NO01G03050, NO01G03050 (gene) Nannochloropsis oceanica

Overview
NameNO01G03050
Unique NameNO01G03050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1792
Alignment locationchr1:799603..801394 -

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Properties
Property NameValue
DescriptionPhotosystem ii oxygen evolving complex protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:799603..801394 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
GO:0019898extrinsic component of membrane
GO:0016020membrane
GO:0009579thylakoid
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR016123Mog1/PsbP_a/b/a-sand
IPR002683PSII_PsbP
Homology
BLAST of NO01G03050 vs. NCBI_GenBank
Match: XP_005537400.1 (photosystem II oxygen-evolving complex 23K protein [Cyanidioschyzon merolae strain 10D] >BAM81364.1 photosystem II oxygen-evolving complex 23K protein [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 126.7 bits (317), Expect = 9.600e-26
Identity = 82/222 (36.94%), Postives = 123/222 (55.41%), Query Frame = 0
Query:   24 PSKSSSTISSARPQSRALSSSTALAALSTSMHDRRGLLFKTTGSLLGLAGLALVRPA---NAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSP--ETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241
            PS+   +  S     R  S+  +  A + ++H  R  L +TT  LL  AG     PA    A  E P V   +   LE Y D+ +G K+ RP GWN+FDG P    Y  K+ DII   E V + S PVK   T + +LGD + +GK+LA+ RGA LV A  + ++G+L+Y FE+  E   +L+ L + +GRL++++A A+  RW +   L + V+ SF+P+L
Sbjct:   35 PSQRLFSSCSGERTERPASALPSSGATTGALHWTRRSLIQTT--LLLAAGCVAGSPALAEKATAEAPAVPRDVRNQLELYVDLQRGYKMYRPKGWNEFDGDPGNTKYEKKFQDIIQPLEFVTVFSIPVKPGKT-LASLGDAEAVGKRLAEQRGATLVAANQKESDGILYYVFEYVREPAHQLSLLTINRGRLFSVNACASEARWKRLEKLLRAVVDSFVPQL 253          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: XP_005709156.1 (photosystem II oxygen-evolving complex 23kDa protein [Galdieria sulphuraria] >ADD54620.1 chloroplast photosystem II 23 kDa precursor [Galdieria sulphuraria] >EME32636.1 photosystem II oxygen-evolving complex 23kDa protein [Galdieria sulphuraria])

HSP 1 Score: 117.5 bits (293), Expect = 5.800e-23
Identity = 58/159 (36.48%), Postives = 92/159 (57.86%), Query Frame = 0
Query:   82 AYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241
            A +E   V   +   +E Y D+ +G K+ RP GWN+F G    Y +KW DII   E+V++ +  +     S++ LG   +IG+KLAK R  +LV A  + T G+  YE E KG+ + +L  L  +K +L+N++AT +  RW+ +  L + V+ SF+P L
Sbjct:   86 AKEEKQSVPASVANQVETYKDLIQGYKILRPLGWNEFSGQRNQYDIKWQDIIQPLEVVMIATVDI-GKNKSIKDLGSPMQIGEKLAKNRKLQLVTATEKETGGIPAYEIELKGDPLHQLVLLTASKSKLFNVTATCSESRWSNREKLLRTVVESFVPSL 243          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: OSX70278.1 (hypothetical protein BU14_0818s0007 [Porphyra umbilicalis])

HSP 1 Score: 116.3 bits (290), Expect = 1.300e-22
Identity = 74/203 (36.45%), Postives = 110/203 (54.19%), Query Frame = 0
Query:   40 ALSSSTALAALSTSMHDRRGLL--FKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL 241
            AL+S  A+AA         GL+    TTG      G  LV  A+A   V      LG  +E Y D+ KG  + RP GWNQF+ +   Y +KW D+I   E++ + +TPV    T V  +G    +G KLAK R AELV A ++  EG+ +Y  E K  ++ +L +L V K +L++++ ++A  +W+K+  L +GV  SF P L
Sbjct:   51 ALASGAAVAA---------GLIASASTTG------GPVLVPSAHAATAV-----NLGSSVEVYKDLNKGFTILRPQGWNQFEATAGQYDIKWQDLIQPLEIITVLTTPVGKGKT-VADIGTPDAVGTKLAKSRRAELVSAVSKEEEGLTYYTVELKSASVHQLTTLVVNKSKLYSVNVSSAEGKWSKREKLLRGVAESFKPSL 232          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_006170517.1 (PsbP [Synechococcus sp. WH 5701] >EAQ75186.1 PsbP [Synechococcus sp. WH 5701])

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-11
Identity = 70/192 (36.46%), Postives = 92/192 (47.92%), Query Frame = 0
Query:   57 RRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            RRGLL    GSLL L GL+    A A          L     P    A       P+GW +   S    VV + D+IN DE + L  + V A T  +E+LG    +G+KL +        GR AELVEA  R   G  FY+ E+          ELA++ V +GRL+ L+A+    RW K +DLF+ VI SF
Sbjct:   14 RRGLLGLLLGSLLLLGGLSGCSAAAA---------GLNSFQSPDGRYA----FLYPTGWTRVAVSNGPQVV-FHDLINSDETLSLVISEVNA-TNELESLGSAVAVGEKLGRIVIAPQGSGREAELVEAGEREDGGHTFYDLEYAVHLSDRDRHELATVVVDRGRLYTLAASTNELRWPKVKDLFRNVITSF 190          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_094555688.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. 1G10])

HSP 1 Score: 75.9 bits (185), Expect = 2.000e-10
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 0
Query:  112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            P+GW +   S    VV + D+IN DE + L  + V A T  +E+LG    +G+KL +        GR AELVEA  R   G  FY+ E+          ELA++ V +GRL+ L+A+    RW K +DLF+ VI SF
Sbjct:   40 PTGWTRVAVSNGPQVV-FHDLINSDETLSLVISDVNA-TNELESLGSAVAVGEKLGRIVIAPEGSGREAELVEASEREDGGHTFYDLEYAVHLSDRDRHELATVVVDRGRLYTLAASTNELRWPKVKDLFRNVITSF 174          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_015170540.1 (photosystem II oxygen evolving complex protein PsbP [Geitlerinema sp. PCC 7407] >AFY64972.1 photosystem II oxygen evolving complex protein PsbP [Geitlerinema sp. PCC 7407])

HSP 1 Score: 75.5 bits (184), Expect = 2.500e-10
Identity = 52/157 (33.12%), Postives = 83/157 (52.87%), Query Frame = 0
Query:   94 GGLLEPYTDIAKGLKVSRPSGW--NQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAISE----LASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            G  L  Y +  KG +   P+GW   +  G P+   V + D+I   E V +   PV+   T ++ LG   E+G++LA+        GR AELV A+AR ++G+ +Y  E++ E  ++    LAS  V++GRL   + +   +RW K  + FK V+ SF
Sbjct:   24 GAGLNSYVNTNKGYEFLYPTGWVSVKVSGGPD---VVFHDLIEETENVSVVINPVEEGQT-LQDLGTPSELGQRLAQSIISSVEAGRKAELVNAEARESQGITYYLLEYEVELPNQKRHNLASAAVSRGRLLTFNVSTPERRWPKMAERFKTVVSSF 176          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: OUW46013.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. TMED187])

HSP 1 Score: 75.1 bits (183), Expect = 3.300e-10
Identity = 52/139 (37.41%), Postives = 76/139 (54.68%), Query Frame = 0
Query:  112 PSGWNQ--FDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            PSGW +    G P+   V + D+IN DE V L  + V A    ++ LG V  +G++L +        GR AELVEA+ R T G  FY+ E+    +     ELA++ V +GRL+ L+A+    RW K + LF+ V+ SF
Sbjct:   46 PSGWTRVAVSGGPQ---VVFHDLINSDETVSLVVSEVDAD-DELQQLGSVVAVGERLRRDVIAPAGSGRDAELVEARERETSGHTFYDLEYAVHLQDRDRHELATVVVDRGRLYTLAASTNELRWPKVKGLFERVVSSF 180          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: APD49214.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. SynAce01])

HSP 1 Score: 74.7 bits (182), Expect = 4.300e-10
Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAIS----ELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            P+GWN+   S    VV + D+IN DE + L  + V   T S+E LG    +G+KL +        GR AELVEA  R   G  FY+ E+          ELA++ V +GRL+ L+A+    RW K  DLF  VI SF
Sbjct:   50 PTGWNRVAVSDGPQVV-FHDLINSDETLSLVISDVN-DTNSLENLGSAVAVGEKLGRIVIAPEGSGRQAELVEAIEREDGGHTFYDLEYAVHLADRDRHELATVVVDRGRLYTLAASTNEARWPKVSDLFHNVITSF 184          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_083544596.1 (photosystem II oxygen evolving complex protein PsbP [Synechococcus sp. SynAce01])

HSP 1 Score: 74.7 bits (182), Expect = 4.300e-10
Identity = 54/137 (39.42%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  112 PSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEFKGEAIS----ELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSF 237
            P+GWN+   S    VV + D+IN DE + L  + V   T S+E LG    +G+KL +        GR AELVEA  R   G  FY+ E+          ELA++ V +GRL+ L+A+    RW K  DLF  VI SF
Sbjct:   60 PTGWNRVAVSDGPQVV-FHDLINSDETLSLVISDVN-DTNSLENLGSAVAVGEKLGRIVIAPEGSGRQAELVEAIEREDGGHTFYDLEYAVHLADRDRHELATVVVDRGRLYTLAASTNEARWPKVSDLFHNVITSF 194          
BLAST of NO01G03050 vs. NCBI_GenBank
Match: WP_106370129.1 (photosystem II oxygen evolving complex protein PsbP [Chlorogloea sp. CCALA 695] >PSB30307.1 photosystem II oxygen evolving complex protein PsbP [Chlorogloea sp. CCALA 695])

HSP 1 Score: 74.3 bits (181), Expect = 5.700e-10
Identity = 54/157 (34.39%), Postives = 79/157 (50.32%), Query Frame = 0
Query:   94 GGLLEPYTDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKASTTSVEALGDVQEIGKKLAK--------GRGAELVEAKARLTEGVLFYEFEF-----KGEAISELASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFL 238
            G  L+ Y D  +G +   P+GW     S    +V + D+I   E V +  +PV    T  E LG   E+G KL+K        GR AELV A +R  +G  +Y  EF       +    LAS+ V++G+L+  +A+A  KRW K +  F+ V+ SFL
Sbjct:   25 GAGLKSYVDATRGYEFLYPNGWLPVKVSNGADIV-FHDMIEISENVSVVVSPVANGKTLAE-LGTPTEVGYKLSKSAIAPPDSGREAELVNAASREVKGKKYYLLEFAVKLPNNQERHNLASVAVSRGKLYTFNASAPEKRWQKVQTQFESVVDSFL 179          
The following BLAST results are available for this feature:
BLAST of NO01G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005537400.19.600e-2636.94photosystem II oxygen-evolving complex 23K protein... [more]
XP_005709156.15.800e-2336.48photosystem II oxygen-evolving complex 23kDa prote... [more]
OSX70278.11.300e-2236.45hypothetical protein BU14_0818s0007 [Porphyra umbi... [more]
WP_006170517.13.000e-1136.46PsbP [Synechococcus sp. WH 5701] >EAQ75186.1 PsbP ... [more]
WP_094555688.12.000e-1038.69photosystem II oxygen evolving complex protein Psb... [more]
WP_015170540.12.500e-1033.12photosystem II oxygen evolving complex protein Psb... [more]
OUW46013.13.300e-1037.41photosystem II oxygen evolving complex protein Psb... [more]
APD49214.14.300e-1039.42photosystem II oxygen evolving complex protein Psb... [more]
WP_083544596.14.300e-1039.42photosystem II oxygen evolving complex protein Psb... [more]
WP_106370129.15.700e-1034.39photosystem II oxygen evolving complex protein Psb... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008020NSK008020Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G03050.1NO01G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537385gene_306Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100119g18gene1392Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G03050.1NO01G03050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G03050 ID=NO01G03050|Name=NO01G03050|organism=Nannochloropsis oceanica|type=gene|length=1792bp
AGCGGTGTGAGTTTTGAATGTGAGACGCGCGTGTCGCACACTGCAAGGGG
CTGCGCCCTTGCCTGCCTTACTCATCTCTTGGTGTGGAGGTATATGAAGC
ACCTGTGAGTCGCGTTTAAAAGAACTGACCCGCCAATTTTGTGGGTCCTC
CCGACAGGAGAGCCTCTCGGGGTTCTTCCACCGGGACCTGAGGGGCAATC
GTCACACTTTCTTGCACGAAGAAATACAGCAGGATGGATGCATCAACGGG
TTACGACCAGTGCTGCCACAATCCCTCCACCCACACAAGATGTGCTGGGT
GGAGGTCATGCATATTTATTGATTCATACACCATTGTCAACAATGTCAAT
CACACGCACACGATTTCCTTGTCGCACGTAATTTCCCCGCTTGACAACAA
CAACCAGAAGCCATGCGGAGCTCCGTCATCGCGGTGGCTTGCCTCGTGGC
TGCCTGCGGCAGAACCCAGGCCTTTGTCCTTCCTAGCAAGTCTTCCTCCA
CAATCTCCTCCGCTCGACCGCAATCAAGAGCTCTGAGCAGCAGCACAGCC
CTGGCGGCGTTGTCCACCTCCATGCATGACCGGCGTGGCCTCCTCTTCAA
GACGACAGGGTCGTTGCTTGGGTTGGCCGGCCTGGCCTTGGTCCGCCCCG
CCAATGCCTATGACGAGGTGCCCCTCGTCCGTGACAAGTTGGGTGGGTTG
CTGGAACCGTACACGGATATTGCCAAGgtaagggggaggggagaagggtg
aagggggttttgatactgaaggggcaagagggcgaagaggcgcttggcaa
gatagatgaatcaacagacttgttttttcgttcattcaatctctatggcg
atgggtctgaaggaaagacctgaataacgtgtgtctcccacgtgtcatcg
agaggcaaagtgctgatctgaggatgtcttctctcctctgattttggttg
cgaaaaacagtgagtgtctgtgggggaaaaagctgaagatttccatgcgt
cagatactcaagtcctcggtcttttgaaacagaaaattctaagggtacaa
tcacatgcaagcactaaaaggaacccctcccccacttcattcgcacacat
atccgtacagGGTCTCAAAGTCTCCCGCCCCTCCGGGTGGAACCAATTTG
ACGGCTCCCCCGAGACATACGTGGTAAAGTGGAGCGATATCATCAACCGC
GACGAGCTCGTCGTGTTGAACTCCACACCTGTCAAGGCATCCACCACTTC
CGTGGAAGCTCTGGGGGATGTCCAAGAAATTGGAAAAAAACTTGCGAAAG
GCCGCGGAGCCGAGCTGGTCGAGGCCAAGGCGAGGCTGACGGAGGGGGTA
TTGTTTTATGAGTTTGAGTTCAAGGGGGAGGCGATCTCGGAGTTGGCGTC
TTTGTGCGTGGCAAAGGGGCGACTGTGGAATCTGAGTGCGACGGCCGCGA
CAAAACGATGGGCGAAGAAGAGGGATTTGTTCAAGGGGGTGATTGGTTCC
TTCTTGCCTAAGCTCTAAGCAACGGGGGGAAGAAGCTGTGCCATTAAAGC
TATTCTTGTTTCTGATTTCAGTCTTGGAGTGTCTAGATTCGTGTATCTGT
GAGTGCAAGTTGAGTGAGCATCATCTTTGTCGTTGGAGTCTTTTAAAGGC
AAGCAGTACAATTCTTCAGGGGCCATGTCCCCCTCCAGAGGTAGGAAGCA
ATTAATCAATCGCAAAAACTTTTAAAAGATGCGCACGCACACAATGATAA
GGACGACTTATAGACGGGCATCGTACTTTCAAGATAAACATA
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protein sequence of NO01G03050.1

>NO01G03050.1-protein ID=NO01G03050.1-protein|Name=NO01G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MRSSVIAVACLVAACGRTQAFVLPSKSSSTISSARPQSRALSSSTALAAL
STSMHDRRGLLFKTTGSLLGLAGLALVRPANAYDEVPLVRDKLGGLLEPY
TDIAKGLKVSRPSGWNQFDGSPETYVVKWSDIINRDELVVLNSTPVKAST
TSVEALGDVQEIGKKLAKGRGAELVEAKARLTEGVLFYEFEFKGEAISEL
ASLCVAKGRLWNLSATAATKRWAKKRDLFKGVIGSFLPKL*
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Synonyms
Publications