NO01G03000, NO01G03000 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G03000 vs. NCBI_GenBank
Match: EWM29222.1 (pseudouridine synthase [Nannochloropsis gaditana]) HSP 1 Score: 481.1 bits (1237), Expect = 3.400e-132 Identity = 236/328 (71.95%), Postives = 277/328 (84.45%), Query Frame = 0 Query: 73 GNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDG--GERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVEDWSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSSSPL 399 G+ + ALDLSAAA+G TVEEVL LA +P VA+AL +F GL+DC PHAE L RLHHLNFII+QGVYSF EA+ LI+ Q +FLEM FS VY+D DL+V+NKPSDVRMDVPQR G G+RKWP EFTCSDWLD PGL++PPL+KKRFCHNLDSATSGILCVARNQAAAARVV+LF++R V+KEYLAVVFGHV++ S +T+FIDAPIEKDP SDFRMRIGP+GK+AQTQV VL +G+L LQGPH+NAPVSKL LKPITGRRHQLRVHT+SLG+GIVGD+YV DW++YR+MLHAHKL LP++ +K L L T DPF L+S PL Sbjct: 92 GHVPTTESLHALDLSAAAKGQTVEEVLLLAQLPRDIVAKALTSFPGLRDCHPHAEVLGRLHHLNFIIQQGVYSFSEALHLIANQPQFLEMPFSIVYEDDDLVVINKPSDVRMDVPQRKGVQGQRKWPMEFTCSDWLDTPGLIEPPLEKKRFCHNLDSATSGILCVARNQAAAARVVELFSKRMVEKEYLAVVFGHVSSTADS-DTLFIDAPIEKDPHSDFRMRIGPEGKSAQTQVEVLERGFLRLQGPHFNAPVSKLRLKPITGRRHQLRVHTMSLGYGIVGDTYVGDWASYRMMLHAHKLGLPMAPDKHLQLVTVDPFQALISPQPL 418
BLAST of NO01G03000 vs. NCBI_GenBank
Match: CEM11775.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 227.6 bits (579), Expect = 6.700e-56 Identity = 136/332 (40.96%), Postives = 186/332 (56.02%), Query Frame = 0 Query: 67 QAQARDGNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVEDWS------TYRLMLHAHKLFLPISAE---KQLHLETPDPF 390 Q A D + A DLSAA Q + E L+LAGVP+ V A+ F G++D E L RL NF+I+ G + E+ LI+ Q LE V++ +V++KP +VRMDVP+ K+ E T +DW P DK R CH LD ATSG+L + + + A R LF++RK +K+YLA+V+GH P + T +DA IE+DP +F M+I GK +QT V VL + +L L+GP PV+KLLL P TGRRHQLR+H +GH IVGD + +YR+ LHA++L LP + + L LE PDPF Sbjct: 26 QPPAEDPSLPSAIAAPHFDLSAAEQAADGVEALELAGVPAEMVTAAVRRFPGVRDLHVEDEVLARLDQFNFLIQDGALTVEQTHRLIANQPWCLERAIKVVHECEGYVVIDKPDNVRMDVPRTK--SHKYDRELTVADWFK---RRCPSSDKVRPCHQLDHATSGVLVMGKTKEATGRCAVLFSQRKARKQYLALVYGH----PSWDETT-VDAAIEEDPNHEFNMQISESGKPSQTAVKVLQRSHLALEGPLKGTPVAKLLLIPATGRRHQLRLHCRHVGHPIVGDYQYSAYGRGHEPPSYRMCLHAYRLELPFDDDGEGQPLVLEAPDPF 347
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_002502205.1 (pseudouridine synthase [Micromonas commoda] >ACO63463.1 pseudouridine synthase [Micromonas commoda]) HSP 1 Score: 188.3 bits (477), Expect = 4.500e-44 Identity = 116/308 (37.66%), Postives = 166/308 (53.90%), Query Frame = 0 Query: 91 QGSTVEEVLQLAGVPSRNVARALEAFIGLQD-CDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGE----RKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDP--TSDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWSTYRLMLHAHKLFLPISAEK-QLHLETPDP 389 +G + E L AG+ V + A + D E R+++L F+ + E I+ Q + LE +F V++D D V+NKP VR+D P+ G+ K+P + + DWL+ P D RFCH LD+ATSG+L A N+ AA LF ER+ +K YLA+VFGH P T +D P+ +DP FR R+ P+ GKA +T+ VL +G L L+G PVSK+ + P+TGRRHQ+R+H GH IVGD +Y +D ++R LHAHKL LP + + P+P Sbjct: 56 EGRDLRETLANAGMTPEQVRDVISAHPQVDTRYDLVNEVQPRINYLRFLDDNDRLDGESVSSCIARQPQSLERDFHLVHEDADYAVVNKPWCVRLDTPRGWPGKVRFTPKYPGDLSVEDWLE---RRYPDWDTVRFCHQLDNATSGVLVAASNKRAAGAAAKLFRERRARKTYLAIVFGH---PEQDEWT--VDVPMGRDPDDPKGFRERVDPEHGKACETRFRVLKRGRLNLRGKFEGVPVSKVEVTPVTGRRHQIRLHLQFSGHPIVGDNAYSQDTDSFRTFLHAHKLTLPFDEPRGTMQFVAPEP 355
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_003059545.1 (pseudouridine synthase [Micromonas pusilla CCMP1545] >EEH56677.1 pseudouridine synthase [Micromonas pusilla CCMP1545]) HSP 1 Score: 178.7 bits (452), Expect = 3.600e-41 Identity = 120/328 (36.59%), Postives = 169/328 (51.52%), Query Frame = 0 Query: 70 ARDGNSDLDKCARALDLSAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYKDGDLLVMNKPSDVRMDVPQ--RDGGER-------KWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRI-------GPDGKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWSTYRLMLHAHKLFLPISAE 379 A G + C R + + +G V VL AG+ V + L+ D E + R+++L F+ + E + I+ Q LE F V++ D V+NKP VR+D P+ +D K+P + + DWL+ P D RF H LD+ATSG+L A N+ AA R LF ER +K Y+A+VFGH P T DA + +DP+ F+ R+ G +GKA++T+ VL +G L+G H A VSK+L+ PITGRRHQ+RVH G+ IVGD +Y ED T+R LHAH L LP A+ Sbjct: 88 ANPGLDAANLCIRGV----SVEGDDVRAVLANAGLSPTQVDAVTTSHPDLETYDLAREVVPRVNYLRFLHDNDRLGGESVADAIARQPHSLERRFHLVHECEDYAVVNKPWCVRLDTPRGWKDAAGNPLNRFTPKYPGDLSVEDWLEER---YPGWDTVRFVHQLDNATSGVLVAASNKRAAGRAAKLFRERAARKAYIALVFGH---PREDEWT--CDAKLGRDPSDPKGFKERVVVDGEEEGVEGKASETRFKVLQRGTFALRGKHEGADVSKVLVTPITGRRHQIRVHLAHGGYPIVGDAAYSEDKDTFRTFLHAHALTLPFDAK 403
BLAST of NO01G03000 vs. NCBI_GenBank
Match: OAD07938.1 (hypothetical protein MUCCIDRAFT_104888 [Mucor circinelloides f. lusitanicus CBS 277.49]) HSP 1 Score: 167.9 bits (424), Expect = 6.300e-38 Identity = 95/240 (39.58%), Postives = 134/240 (55.83%), Query Frame = 0 Query: 161 EMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395 ++ +Y+D D +++KP D R+ Q + E + P + K R H LD ATSG+ +A N+ AAA LF +R VKK YLA+V GHV + F+D PI+ DP +FRM I P GK AQT++ VL +GY T + G PV+K+ L PI+GRRHQLR+H +GH IVGD ED T+R+MLHAH++ LP+ ++L + DPF L++ Sbjct: 3 DLTIKVIYRDDDWFIIDKPYDCRI---QNYANAKDPSVESLLKEQF-------PDISKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHV-----EEDEYFVDQPIDDDPNHEFRMAIIPTGKPAQTKIRVLQRGYYTYKEEKTGTEKTLPVTKVSLSPISGRRHQLRLHLKHIGHPIVGDFNYEDVYTDTFRMMLHAHQIILPLPGREELKVVANDPFDELVT 227
BLAST of NO01G03000 vs. NCBI_GenBank
Match: CEP09287.1 (hypothetical protein [Parasitella parasitica]) HSP 1 Score: 165.6 bits (418), Expect = 3.100e-37 Identity = 97/235 (41.28%), Postives = 130/235 (55.32%), Query Frame = 0 Query: 167 VYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLSS 396 +++D + ++NKP D R+ Q + E + P ++K R H LD ATSG+ +A N+ AAA LF ER VKK YLA+V GH + F+D PI DP DF+M I GK AQT++ VL +GY T G PVSK+ L PI+GRRHQLR+H LG+ IVGD ED T+R+MLHAH++ LP+S E++L DPF L+ S Sbjct: 9 IHRDENWFIINKPYDCRI---QNYANTIEPSVESLLKEQF-------PEIEKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRERAVKKTYLALVNGH-----AKEDAYFVDQPIGDDPNHDFKMAIVASGKTAQTKIQVLERGYYTFHEEKTGVEKTIPVSKVSLSPISGRRHQLRLHLKHLGYPIVGDFNYEDTYTDTFRMMLHAHQIILPLSKEQELKAVADDPFTNLVVS 228
BLAST of NO01G03000 vs. NCBI_GenBank
Match: GAN08940.1 (RNA pseudouridylate synthase domain-containing protein 1-like [Mucor ambiguus]) HSP 1 Score: 164.1 bits (414), Expect = 9.100e-37 Identity = 96/251 (38.25%), Postives = 137/251 (54.58%), Query Frame = 0 Query: 162 MNFSFVYKDGDLLVMNKPSDVRMD--VPQRDGGERKWPTEFTCSDWL-------DIPGLVD---PPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGDSYVED--WSTYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395 + +Y+D D +++KP D R+ +D + D + + L+ P + K R H LD ATSG+ +A N+ AAA LF +R VKK YLA+V GH+ + FID PI+ DP +FRM I P GK AQT++ VL +GY T + G PV+K+ L PI+GRRHQLR+H +GH IVGD ED T+R+MLHAH++ LP+ ++L + DPF L++ Sbjct: 4 LTIKVIYRDDDWFIIDKPYDCRIQNYANAKDPSGSYIVLNYMLDDVIHSTEKKNKVESLLKEQFPDISKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHI-----KEDEYFIDQPIDDDPNHEFRMAIVPTGKPAQTKIRVLQRGYYTYKEDKTGIEKTLPVTKVSLSPISGRRHQLRLHLKHIGHPIVGDFNYEDEYTDTFRMMLHAHQIILPLPDREELKVMADDPFSELVA 249
BLAST of NO01G03000 vs. NCBI_GenBank
Match: EPB82651.1 (hypothetical protein HMPREF1544_10597 [Mucor circinelloides f. circinelloides 1006PhL]) HSP 1 Score: 160.2 bits (404), Expect = 1.300e-35 Identity = 92/243 (37.86%), Postives = 141/243 (58.02%), Query Frame = 0 Query: 161 EMNFSFVYKDGDLLVMNKPSDVRMDVPQRDGGERKWPTEFTCSDWLDIPGLVD---PPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPTSDFRMRIGPDGKAAQTQVHVLGQGYLTLQ----GPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAEKQLHLETPDPFIGLLS 395 ++ +++D D +++KP D R+ ++ PT + L+ P ++K R H LD ATSG+ +A N+ AAA LF +R VKK YLA+V GHV + F+D PI+ DP DFRM + P GK AQT++ VL +G+ T + G PV+K+ L PI+GRRHQLR+H +G+ IVGD +Y +++ T+R+MLHAH++ LP+ ++L + DPF L++ Sbjct: 3 DLTIKVIHRDDDWFIIDKPYDCRI----QNYANASDPT---------VESLLKEQFPDINKFRNVHQLDYATSGVFVLALNKKAAAAASKLFRDRTVKKTYLALVNGHV-----KEDEYFVDQPIDDDPHHDFRMAVLPTGKPAQTKIRVLQRGHYTYKEEKTGAEKTIPVTKVSLSPISGRRHQLRLHLKYIGYPIVGDFNYENEYTDTFRMMLHAHQIILPLPGREELKVVADDPFTELVT 227
BLAST of NO01G03000 vs. NCBI_GenBank
Match: XP_003081218.2 (Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri] >CEF99063.1 Pseudouridine synthase, RsuA/RluB/C/D/E/F [Ostreococcus tauri]) HSP 1 Score: 158.3 bits (399), Expect = 5.000e-35 Identity = 110/312 (35.26%), Postives = 152/312 (48.72%), Query Frame = 0 Query: 87 SAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYK--DGDLLVMNKPSDVRMDVPQ------RDGG-------ERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAE 379 S+ G T +L G +R V L + D E R+ +L F+ G E A L Q LE + VY+ D + +NKP VR+D P+ DG E +W + +C DWL+ P RFCH LD+ATSG++ A ++AAA LF +RK KK YLAVV+G + A + KDP FR R+ + GKA++T+ VL +GY TL G H V+ L KP+TGRRHQ+RVH G I+GD +Y S ++R+ LHA +L +P E Sbjct: 14 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLN----ATYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGWPERDEWTTT-----AKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPFPDE 316
BLAST of NO01G03000 vs. NCBI_GenBank
Match: OUS48913.1 (pseudouridylate synthase, 23S RNA-specific [Ostreococcus tauri]) HSP 1 Score: 158.3 bits (399), Expect = 5.000e-35 Identity = 110/312 (35.26%), Postives = 152/312 (48.72%), Query Frame = 0 Query: 87 SAAAQGSTVEEVLQLAGVPSRNVARALEAFIGLQDCDPHAETLRRLHHLNFIIEQGVYSFEEAMELISTQSRFLEMNFSFVYK--DGDLLVMNKPSDVRMDVPQ------RDGG-------ERKWPTEFTCSDWLDIPGLVDPPLDKKRFCHNLDSATSGILCVARNQAAAARVVDLFAERKVKKEYLAVVFGHVAAPPGSNNTIFIDAPIEKDPT--SDFRMRIGPD-GKAAQTQVHVLGQGYLTLQGPHYNAPVSKLLLKPITGRRHQLRVHTLSLGHGIVGD-SYVEDWS-TYRLMLHAHKLFLPISAE 379 S+ G T +L G +R V L + D E R+ +L F+ G E A L Q LE + VY+ D + +NKP VR+D P+ DG E +W + +C DWL+ P RFCH LD+ATSG++ A ++AAA LF +RK KK YLAVV+G + A + KDP FR R+ + GKA++T+ VL +GY TL G H V+ L KP+TGRRHQ+RVH G I+GD +Y S ++R+ LHA +L +P E Sbjct: 47 SSVEHGETAASLLVKRGADARAVEEMLLRHPEVNAYDCATEIAPRMSYLEFLERGGELGSETAAALALRQPGILERKYETVYECFDKAYIAVNKPFAVRLDTPRGWTESDADGNVTEKKRFEPRWEGDASCEDWLN----ATYPNMHHRFCHQLDTATSGVILTAHTKSAAAAAAKLFRDRKAKKTYLAVVYGWPERDEWTTT-----AKLGKDPNCPKGFRERVDEEGGKASETRFKVLRRGYCTLDGAHRGIKVTLLQCKPVTGRRHQIRVHLQHSGFPILGDIAYYSGVSDSFRMFLHALELVMPFPDE 349 The following BLAST results are available for this feature:
BLAST of NO01G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G03000 ID=NO01G03000|Name=NO01G03000|organism=Nannochloropsis oceanica|type=gene|length=1298bpback to top protein sequence of NO01G03000.1 >NO01G03000.1-protein ID=NO01G03000.1-protein|Name=NO01G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=402bpback to top Synonyms
Publications
|