NO01G02970, NO01G02970 (gene) Nannochloropsis oceanica

Overview
NameNO01G02970
Unique NameNO01G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1944
Alignment locationchr1:778533..780476 +

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Properties
Property NameValue
DescriptionZinc cchc domain containing 17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:778533..780476 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR003029Rbsml_prot_S1_RNA-bd_dom
IPR022967S1_dom
Homology
BLAST of NO01G02970 vs. NCBI_GenBank
Match: EWM29226.1 (zinc cchc domain containing 17 [Nannochloropsis gaditana])

HSP 1 Score: 237.7 bits (605), Expect = 8.700e-59
Identity = 133/218 (61.01%), Postives = 153/218 (70.18%), Query Frame = 0
Query:  105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERD-QARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQLAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTPAWMTKQGLSLDDA 322
            +P +GKIYEGEVVK ESYGAFVRIPGFQRQGLVHISQL++GRTE+VDDV+ TGHKVFVKVVEV  +  G A +VSLSMRYA Q TG+DLDP NE  +RD       XXXXXXLQP GKIE+GA++N  C KC V GHMPFECRG+ +GKSYGLIGDDEF+ALTRQ                                    +LTPAWM++QGLSL+ A
Sbjct:  132 IPELGKIYEGEVVKVESYGAFVRIPGFQRQGLVHISQLQKGRTEKVDDVIDTGHKVFVKVVEVTNE--GGAPRVSLSMRYAHQSTGQDLDPGNEDLKRDXXXXXXXXXXXXXLQPSGKIEVGAIVNTTCSKCKVRGHMPFECRGLPDGKSYGLIGDDEFAALTRQ--------------PNQQKPSLLPLTTTAGRGRGRAMLTPAWMSRQGLSLEGA 333          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_022091743.1 (nucleolar protein of 40 kDa-like [Acanthaster planci])

HSP 1 Score: 126.3 bits (316), Expect = 2.800e-25
Identity = 67/160 (41.88%), Postives = 99/160 (61.88%), Query Frame = 0
Query:  106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSAL 266
            P +  I++GEVV  +SYGAFV IPGF + GLVH +Q+   R E V +V+  G +VF KV+ +   G  + SK+SLSM++ DQ  G+DLDP+  + ++++ R         +QP  KIELGAV N  C KCG  GH+  +C  +   K+Y L+ D++ + L
Sbjct:   21 PELYSIFDGEVVSIQSYGAFVNIPGFHKNGLVHKTQISSARVEDVSEVLALGDRVFCKVISL---GEDDNSKISLSMKFVDQGQGKDLDPNLVQMKQEEQR--RKKGRTFVQP--KIELGAVFNTVCKKCGTKGHLAKDCFQMPGTKTYDLLPDEDDAVL 173          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_019628516.1 (PREDICTED: nucleolar protein of 40 kDa-like [Branchiostoma belcheri])

HSP 1 Score: 118.2 bits (295), Expect = 7.700e-23
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 0
Query:  105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262
            LP +  I++GEVV  + YG F++IPG ++ GLVH SQ+   R E   +VV  G +V+ KV+ + E G G   K+SLSM+  +Q  G DLDP+N     ++ R            R KI LGAV+N  C KCG  GHM  +C    +GK Y L+ +++
Sbjct:   19 LPAMHTIFQGEVVSLQPYGCFIKIPGCKKNGLVHKSQMSASRVEDPKEVVDMGDRVYCKVISLGEGGNG---KISLSMKVVNQGDGHDLDPNNVAISMEEQR----KRNPKSYERQKITLGAVLNTTCRKCGGKGHMAQDCFSGADGKKYELLPEED 168          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: CBN75014.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.9 bits (294), Expect = 1.000e-22
Identity = 64/160 (40.00%), Postives = 94/160 (58.75%), Query Frame = 0
Query:  108 VGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQAR----GGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFEC--RGVVEGKSYGLIGDDE 262
            V  +++GEVVKTE++GAF+++ G+++ GLVH SQ+   R E V DV   G  V+ KV+EV +       +++LSM+  +Q  G+DLDP N + E D  R    GGG         R  ++L AV N  C KCGV GH+  +C  RG   GK Y L+ +++
Sbjct:  237 VFSVHKGEVVKTETFGAFIKLDGYRKHGLVHCSQMASYRVEDVTDVCKVGDTVYAKVIEVTDGADPREQRIALSMKLVNQADGKDLDPSNAEAETDAQRKRPAGGG--------DRAPVQLEAVFNTTCTKCGVHGHLSIDCFSRG---GKKYELVDEED 385          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_010795154.1 (PREDICTED: LOW QUALITY PROTEIN: nucleolar protein of 40 kDa [Notothenia coriiceps])

HSP 1 Score: 117.9 bits (294), Expect = 1.000e-22
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 0
Query:  105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269
            LP +  I +GEVV  ++YGAFVR+PG++++GLVH+S++   R E   ++V  G K+++KV+  + Q  G+  K+S SM+  +Q TG+DLDP+N   ++DQ R              +I L AV+N  C KCG  GH   +C     G  Y L+ ++E +A  +Q
Sbjct:   17 LPPLHSIAKGEVVSVQTYGAFVRLPGYKKEGLVHVSEMSASRVENASEIVDMGEKIWIKVIGREIQ--GDKVKLSFSMKAVNQGTGQDLDPNNVNGDQDQRR----RRKFRDHTGNRITLEAVLNTTCSKCGCKGHFTKDCFS-TPGLQYALVPEEEDAASRQQ 173          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_011666385.1 (PREDICTED: uncharacterized protein DDB_G0283697 isoform X2 [Strongylocentrotus purpuratus])

HSP 1 Score: 117.1 bits (292), Expect = 1.700e-22
Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = 0
Query:  106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQL-REGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269
            P +  IY+GEV   +SYGAFV++ G+++ GLVH SQ+ R  R E V +V+  G  V+ KV+ +   G  E  K+SLSM+  +Q  G+DLDP+  + ++++ R           P+ KIELGAV+N  C KCG +GH+  +C      K+Y LI D + S L+ +
Sbjct:    5 PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKVISL---GEDEEMKISLSMKVVNQDNGQDLDPNMVQTKQEEQR----RKKGSYVPKPKIELGAVLNTTCRKCGTVGHLSKDCFYTPGEKTYDLIPDIDVSMLSHK 161          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_787656.3 (PREDICTED: DEAD-box ATP-dependent RNA helicase 42 isoform X1 [Strongylocentrotus purpuratus])

HSP 1 Score: 117.1 bits (292), Expect = 1.700e-22
Identity = 65/164 (39.63%), Postives = 98/164 (59.76%), Query Frame = 0
Query:  106 PTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQL-REGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269
            P +  IY+GEV   +SYGAFV++ G+++ GLVH SQ+ R  R E V +V+  G  V+ KV+ +   G  E  K+SLSM+  +Q  G+DLDP+  + ++++ R           P+ KIELGAV+N  C KCG +GH+  +C      K+Y LI D + S L+ +
Sbjct:    5 PALYNIYKGEVASIQSYGAFVKLDGYKKNGLVHKSQISRTKRVEDVSEVLSVGDIVWSKVISL---GEDEEMKISLSMKVVNQDNGQDLDPNMVQTKQEEQR----RKKGSYVPKPKIELGAVLNTTCRKCGTVGHLSKDCFYTPGEKTYDLIPDIDVSMLSHK 161          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_013404653.1 (nucleolar protein of 40 kDa [Lingula anatina])

HSP 1 Score: 116.7 bits (291), Expect = 2.200e-22
Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 0
Query:  105 LPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQ 269
            LP +  I++GE+   + YGAFV+IPG ++QGLVH SQL + R +   +VV  G  V+ KV+ +      E  K+ LSM+  +Q TG+DLDP+  +  +D  R         +  + KIELGAV++  C KCG  GH+  +C  +   KSY L+ +D    + ++
Sbjct:   20 LPDLYSIFKGEISSVQPYGAFVKIPGLKKQGLVHKSQLSQSRVDNPAEVVDVGESVYCKVITL------ENDKIGLSMKVVNQGTGKDLDPNQVQSSQDAQR----RKQGFISKQDKIELGAVLDTTCRKCGGKGHLSQDCFHIPGQKSYELLTEDPLETVIKE 173          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_006811783.1 (PREDICTED: nucleolar protein of 40 kDa-like isoform X1 [Saccoglossus kowalevskii])

HSP 1 Score: 116.3 bits (290), Expect = 2.900e-22
Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 0
Query:  104 TLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262
            T+P +  ++ GEV   + YGAF++IP  ++ GLVH S +   R E V DV+  G KV+ KV+ + ++G  +  K+SLSM+  +Q  G DLDP+  +  +D+ R              KIELG V+N  C KCG  GH+  +C  +  GKSY L+ +D+
Sbjct:   12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKV-KISLSMKNINQDDGTDLDPNQVQLVQDEKR----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDD 164          
BLAST of NO01G02970 vs. NCBI_GenBank
Match: XP_006811784.1 (PREDICTED: nucleolar protein of 40 kDa-like isoform X2 [Saccoglossus kowalevskii])

HSP 1 Score: 116.3 bits (290), Expect = 2.900e-22
Identity = 60/158 (37.97%), Postives = 91/158 (57.59%), Query Frame = 0
Query:  104 TLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGXXXXXXLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVEGKSYGLIGDDE 262
            T+P +  ++ GEV   + YGAF++IP  ++ GLVH S +   R E V DV+  G KV+ KV+ + ++G  +  K+SLSM+  +Q  G DLDP+  +  +D+ R              KIELG V+N  C KCG  GH+  +C  +  GKSY L+ +D+
Sbjct:   12 TVPELYSVFAGEVTSIQQYGAFIKIPRCKKNGLVHKSHISNSRVEDVSDVLALGDKVYCKVISLGDEGDDKV-KISLSMKNINQDDGTDLDPNQVQLVQDEKR----RKKSGTYIPEKIELGVVLNTTCRKCGCKGHLAQDCFKIPGGKSYELLPEDD 164          
The following BLAST results are available for this feature:
BLAST of NO01G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM29226.18.700e-5961.01zinc cchc domain containing 17 [Nannochloropsis ga... [more]
XP_022091743.12.800e-2541.88nucleolar protein of 40 kDa-like [Acanthaster plan... [more]
XP_019628516.17.700e-2340.13PREDICTED: nucleolar protein of 40 kDa-like [Branc... [more]
CBN75014.11.000e-2240.00conserved unknown protein [Ectocarpus siliculosus][more]
XP_010795154.11.000e-2237.80PREDICTED: LOW QUALITY PROTEIN: nucleolar protein ... [more]
XP_011666385.11.700e-2239.63PREDICTED: uncharacterized protein DDB_G0283697 is... [more]
XP_787656.31.700e-2239.63PREDICTED: DEAD-box ATP-dependent RNA helicase 42 ... [more]
XP_013404653.12.200e-2237.20nucleolar protein of 40 kDa [Lingula anatina][more]
XP_006811783.12.900e-2237.97PREDICTED: nucleolar protein of 40 kDa-like isofor... [more]
XP_006811784.12.900e-2237.97PREDICTED: nucleolar protein of 40 kDa-like isofor... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008028NSK008028Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02970.1NO01G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576850gene_297Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100203g5gene1400Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02970.1NO01G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02970 ID=NO01G02970|Name=NO01G02970|organism=Nannochloropsis oceanica|type=gene|length=1944bp
ATGACGGCATCCTCCTTTTCTTCCTTTAAAGCTCATTCCCACTACCACAG
CTTATCTTCAAAACAATTCACTACCACCAACAGGAAGCTAAGCAAGCTCC
GCTTTTATTTGGGTGTTGCCTTCCTGACGCAATGgtaagtatagctagca
tctcgcatccctctccctcgaaaatcgatacgttcctcagcatcatcaca
aaccacgagtctcacgcccgcctacctgccaaccaccacgtcacagccgc
gctcacggtctgtctctcgatcacctcccgccagaaggaagggtacaacg
aggcgtcgctcatttagtgacgatgatagccgcagtccaccaccgaagcg
aacttttaggcggaggtcacgttctcgatctcggtctggttactcgcgct
ctgcaagacgcgaccggagccgcagtggggaccgtgacaatcgtcccaac
cactacagCCGCTCGCCCTCTCCATCCCATCGCTGGCGCTATTATTCCCG
TTCCCGCTCTTCTCCTCGCCATCGCGATGATCAACGATCTGGAGCAGTAG
GAAGGAGAGGAGAAGATTACGGTCATGGAGGAAGTGGGGGAGGAAGGGGG
GCAGGAGCAGGAGGAGGAGGTGAAGGGCCGGGAACGCTGCCAACTGTAGG
CAAAATATATGAAGGGGAGGTAGTCAAGACTGAGTCGTATGGAGCTTTTG
TGCGCATTCCCGGCTTTCAACGTCAGGGACTCGTACACATCTCTCAATTA
CGCGAGGGACGAACGGAGAGAGTGGATGACGTGGTAGTGACAGGCCATAA
GGTCTTTGTCAAGGTGGTGGAGGTGAAGGAGCAAGGGCCTGGCGAAGCAT
CCAAGGTCAGTTTATCGATGCGCTATGCCGACCAAAAAACAGGGGAGGAC
CTGGACCCGCACAACGAGAAATTTGAGAGGGACCAAGCTCGAGGGGGAGG
TGGACGGGGAGGAGGAGGGTTGCAGCCACGCGGTAAGATTGAGTTGGGTG
CGGTGATAAATAATAAGTGTGGCAAGTGTGGGGTTATGGGACATATGCCG
TTTGAATGTCGGGGGGTGGTGGAAGGGAAAAGCTATGGATTGATTGGGGA
TGACGAGTTTTCGGCCTTGACCCGACAGCTTGCCGCGGCCCCACCTCCTC
GCCCACTTCCCCCTTCCGCTTCTTATGGTGGTAATGGTGATGGCTTTGGT
GGTGGAGGAGCGGCAGGTCGAGGACGCGGACGGGCACTCTTGACACCTGC
GTGGATGACAAAACAGGGTTTGTCGCTTGACGACGCTACTCCTGCACGGG
CCTCGTCTCCTCCTCCTCCCTCGAGCAGCAGCAGGCGTTCTCGTTTCACG
GACGCACCGGCACCGGCACCGCCGCCCCCACCTCTTTCTTCTTCATCTTC
TTCTTATGACCGGCGTGGTGATCGGGGGGGTTTGAATGGGCACGGTGGTG
TCGTCAGTGGAGGTGTTGGGAGTGGCGGTGGTAGTACGGCTGCGCTCATG
GCCGGTCGCGGTCGGGGGCGTGCCTTGACGCTCCCTGCGTGGATGACTGC
TGGTGGTGGTGATGGTAGCGGTCCTGTTGCTTTGGAGGAAGGCGGGTTGA
ACCAGCGCGGAGTGAAGGATGCCTCGGCTTCGCGGACTAAGAAGAAGACG
TCGAAGCGAAGAAGCCAGAGCAGGGGTTATGATAGCGGGTCCAGTGGTCG
AAGTGATTCGAGATCGCGGGGCGGACGCAAGAAGAAGGAGAAAAAGAAGA
AGCACCTCAAGGACAAGGAAAGGGAGAAGGAAAAGAAGAAGGGGGAGAAG
AAGAAGAAGCACAAGCACCATCGGGACAGCCGCAGTCGGAGCCGTGGCAG
GCGTCGTTCGCTCTCTCCGGCACCGAAGTTTCGTAGTGCCAGTGAGGCAC
GTCGCATTCTGAAGGCGTACGAAGAGAAGCATGGGCGCAAATAG
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protein sequence of NO01G02970.1

>NO01G02970.1-protein ID=NO01G02970.1-protein|Name=NO01G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MTASSFSSFKAHSHYHSLSSKQFTTTNRKLSKLRFYLGVAFLTQCRSPSP
SHRWRYYSRSRSSPRHRDDQRSGAVGRRGEDYGHGGSGGGRGAGAGGGGE
GPGTLPTVGKIYEGEVVKTESYGAFVRIPGFQRQGLVHISQLREGRTERV
DDVVVTGHKVFVKVVEVKEQGPGEASKVSLSMRYADQKTGEDLDPHNEKF
ERDQARGGGGRGGGGLQPRGKIELGAVINNKCGKCGVMGHMPFECRGVVE
GKSYGLIGDDEFSALTRQLAAAPPPRPLPPSASYGGNGDGFGGGGAAGRG
RGRALLTPAWMTKQGLSLDDATPARASSPPPPSSSSRRSRFTDAPAPAPP
PPPLSSSSSSYDRRGDRGGLNGHGGVVSGGVGSGGGSTAALMAGRGRGRA
LTLPAWMTAGGGDGSGPVALEEGGLNQRGVKDASASRTKKKTSKRRSQSR
GYDSGSSGRSDSRSRGGRKKKEKKKKHLKDKEREKEKKKGEKKKKHKHHR
DSRSRSRGRRRSLSPAPKFRSASEARRILKAYEEKHGRK*
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Synonyms
Publications