVPPSYWAPLSSSVAAPAEVTSTTTASQCPLPTPQSARSYNNIPPTNAASVSXXXXXXXXXXXXXAQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFPS 529
            M R  +R QL +LGL+  C+ S A+AFAVPP YW PLS SVAA AE+ + +T SQC      S  ++     T AASV              A ED EVA +IQAER RQISGIELIASENFASKAVLEALGS+MTNKYSEGRPGARYYGGN++VDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGL+DY+ELQKLA LFRPRLIVAGGSAYPRDWDYARLR IADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFF+KELAE +HFAVFPSLQGGPHNHQIAALAVALKEA+ PSFRQ+YIW+VKRNAEALAM LQ LGH +VTNGTENHLLLWD+RPHGITGSKVEKLLEA+ ISVNKNTIHGDKSAS+PGGVRVGTPAMTTRGLTE DF+ VAAFLD+GLRLALK+QAG+ SKKLVDFE+ M AH  EV ALR+RV+ FA+ + FPS
Sbjct:    1 MERGGRRWQLAILGLMGWCWNSCAAAFAVPPCYWPPLSLSVAAAAELAAPSTQSQCRASPHGSRLAHAQKSSTVAASV----LSGHEAPSILADEDPEVAHIIQAERIRQISGIELIASENFASKAVLEALGSVMTNKYSEGRPGARYYGGNEHVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLEPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLVDYDELQKLASLFRPRLIVAGGSAYPRDWDYARLRAIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFRKELAEQVHFAVFPSLQGGPHNHQIAALAVALKEAAAPSFRQDYIWRVKRNAEALAMELQRLGHSVVTNGTENHLLLWDMRPHGITGSKVEKLLEAVGISVNKNTIHGDKSASSPGGVRVGTPAMTTRGLTERDFLHVAAFLDDGLRLALKVQAGADSKKLVDFERAMQAHEQEVRALRDRVQHFASNFSFPS 524          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_005773799.1 (hypothetical protein EMIHUDRAFT_424674 [Emiliania huxleyi CCMP1516] >EOD21370.1 hypothetical protein EMIHUDRAFT_424674 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 593.6 bits (1529), Expect = 6.100e-166
Identity = 297/436 (68.12%), Postives = 351/436 (80.50%), Query Frame = 0
Query:   94 QEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDM--AHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            +ED  V  LI+AE +RQ  G+ELIASENFAS AV EALGS+MTNKYSEG PGARYYGGN++VDALERLC+ARAL LF L  + WGVNVQPYSGSPANFA +TALL+PHDRIMGLDLPSGGHLTHGYYNE+RRVSATSIYFESLPY V   TGLIDY+ L++ A LFRP+L++AG SAYPRDWDYAR+R IAD+ GA LM DM  AHISGLV+A    +PF + DVVTSTTHKSLRGPR+G+IF++K    A++FAVFP LQGGPHNHQIAALAVAL+EA  P+FR EYI +VK NA+ALA  L + G+ IVT GT+NHL+LWD+RP  +TGSK+EKL EA+ I++NKN + GD SA+ PGGVR+GTPA+TTRG  E DFV+VA +L E + LAL +Q  S + KL DF   M A    V  LRERV AFAT++P P
Sbjct:   49 REDGAVWELIEAEGRRQRDGLELIASENFASAAVREALGSVMTNKYSEGLPGARYYGGNEHVDALERLCQARALELFGLDPDEWGVNVQPYSGSPANFAAFTALLEPHDRIMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVSAETGLIDYDGLEERARLFRPKLLIAGASAYPRDWDYARMRRIADSVGALLMNDMAHAHISGLVAAEQAADPFEHCDVVTSTTHKSLRGPRAGVIFYRKRFESAVNFAVFPCLQGGPHNHQIAALAVALREAQQPAFR-EYIRRVKANAKALAAALVARGYTIVTGGTDNHLVLWDLRPQRLTGSKLEKLAEAVGITLNKNAVRGDVSAATPGGVRIGTPALTTRGFGEADFVRVAEYLHEAVELALALQQRSGT-KLKDFVAEMEAEPA-VADLRERVRAFATEFPMP 481          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_005792856.1 (serine hydroxymethyltransferase [Emiliania huxleyi CCMP1516] >EOD40427.1 serine hydroxymethyltransferase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 593.6 bits (1529), Expect = 6.100e-166
Identity = 297/436 (68.12%), Postives = 351/436 (80.50%), Query Frame = 0
Query:   94 QEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDM--AHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            +ED  V  LI+AE +RQ  G+ELIASENFAS AV EALGS+MTNKYSEG PGARYYGGN++VDALERLC+ARAL LF L  + WGVNVQPYSGSPANFA +TALL+PHDRIMGLDLPSGGHLTHGYYNE+RRVSATSIYFESLPY V   TGLIDY+ L++ A LFRP+L++AG SAYPRDWDYAR+R IAD+ GA LM DM  AHISGLV+A    +PF + DVVTSTTHKSLRGPR+G+IF++K    A++FAVFP LQGGPHNHQIAALAVAL+EA  P+FR EYI +VK NA+ALA  L + G+ IVT GT+NHL+LWD+RP  +TGSK+EKL EA+ I++NKN + GD SA+ PGGVR+GTPA+TTRG  E DFV+VA +L E + LAL +Q  S + KL DF   M A    V  LRERV AFAT++P P
Sbjct:   49 REDGTVWELIEAEGRRQRDGLELIASENFASAAVREALGSVMTNKYSEGLPGARYYGGNEHVDALERLCQARALELFGLDPDEWGVNVQPYSGSPANFAAFTALLEPHDRIMGLDLPSGGHLTHGYYNERRRVSATSIYFESLPYEVSAETGLIDYDGLEERARLFRPKLLIAGASAYPRDWDYARMRRIADSVGALLMNDMAHAHISGLVAAEQAADPFEHCDVVTSTTHKSLRGPRAGVIFYRKRFESAVNFAVFPCLQGGPHNHQIAALAVALREAQQPAFR-EYIRRVKANAKALAAALVARGYTIVTGGTDNHLVLWDLRPQRLTGSKLEKLAEAVGITLNKNAVRGDVSAATPGGVRIGTPALTTRGFGEADFVRVAEYLHEAVELALALQQRSGT-KLKDFVAEMEAEPA-VADLRERVRAFATEFPMP 481          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: KOO25971.1 (serine hydroxymethyltransferase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 584.3 bits (1505), Expect = 3.700e-163
Identity = 289/435 (66.44%), Postives = 348/435 (80.00%), Query Frame = 0
Query:   93 AQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            +++D EV +LI+ E  RQ  G+ELIASENF S AV EALGS +TNKYSEG PGARYYGGN+++DA+ERLC+ RAL L+ LS + WGVNVQPYSGSPANFA YTALLQPHDRIMGLDLPSGGHLTHGYY+ K+++SATSIYFESLPY VD  TGL+DY+ L+  A LFRP+LI+AG SAYPRDWDY R+R+IAD  GAYL+ DMAHISGL +A  C+NPF ++DVVTSTTHKSLRGPR+G+IF++K+   A++ AVFP+LQGGPHNHQI ALAVAL+EA+ P F  +YI  VK NA+ALA  L S G+ IVT GT+NHL+LWD+RP G+TGSK+EKL EA+ IS+NKN + GD SA  PGGVRVGTPAMTTRGL E DF  VA  L    +L+L++QA  S  KL DF   +   A EV ALRERV  FA+++P P
Sbjct:   39 SKQDPEVCSLIEKEAARQRDGLELIASENFVSPAVREALGSCLTNKYSEGLPGARYYGGNEHIDAIERLCQKRALDLYGLSPDEWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHLTHGYYSPKKKISATSIYFESLPYEVDATTGLVDYDGLEARARLFRPKLIIAGASAYPRDWDYGRMRQIADEVGAYLLNDMAHISGLAAARECHNPFEHADVVTSTTHKSLRGPRAGVIFYRKKFEAAVNGAVFPALQGGPHNHQIGALAVALREAAAPEF-GDYIRSVKANAKALARKLVSHGYEIVTGGTDNHLVLWDLRPLGLTGSKLEKLCEAVHISLNKNAVRGDTSALTPGGVRVGTPAMTTRGLNEADFEVVADHLHAAAQLSLQLQA-LSGPKLADFVHEIEGSA-EVRALRERVTEFASKFPMP 470          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: CBN76138.1 (serine hydroxymethyltransferase 2 [Ectocarpus siliculosus])

HSP 1 Score: 581.3 bits (1497), Expect = 3.100e-162
Identity = 301/466 (64.59%), Postives = 357/466 (76.61%), Query Frame = 0
Query:   93 AQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKR----------------------------RVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKE--LAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVK-VAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            ++ D EV  +I AER+RQ+  IELIASENFAS AVLEALGSIMTNKYSEG PG RYYGGN+ VD +E LC+ RALSLF L    W VNVQPYSGSPANFAVYTALL+PHDRIMGLDLPSGGHLTHGYY++KR                            +VSATSIYFESLPY+VD  TGLIDYE L++ A LFRP+LI+AG SAY R+WDYAR+R+IAD  GAYLMTDMAHISGLV+AG  N+PFP+S VVTSTTHKSLRGPRSG+IF ++   + + + FAVFP+LQGGPHNHQIAALA ALKEA++P F+  YI +VK NA+ALA GL++ GH + T+GT+NHLLLWD+RP G+TGSK+EKLLEA +IS NKNT++GDKSA++PGGVR+GTPAMTTRGL E DF + VA FLD    LA  +Q  + SKKL  F   M A  G V  L+  VEAFA ++ +P
Sbjct:   67 SETDPEVWEIITAERRRQVCSIELIASENFASVAVLEALGSIMTNKYSEGLPGKRYYGGNEQVDRMETLCQDRALSLFGLDPAEWAVNVQPYSGSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGYYSDKRKERLAIGDRSCGNNAPSSRGRVVNGLTAKVSATSIYFESLPYQVDQETGLIDYEGLERQARLFRPKLIIAGASAYSREWDYARMRKIADEVGAYLMTDMAHISGLVAAGEANDPFPHSHVVTSTTHKSLRGPRSGLIFSRRNEGINDLVDFAVFPALQGGPHNHQIAALAAALKEAASPDFK-SYIKKVKTNAKALAAGLRARGHEVATDGTDNHLLLWDLRPRGLTGSKMEKLLEACSISANKNTLYGDKSAASPGGVRLGTPAMTTRGLDETDFRETVAGFLDRAACLACAVQERAGSKKLTAFVTEMDADEG-VRELKGEVEAFAERFYYP 530          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_005536271.1 (serine hydroxymethyltransferase [Cyanidioschyzon merolae strain 10D] >BAM79985.1 serine hydroxymethyltransferase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 576.2 bits (1484), Expect = 1.000e-160
Identity = 288/443 (65.01%), Postives = 345/443 (77.88%), Query Frame = 0
Query:   96 DAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKK-----------ELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            D EV  +++ E++RQ  G+ELIASENF S AV+EALGS  TNKYSEG PG RYYGGN Y+D +ERLC+ RAL+ F+LS   WGVNVQPYSGSPANFAVYTALL PHDRIMGLDLPSGGHLTHG+Y  K+RVSATSIYFESLPYRV+  TG IDY+ L+K A LFRP+L++AGGSAY R+WDYAR R+IAD  GAYL+ DMAHISGLV+ G   +PFPY+DVVT+TTHKSLRGPR+GMIF+++           +L + I  AVFP+LQGGPHNHQIAALAV L+E  TP+FR  Y  Q++RNA+ALA  L   G+ +VT GTENHL+LWD+RP GITGSK+EKL E ++I++NKN + GD SA  PGGVR+GTPA+TTRG  E DF KVA FLD  +R+AL+IQ   S KKL DF   M+    EV ALRE VE FA+ +P P
Sbjct:   83 DPEVYQILEKEKERQRRGLELIASENFTSAAVMEALGSAFTNKYSEGYPGRRYYGGNMYIDEVERLCQERALAAFSLSPTDWGVNVQPYSGSPANFAVYTALLNPHDRIMGLDLPSGGHLTHGFYTAKKRVSATSIYFESLPYRVNETTGYIDYDALEKQAALFRPKLLIAGGSAYAREWDYARFRQIADQSGAYLLVDMAHISGLVATGEAQSPFPYADVVTTTTHKSLRGPRAGMIFYRRSALAEIAPRGADLEQRIQEAVFPALQGGPHNHQIAALAVQLREVQTPAFR-AYAKQIRRNAQALARRLVQHGYDLVTGGTENHLVLWDLRPIGITGSKMEKLCEYVSITLNKNAVPGDTSALNPGGVRIGTPALTTRGFREADFEKVADFLDSCVRIALRIQE-QSGKKLNDF-VAMLPDDPEVQALRESVERFASTFPMP 522          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_005789291.1 (serine hydroxymethyltransferase [Emiliania huxleyi CCMP1516] >XP_023280119.1 serine hydroxymethyltransferase 4-like [Seriola lalandi dorsalis] >EOD36862.1 serine hydroxymethyltransferase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 575.1 bits (1481), Expect = 2.200e-160
Identity = 282/446 (63.23%), Postives = 347/446 (77.80%), Query Frame = 0
Query:   96 DAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKK------------ELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTM--VAHAGEVVALRERVEAFATQYPFP 528
            D EV   +  E+KRQ++GIELIASENF SKAV+E LGS MTNKYSEG PGARYYGGN+ +D +E LC +RAL+ FN     WGVNVQPYSGSPANFAVYTALL PHDR+MGLDLPSGGHLTHGYY  K+++SATSIYFESLPY VD  TGLIDY+ L+K A++FRP++I+AG SAYPRDWDYAR+R+I D  GA+L+ DMAHISGLV+ G   +PF Y+DVVT+TTHKSLRGPR+GMIFF++            E  +AI+FAVFP+LQGGPHNHQIAALA  LKE +TP F+  Y  QV+ NA+ALA  L + G+ + TNGTENHL+L D+RP G+TG+K+EK+LE + I++NKN +HGD SA APGG+R+GTPAMTTRGL E DFVKV  FL  G++ AL++Q  +S KKL DF K +   A+A ++  +   VEAFA  +P P
Sbjct:   13 DPEVYRFLLEEKKRQVNGIELIASENFTSKAVMECLGSCMTNKYSEGMPGARYYGGNQIIDQVENLCRSRALAAFNCDPAKWGVNVQPYSGSPANFAVYTALLTPHDRVMGLDLPSGGHLTHGYYTAKKKISATSIYFESLPYHVDSQTGLIDYDHLEKTAMVFRPKMIIAGASAYPRDWDYARMRDICDKTGAFLLVDMAHISGLVATGEQKSPFDYADVVTTTTHKSLRGPRAGMIFFRRGPKSDAENAPHYEYEDAINFAVFPALQGGPHNHQIAALATQLKEVATPEFKL-YAKQVRANAKALADYLVAQGYKLATNGTENHLMLLDLRPLGLTGNKMEKVLEHMHITLNKNAVHGDVSAMAPGGIRIGTPAMTTRGLKEADFVKVGEFLHRGIQFALEVQK-ASGKKLADFLKAIDEKANADKLAGMCSEVEAFAGAFPMP 456          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_005706998.1 (glycine/serine hydroxymethyltransferase [Galdieria sulphuraria] >EME30478.1 glycine/serine hydroxymethyltransferase [Galdieria sulphuraria])

HSP 1 Score: 567.0 bits (1460), Expect = 6.100e-158
Identity = 282/445 (63.37%), Postives = 345/445 (77.53%), Query Frame = 0
Query:   94 QEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKK----------ELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTM-VAHAGEVVALRERVEAFATQYPFP 528
            Q D  V  L++ E++RQ  G+ELIASENF SKAVLEALGS  TNKYSEG+PGARYYGGN+Y+D LE LC+ RAL  F+L+   WGVNVQPYSGSPANFAV TALLQPHDRIMGLDLPSGGHLTHG+Y  K+RVSA+SIYFESLPYRV PVTG IDYE L++LA LFRP+LI+AGGSAYPR+WDYA+ R+I D   AYLM DMAHISGLV+A    +PFPY+DVVT+TTHKSLRGPR+GMIF+++          +L   I+ AVFP+LQGGPHNHQIAALAV L + +TP FR EY  QV  NA+ALA  L SLG+ + T+GTENHL+LWD+R   +TGSK EKL E  +I++NKN++HGD SA +PGGVR+GTPA+T+RG  E DF +V  FL  G+ + L IQ   + KKL DF   + V +  E++ L+ +VE+FA+ +P P
Sbjct:   18 QADPLVYELLEKEKRRQWKGLELIASENFTSKAVLEALGSAFTNKYSEGQPGARYYGGNQYIDELEILCQQRALEAFSLNPNDWGVNVQPYSGSPANFAVLTALLQPHDRIMGLDLPSGGHLTHGFYTAKKRVSASSIYFESLPYRVSPVTGYIDYENLEELARLFRPKLIIAGGSAYPREWDYAKFRKICDENDAYLMVDMAHISGLVAAKQVLSPFPYADVVTTTTHKSLRGPRAGMIFYRRQCLAYSRRGEDLEPLINSAVFPALQGGPHNHQIAALAVQLAQVNTPEFR-EYAKQVILNAQALAEKLNSLGYHLATSGTENHLILWDLRAQSLTGSKAEKLFEKCSITLNKNSVHGDSSALSPGGVRIGTPALTSRGFKEKDFEQVGEFLHRGIEIGLNIQR-KTGKKLQDFLSGLEVYYQPELIGLQNQVESFASSFPIP 460          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_004349634.1 (serine hydroxymethyltransferase [Acanthamoeba castellanii str. Neff] >ELR22546.1 serine hydroxymethyltransferase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 565.1 bits (1455), Expect = 2.300e-157
Identity = 282/445 (63.37%), Postives = 348/445 (78.20%), Query Frame = 0
Query:   93 AQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEA----------IHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            A  D EV  LI+ E+KRQ++GIELIASENF S+AVLEALGS MTNKYSEG PG RYYGGN+ +D +E LC  RAL  F+LS E WGVNVQPYSGSPANFA YTALL PHDRIMGLDLPSGGHLTHGY  +KR++SATSIYFES+PY+V   TGLIDY+ L++ A LFRP++I+AG SAYPRDWDY RLR+IA+  GAYL+ DMAHISG+V+A  CN+PF Y DVVT+TTHK+LRGPR+G+IFF++   EA          I+ AVFP+LQGGPH + IAA+AVALKEA+ P F+  YI QVK+NA+ LA  L S G+ +VT GT+NHL+LWDVRP  +TGSK+EKL E ++ISVNKN ++GD SA +PGGVR+G PAMT+RGLTE DFV+VA  L +G ++A+ IQ  + + KL+      +  + EV AL+E VEAFA+ +P P
Sbjct:   12 ADADPEVQGLIRLEKKRQLNGIELIASENFTSRAVLEALGSCMTNKYSEGLPGRRYYGGNEVIDQVENLCIKRALEAFHLSPEQWGVNVQPYSGSPANFAAYTALLNPHDRIMGLDLPSGGHLTHGYQTDKRKISATSIYFESMPYQVSYQTGLIDYDRLEENAALFRPKMIIAGASAYPRDWDYKRLRQIANKHGAYLLCDMAHISGIVAAQECNSPFEYCDVVTTTTHKTLRGPRAGLIFFRRGKNEATGAAYDYEDRINNAVFPALQGGPHENTIAAVAVALKEAAEPEFK-TYIQQVKKNAKVLAETLVSKGYSVVTGGTDNHLVLWDVRPQEMTGSKLEKLFELVSISVNKNAVYGDASALSPGGVRLGAPAMTSRGLTEADFVRVAELLHKGAQIAIAIQ--NKTGKLLKNYLPALETSEEVKALKEEVEAFASTFPMP 453          
BLAST of NO01G03110 vs. NCBI_GenBank
Match: XP_002676232.1 (hydroxymethyltransferase [Naegleria gruberi] >EFC43488.1 hydroxymethyltransferase [Naegleria gruberi])

HSP 1 Score: 563.1 bits (1450), Expect = 8.800e-157
Identity = 277/435 (63.68%), Postives = 340/435 (78.16%), Query Frame = 0
Query:   93 AQEDAEVAALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYGGNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYEELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISGLVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPSLQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHVIVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAPGGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFEKTMVAHAGEVVALRERVEAFATQYPFP 528
            +Q D E+  LI+ E++RQ  G+ELIASENF S+AV++ LGS +TNKYSEG+ GARYYGGN+Y+D +E+LC+ RAL  F+L+SE W VNVQPYSGSPANFAVYT LLQPHDRIMGLDLPSGGHLTHGYY+ K+++SATSIYFESLPY VD   GLIDY+ L+K A +FRP+LI+ GGSAYPRDWDYARLR+IAD   AYLM DMAH SGLV+ G  N+PF Y DVVTSTTHKSLRGPR+G+IF KK L   I FAVFP +QGGPHNHQIAA+A  LKE  TP F+Q YI QVK NA+ LA  L   G+ + T GT+NHL+LW++RP GITGSK+EKL +A++I+ NKN+I GD +A +P GVR+GTPA+TTRG  E DF KVA FL  G+++ LK+Q  + S KL DF   +  +  E+  L+  VE+FA Q+  P
Sbjct:   16 SQADPELFDLIEKEKERQWKGLELIASENFTSQAVMDCLGSCLTNKYSEGQVGARYYGGNEYIDEIEKLCKTRALEAFSLNSEDWSVNVQPYSGSPANFAVYTGLLQPHDRIMGLDLPSGGHLTHGYYSGKKKISATSIYFESLPYTVDQ-QGLIDYDGLEKSARVFRPKLIICGGSAYPRDWDYARLRKIADEIEAYLMCDMAHYSGLVATGEHNSPFQYCDVVTSTTHKSLRGPRAGIIFAKKALMPKIDFAVFPGIQGGPHNHQIAAIATQLKEVKTPEFKQ-YIQQVKANAKTLAKALIEKGYTLATGGTDNHLVLWNLRPQGITGSKMEKLFDAVSITSNKNSIAGDANALSPFGVRLGTPALTTRGFKEVDFEKVAEFLHRGVQIGLKLQEQAVSTKLADF-LALFENNEELTQLKSEVESFAKQFGIP 447          
The following BLAST results are available for this feature:
BLAST of NO01G03110 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29233.12.400e-23980.68serine hydroxymethyltransferase [Nannochloropsis g... [more]
XP_005773799.16.100e-16668.12hypothetical protein EMIHUDRAFT_424674 [Emiliania ... [more]
XP_005792856.16.100e-16668.12serine hydroxymethyltransferase [Emiliania huxleyi... [more]
KOO25971.13.700e-16366.44serine hydroxymethyltransferase [Chrysochromulina ... [more]
CBN76138.13.100e-16264.59serine hydroxymethyltransferase 2 [Ectocarpus sili... [more]
XP_005536271.11.000e-16065.01serine hydroxymethyltransferase [Cyanidioschyzon m... [more]
XP_005789291.12.200e-16063.23serine hydroxymethyltransferase [Emiliania huxleyi... [more]
XP_005706998.16.100e-15863.37glycine/serine hydroxymethyltransferase [Galdieria... [more]
XP_004349634.12.300e-15763.37serine hydroxymethyltransferase [Acanthamoeba cast... [more]
XP_002676232.18.800e-15763.68hydroxymethyltransferase [Naegleria gruberi] >EFC4... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008013NSK008013Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03110.1NO01G03110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537398gene_312Nannochloropsis oceanica (N. oceanica CCMP1779)gene
GLYM2gene1384Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03110.1NO01G03110.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03110 ID=NO01G03110|Name=NO01G03110|organism=Nannochloropsis oceanica|type=gene|length=2266bp
CTCCAGTGCTTGGCTGGTGCCTGTATTATGGTACGGGATTGAGCGGGCGT
CTGTTAGTGTCTTGGTAAGTAGGTCGCGACGGGCGTGACTGAAGAGGAAG
GAGACGTTGGGGGTGTTGCCGTTTGGGGTACGTGACTGTTTCAAGAGCTA
ACTTGGAAAAGCTCGCGGAGGCCCAAAAAATCCACGATACGGTTGAGTTT
TGTGGTGTGATGATCAAGTACCGTGACGGGCGAGTGCAAAAGTCTCACAG
ATGCAGCGTCGTGTGCATGTGAGGGATTTTTCGATGTGAGGGAGCGACTC
CTACTCGGACCCTTTTTCTCGAGACGCCTCAACCGCTGAGTTGAACAGGC
AGGCGATGACTCATTCAATGCACACCACCACATAGTAAGCACAGCTGCCC
TACAAAGAGCCCGAGCACAGAAAGGTCCAGATTACAAGCAATATGAGCAG
AGCTAGTCAAAGgtaagccagctcccagctcctccctccctagcctcccc
accccatctcatctcatcatcactcgcctctcacaccccacgccaataca
aaagACGGCAGCTTCCCGTGCTTGGGTTGGTAGCTGGGTGCTTCATCTCA
TTTGCCAGTGCCTTTGCCGTCCCACCCTCGTATTGGGCGCCATTGTCGTC
TTCAGTCGCCGCCCCAGCAGAAGTCACGAGCACCACAACAGCTTCGCAGT
GCCCCCTCCCTACGCCACAGAGTGCCAGGTCATACAACAATATCCCACCC
ACCAACGCAGCTTCCGTCTCGACTGATGCCACCACTACAGCAGCAGCATC
GTCCGTTCTCGCGCAGGAGGATGCGGAAGTGGCGGCTCTCATCCAAGCAG
AGCGGAAGCGACAAATTTCGGGCATTGAATTGATTGCAAGCGAGAATTTT
GCCTCCAAAGCTGTTTTGGAAGCCTTGGGCTCCATCATGACCAACAAGTA
CTCCGAAGGCCGACCAGGTGCCCGCTATTATGGAGGAAACAAGTACGTGG
ATGCCTTGGAGAGGCTGTGTGAGGCGAGGGCGTTGTCGCTTTTTAATCTG
TCTTCTGAGAGCTGGGGCGTGAACGTGCAACCCTACTCGGGTAGCCCAGC
CAATTTCGCTGTCTATACTGCGTTGCTCCAACCCCATGACCGCATAATGG
GCCTGGATTTGCCATCGGGGGGGCATTTGACACACGGATACTACAACGAA
AAGCGGCGGGTCTCGGCGACCTCTATATATTTTGAGAGCTTGCCTTATCG
CGTGGACCCCGTCACAGGTCTAATTGATTACGAGGAACTTCAAAAGCTCG
CCTTGCTTTTCCGACCCCGCCTTATTGTGGCGGGTGGAAGTGCCTACCCG
CGTGATTGGGATTACGCACGTTTGCGAGAGATTGCTGATGCTTGCGGTGC
TTACTTGATGACAGATATGGCTCACATAAGTGGCTTGGTCTCCGCGGGGG
CGTGCAACAACCCTTTCCCCTACTCCGACGTTGTCACTTCTACCACGCAC
AAGTCTTTGCGTGGGCCTCGTTCAGGCATGATTTTTTTCAAAAAGGAGCT
GGCGGAGGCGATTCATTTTGCTGTCTTTCCCTCTTTGCAAGGGGGGCCGC
ACAACCACCAGATTGCCGCCTTGGCCGTGGCGCTGAAGGAGGCGTCCACT
CCCTCTTTTCGGCAAGAGTACATTTGGCAGGTGAAACGCAATGCAGAGGC
GCTTGCGATGGGGCTTCAGAGTTTGGGACATGTCATCGTGACGAATGGCA
CGGAGAATCATCTCTTATTGTGGGATGTGCGTCCACATGGTATAACGGGC
TCCAAAGTGGAGAAGCTATTAGAGGCTATTGCCATTTCGGTGAATAAAAA
TACAATCCATGGGGATAAAAGTGCTAGTGCTCCAGGTGGGGTTAGGGTAG
GGACCCCAGCCATGACTACACGGGGGTTGACAGAAGGCGATTTCGTCAAG
GTGGCGGCCTTCCTGGATGAAGGCTTACGGTTGGCTTTGAAGATACAGGC
GGGAAGTAGCAGTAAGAAATTGGTGGATTTTGAAAAGACAATGGTTGCGC
ATGCGGGCGAAGTGGTAGCGTTAAGAGAGAGGGTGGAGGCGTTTGCGACA
CAATATCCGTTTCCATCGTGAGGAGGGGAGGGGGGCCAGGGAAGGAAAAA
AGGGGAAAATGACAAAGCTTTTGAGAGGCAGTAACGAGAGATGCACGCCC
ACACCCAGCAGAACAAGAAGAGATGTAACGAAATGTATATAAATGTAAAG
AAGCCGCTGTTTTCAT
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protein sequence of NO01G03110.1

>NO01G03110.1-protein ID=NO01G03110.1-protein|Name=NO01G03110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MSRASQRRQLPVLGLVAGCFISFASAFAVPPSYWAPLSSSVAAPAEVTST
TTASQCPLPTPQSARSYNNIPPTNAASVSTDATTTAAASSVLAQEDAEVA
ALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYG
GNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQP
HDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYE
ELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISG
LVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPS
LQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHV
IVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAP
GGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFE
KTMVAHAGEVVALRERVEAFATQYPFPS*
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Synonyms
Publications