NO01G03050, NO01G03050 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03050 vs. NCBI_GenBank
Match: XP_005537400.1 (photosystem II oxygen-evolving complex 23K protein [Cyanidioschyzon merolae strain 10D] >BAM81364.1 photosystem II oxygen-evolving complex 23K protein [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 126.7 bits (317), Expect = 9.600e-26 Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = 0 Query: 24 PSKSSSTISSARPQSRALSSSTALAALSTSMHDRRGLLFKTTGSLLGLAGLALVRPA---NAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSP--ETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241 PS+ + S R S+ + A + ++H R L +TT LL AG PA A E P V + LE Y D+ +G K+ RP GWN+FDG P Y K+ DII E V + S PVK T + +LGD + +GK+LA+ RGA LV A + ++G+L+Y FE+ E +L+ L + +GRL++++A A+ RW + L + V+ SF+P+L Sbjct: 35 PSQRLFSSCSGERTERPASALPSSGATTGALHWTRRSLIQTT--LLLAAGCVAGSPALAEKATAEAPAVPRDVRNQLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVFSIPVKPGKT-LASLGDAEAVGKRLAEQRGATLVAANQKESDGILYYVFEYVREPAHQLSLLTINRGRLFSVNACASEARWKRLEKLLRAVVDSFVPQL 253
BLAST of NO01G03050 vs. NCBI_GenBank
Match: XP_005709156.1 (photosystem II oxygen-evolving complex 23kDa protein [Galdieria sulphuraria] >ADD54620.1 chloroplast photosystem II 23 kDa precursor [Galdieria sulphuraria] >EME32636.1 photosystem II oxygen-evolving complex 23kDa protein [Galdieria sulphuraria]) HSP 1 Score: 117.5 bits (293), Expect = 5.800e-23 Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 0 Query: 82 AYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241 A +E V + +E Y D+ +G K+ RP GWN+F G Y +KW DII E+V++ + + S++ LG +IG+KLAK R +LV A + T G+ YE E KG+ + +L L +K +L+N++AT + RW+ + L + V+ SF+P L Sbjct: 86 AKEEKQSVPASVANQVETYKDLIQGYKILRPLGWNEFSGQRNQYDIKWQDIIQPLEVVMIATVDI-GKNKSIKDLGSPMQIGEKLAKNRKLQLVTATEKETGGIPAYEIELKGDPLHQLVLLTASKSKLFNVTATCSESRWSNREKLLRTVVESFVPSL 243
BLAST of NO01G03050 vs. NCBI_GenBank
Match: OSX70278.1 (hypothetical protein BU14_0818s0007 [Porphyra umbilicalis]) HSP 1 Score: 116.3 bits (290), Expect = 1.300e-22 Identity = 74/203 (36.45%), Postives = 110/203 (54.19%), Query Frame = 0 Query: 40 ALSSSTALAALSTSMHDRRGLL--FKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241 AL+S A+AA GL+ TTG G LV A+A V LG +E Y D+ KG + RP GWNQF+ + Y +KW D+I E++ + +TPV T V +G +G KLAK R AELV A ++ EG+ +Y E K ++ +L +L V K +L++++ ++A +W+K+ L +GV SF P L Sbjct: 51 ALASGAAVAA---------GLIASASTTG------GPVLVPSAHAATAV-----NLGSSVEVYKDLNKGFTILRPQGWNQFEATAGQYDIKWQDLIQPLEIITVLTTPVGKGKT-VADIGTPDAVGTKLAKSRRAELVSAVSKEEEGLTYYTVELKSASVHQLTTLVVNKSKLYSVNVSSAEGKWSKREKLLRGVAESFKPSL 232
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_006170517.1 (PsbP [Synechococcus sp. WH 5701] >EAQ75186.1 PsbP [Synechococcus sp. WH 5701]) HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11 Identity = 70/192 (36.46%), Postives = 92/192 (47.92%), Query Frame = 0 Query: 57 RRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 RRGLL GSLL L GL+ A A L P A P+GW + S VV + D+IN DE + L + V A T +E+LG +G+KL + GR AELVEA R G FY+ E+ ELA++ V +GRL+ L+A+ RW K +DLF+ VI SF Sbjct: 14 RRGLLGLLLGSLLLLGGLSGCSAAAA---------GLNSFQSPDGRYA----FLYPTGWTRVAVSNGPQVV-FHDLINSDETLSLVISEVNA-TNELESLGSAVAVGEKLGRIVIAPQGSGREAELVEAGEREDGGHTFYDLEYAVHLSDRDRHELATVVVDRGRLYTLAASTNELRWPKVKDLFRNVITSF 190
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_094555688.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. 1G10]) HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10 Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 0 Query: 112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 P+GW + S VV + D+IN DE + L + V A T +E+LG +G+KL + GR AELVEA R G FY+ E+ ELA++ V +GRL+ L+A+ RW K +DLF+ VI SF Sbjct: 40 PTGWTRVAVSNGPQVV-FHDLINSDETLSLVISDVNA-TNELESLGSAVAVGEKLGRIVIAPEGSGREAELVEASEREDGGHTFYDLEYAVHLSDRDRHELATVVVDRGRLYTLAASTNELRWPKVKDLFRNVITSF 174
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_015170540.1 (photosystem II oxygen evolving complex protein PsbP [Geitlerinema sp. PCC 7407] >AFY64972.1 photosystem II oxygen evolving complex protein PsbP [Geitlerinema sp. PCC 7407]) HSP 1 Score: 75.5 bits (184), Expect = 2.500e-10 Identity = 52/157 (33.12%), Postives = 83/157 (52.87%), Query Frame = 0 Query: 94 GGLLEPYTDIAKGLKVSRPSGW--NQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAISE----LASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 G L Y + KG + P+GW + G P+ V + D+I E V + PV+ T ++ LG E+G++LA+ GR AELV A+AR ++G+ +Y E++ E ++ LAS V++GRL + + +RW K + FK V+ SF Sbjct: 24 GAGLNSYVNTNKGYEFLYPTGWVSVKVSGGPD---VVFHDLIEETENVSVVINPVEEGQT-LQDLGTPSELGQRLAQSIISSVEAGRKAELVNAEARESQGITYYLLEYEVELPNQKRHNLASAAVSRGRLLTFNVSTPERRWPKMAERFKTVVSSF 176
BLAST of NO01G03050 vs. NCBI_GenBank
Match: OUW46013.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. TMED187]) HSP 1 Score: 75.1 bits (183), Expect = 3.300e-10 Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 0 Query: 112 PSGWNQ--FDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 PSGW + G P+ V + D+IN DE V L + V A ++ LG V +G++L + GR AELVEA+ R T G FY+ E+ + ELA++ V +GRL+ L+A+ RW K + LF+ V+ SF Sbjct: 46 PSGWTRVAVSGGPQ---VVFHDLINSDETVSLVVSEVDAD-DELQQLGSVVAVGERLRRDVIAPAGSGRDAELVEARERETSGHTFYDLEYAVHLQDRDRHELATVVVDRGRLYTLAASTNELRWPKVKGLFERVVSSF 180
BLAST of NO01G03050 vs. NCBI_GenBank
Match: APD49214.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. SynAce01]) HSP 1 Score: 74.7 bits (182), Expect = 4.300e-10 Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 0 Query: 112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAIS----ELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 P+GWN+ S VV + D+IN DE + L + V T S+E LG +G+KL + GR AELVEA R G FY+ E+ ELA++ V +GRL+ L+A+ RW K DLF VI SF Sbjct: 50 PTGWNRVAVSDGPQVV-FHDLINSDETLSLVISDVN-DTNSLENLGSAVAVGEKLGRIVIAPEGSGRQAELVEAIEREDGGHTFYDLEYAVHLADRDRHELATVVVDRGRLYTLAASTNEARWPKVSDLFHNVITSF 184
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_083544596.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. SynAce01]) HSP 1 Score: 74.7 bits (182), Expect = 4.300e-10 Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 0 Query: 112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAIS----ELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237 P+GWN+ S VV + D+IN DE + L + V T S+E LG +G+KL + GR AELVEA R G FY+ E+ ELA++ V +GRL+ L+A+ RW K DLF VI SF Sbjct: 60 PTGWNRVAVSDGPQVV-FHDLINSDETLSLVISDVN-DTNSLENLGSAVAVGEKLGRIVIAPEGSGRQAELVEAIEREDGGHTFYDLEYAVHLADRDRHELATVVVDRGRLYTLAASTNEARWPKVSDLFHNVITSF 194
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_106370129.1 (photosystem II oxygen evolving complex protein PsbP [Chlorogloea sp. CCALA 695] >PSB30307.1 photosystem II oxygen evolving complex protein PsbP [Chlorogloea sp. CCALA 695]) HSP 1 Score: 74.3 bits (181), Expect = 5.700e-10 Identity = 54/157 (34.39%), Postives = 79/157 (50.32%), Query Frame = 0 Query: 94 GGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF-----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFL 238 G L+ Y D +G + P+GW S +V + D+I E V + +PV T E LG E+G KL+K GR AELV A +R +G +Y EF + LAS+ V++G+L+ +A+A KRW K + F+ V+ SFL Sbjct: 25 GAGLKSYVDATRGYEFLYPNGWLPVKVSNGADIV-FHDMIEISENVSVVVSPVANGKTLAE-LGTPTEVGYKLSKSAIAPPDSGREAELVNAASREVKGKKYYLLEFAVKLPNNQERHNLASVAVSRGKLYTFNASAPEKRWQKVQTQFESVVDSFL 179 The following BLAST results are available for this feature:
BLAST of NO01G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03050 ID=NO01G03050|Name=NO01G03050|organism=Nannochloropsis oceanica|type=gene|length=1792bpback to top protein sequence of NO01G03050.1 >NO01G03050.1-protein ID=NO01G03050.1-protein|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bpback to top Synonyms
Publications
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