NO01G02950, NO01G02950 (gene) Nannochloropsis oceanica

Overview
NameNO01G02950
Unique NameNO01G02950
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2175
Alignment locationchr1:774547..776721 +

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Properties
Property NameValue
DescriptionEpsin-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:774547..776721 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008942ENTH_VHS
IPR013809ENTH
Homology
BLAST of NO01G02950 vs. NCBI_GenBank
Match: CBJ48363.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.3 bits (207), Expect = 1.400e-12
Identity = 70/255 (27.45%), Postives = 113/255 (44.31%), Query Frame = 0
Query:  251 REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEM-----KVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVD--NEASAFEGADRAEV 499
            RE K   S + E ++LKATRPDD    P+ + A++  T       ++    N Y   +RK+W+KMA+ +WR  AKALY+ H    +   +     K+  A +      + K  YFD+  I   DV       E       F+  Y+ +VL+R   F   F E+      ++G  ++        +     +++ G +C  L   EE +  + +  V  VA D+ DL  +   +L +     N  SA+    RAEV
Sbjct:  226 REAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPT------VEMPKEFNVYLPVVRKLWSKMADKEWRVSAKALYILHRFAADGSIEHASNLKESVAVLRTHHDSRRKVNYFDMDTI--CDVKAPSWSGEDVAPMAEFLQGYADFVLRRTTQFGPGFAELLDAFTMLLGGGEV--------MTAVAGLVSVGSKCCHL--HEEQEGAIAVAAVVQVAHDIRDLVEVCAAQLDYLAREWNARSAY----RAEV 458          
BLAST of NO01G02950 vs. NCBI_GenBank
Match: AFA52585.1 (hypothetical protein [Vaucheria litorea])

HSP 1 Score: 75.5 bits (184), Expect = 6.700e-10
Identity = 69/252 (27.38%), Postives = 110/252 (43.65%), Query Frame = 0
Query:  238 KVQGMATKGKKLTREMKEYFSGDFESMLLKATRPDD----ARPPPEFIGAILDATGTFHRDEDVTSN--SNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFT----SKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALL----EGEEEADSEVTLMCVELVARDVYDLFRLF 476
            K QG+  K KKL RE K   S D E  +LKATRP+D     +     IGA L        +  V  N    PY + L K+W +M  +DWRT  K+LY+ H L  E   +    + + + ++ R   +      F+   I           +    ++  FI + +K+V  R +  +    S F EM  +    +  + ++  +   +K +  G+EC+ L      E EADS +      L+A D   L+ L+
Sbjct:   65 KKQGLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLEL-RASVQPPP---FEPKQIKR---------SPQNNEKMKFIKKQAKFVFNRIEQISPDINSLFSEMCAM--EKVSTETILAWMKNLQKAIEVGIECSGLLNDIGSEIEADSSL------LIANDTVKLWELY 295          
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_002288953.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94389.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.0 bits (175), Expect = 7.400e-9
Identity = 77/310 (24.84%), Postives = 115/310 (37.10%), Query Frame = 0
Query:  251 REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEMKVIG----------------------ERDIIPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKL 539
            RE+K   S + E ++LKATRPD+     + +  ++  T       D+      Y   LRK+W KMAE D RT  K++                                                              AF+SRY+ YVL RA+TF   F E+ + G                       +   P      L  A+ VL +GL C L +GEE   SE T MCVE VA D+  L       +  A+  E       D+A V++  + +        P+ + F+  T+  L  YG+ L +++
Sbjct:  245 REVKGLTSSELEQVMLKATRPDETPVKTKHVERLVGVTYQISGKYDI------YDAVLRKLWNKMAEKDIRTKLKSV--------------------------------------------------------------AFLSRYAHYVLTRAQTFGGVFNEISLAGMPXXXXXXXXXXXXXXXXXXXXTKPKNPPLCEEHLKFAQMVLKAGLACTLHDGEE---SESTAMCVERVAADLMGLTA----AVAIALKRELKQTNIDDKALVKQWCEFYSEEL---LPDTKKFVKKTSSKLDAYGLYLPSRM 476          
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_005708985.1 (hypothetical protein isoform 1 [Galdieria sulphuraria] >EME32465.1 hypothetical protein isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 68.6 bits (166), Expect = 8.200e-8
Identity = 84/356 (23.60%), Postives = 137/356 (38.48%), Query Frame = 0
Query:  240 QGMATKG---KKLTREMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDAT------------------------------------------------GTFH----RDEDVTSNSNPYRVT---LRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGC-----KKTKCRY----FDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEMKVIGERDI-IPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLL 528
            QG  T G   K+LTR++    S D ES +LKAT+P  +RP  + +  +L AT                                                  F+    +D   +   N +  T   LRK+W KM   DWR   KAL + H L+ E    D  + K    +M R G       K   +Y     D+  +NA          EA +   AF+ +Y +YV +R + F     +  +    ++ I K+ +G+    E+ L     C +    ++A   V    +E +A DV  L+   +  L+ +VD   +  +   ++ ++   D F        PEV+HF+  T   +
Sbjct:   47 QGKVTIGNFKKRLTRKVTAALSSDLESAVLKATKPKYSRPKEKHVQFLLQATKGCSFDDYEQRSARLTKVLEQTRSGSSRPGLNNLLTDEKFPQREKSQSSLFNLDGLQDRHTSREKNSFIRTCDVLRKLWKKMQAEDWRIATKALVVLHRLINESSEGDAHVIKMQLLQMSRYGVDSSLFPKNTSQYSKIVVDIGNLNATFEDHSRNRPEAPV-CSAFLKKYGRYVSRRLEVFQFLSSQSTIYSFNELGILKENMGENSLGEETL-----CTI----DKAVEVVIAPALEQIASDVTYLYNFLNRILKLSVDLVNN--KNLSKSSLKIAYDDF----VRLEPEVRHFVKYTCSTI 386          
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_005703749.1 (hypothetical protein Gasu_52100 [Galdieria sulphuraria] >EME27229.1 hypothetical protein Gasu_52100 [Galdieria sulphuraria])

HSP 1 Score: 67.0 bits (162), Expect = 2.400e-7
Identity = 80/339 (23.60%), Postives = 137/339 (40.41%), Query Frame = 0
Query:  247 KKLTREMKEYFSGDFESMLLKATRPDDARPPPEFIGAILD-ATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTF-----------------TSKFEEMKVIGERDI--IPKDLVGQ-LGKAEKVLASGLECALLEGEEEAD----------SEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRT--KLEPVHRFDEEDEIAA 553
            K++TR +K   S + E + LK T+P    P   ++  I+   TG      DV + S+     +RK+W K    DWR   KALY+F  + R+   +D   +K+ +    +         + + A +   D     +  E       +I  Y+ Y+  R   F                   +F      G+R +  +PK+ + + L + +++L   L    LE E +            ++VT++ +  VA D+ DLF+  H+ L   ++N    F   D     +  D + A Y    P VQ +L    +     GI L +  K  P+   D+ DE  A
Sbjct:  130 KRVTRHVKAVLSSNLEGLTLKVTKPKYKAPREVYVEQIVHLLTGLGSPGADVRTCSD----IVRKLWNKCQIQDWRVCCKALYVFERIFRDLSFEDSVSFKR-FLLQRQSYVLHAGETFVNFATLTRFDDSNPASRPEGP-QVSVYIRSYAAYLSFRLHCFEKMQQLTGKNDAKPGKMIDEFGYSSEAGKRVVADLPKNTIFETLSQMQELLDEILLKVRLEDENKDSWFSTVKGVLVNDVTVISLYPVACDLLDLFKSIHENLASLLEN----FFDLDIQNASRARDIY-ALYTLQVPRVQDYLEIAKEQFRTRGIPLSSDLKYHPLDLLDDMDEYIA 457          
The following BLAST results are available for this feature:
BLAST of NO01G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 15
Match NameE-valueIdentityDescription
CBJ48363.11.400e-1227.45conserved unknown protein [Ectocarpus siliculosus][more]
AFA52585.16.700e-1027.38hypothetical protein [Vaucheria litorea][more]
XP_002288953.17.400e-924.84predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_005708985.18.200e-823.60hypothetical protein isoform 1 [Galdieria sulphura... [more]
XP_005703749.12.400e-723.60hypothetical protein Gasu_52100 [Galdieria sulphur... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008031NSK008031Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02950.1NO01G02950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576843gene_294Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100203g3gene1402Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02950.1NO01G02950.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02950 ID=NO01G02950|Name=NO01G02950|organism=Nannochloropsis oceanica|type=gene|length=2175bp
ATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTTGCCCTAGTGCTGCT
TATGCTGCTGAATGATGCCAAGAAGGTGGGGACATCGCGCAGTAGTGGTT
TGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGgtacgcaggagggaat
agatggggcggggtggtcggaatgcgtacggatacttaacaataaggaga
agaccaagcgaccgtggagatggcactccacccgcgcttgcacgtgcggc
agatagtgatacgcttacgcaaaagaagggtgtgcggccctcctctcgtt
ttcgttcgtgaggtcggaagagctttttgatgatgatgagcggcttagac
caccaaccaacgacttaccctccttcttaacacatgtacaatacacagCA
GCAAGAAAGTGAGCAAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGG
CAACCACCAGTGGAGATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGA
CGAGGATGAGGAGGAGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCG
GTGGCGGCCGGGCGGCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGT
TCAAAGTCCCGGCATAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGA
GGAGGAAGATGAGGACGAGGACTATTTTGACGATGAGGAGGAGGACGAGG
AGGATGGGGAGGAGGAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAG
CCAGGAGGTGTAAAGAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAA
GAAGGGCAAGGGCAGCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAG
GGCGGTATGCAGGAGAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTAC
AAGCCCGCCGGGTACGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAAT
GCGCAATGTTTTCTTCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGG
GGAAGAAATTGACAAGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAG
AGCATGCTCTTAAAGGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGA
ATTCATCGGTGCGATCCTAGATGCAACTGGCACCTTTCATCGAGACGAGG
ATGTGACGAGTAATAGCAATCCATACCGTGTTACACTCCGGAAGATCTGG
GCGAAGATGGCGGAAAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTT
GTTTCATGTCTTGCTCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATA
AGAAAGTTTACGCAAAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGT
CGTTATTTTGACGTGGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGT
AGCAGGAGCAGAAGCTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATA
GCAAATATGTCTTGCAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAA
ATGAAGGTGATTGGCGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCA
GTTGGGGAAGGCGGAAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGC
TGGAGGGGGAGGAGGAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAG
TTGGTCGCAAGGGACGTCTACGATTTATTCAGGCTCTTTCACGACAAGCT
CCGCTGGGCTGTGGATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAG
CAGAAGTCCGCAAAGTTCTTGATCGCTTCAAGGCAAGCTACGCGACACAC
TACCCGGAAGTTCAGCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTT
ATATGGGATTAGGCTACGCACGAAACTCGAACCTGTCCATCGATTTGATG
AAGAGGACGAGATAGCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCG
GCGGGGTTTGAGGAAGAGGGGGAGGGAATGATCGAAGCTGGGGTGGCAGG
TGGGGTGGGAGGGCAGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGG
GAGAAGCAAAATCAAACAGTCGAAGTAAGAGGAGAGTGATGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGATGATGAGGAAGATGATGA
GGATGAGGATGAGGATGAGGAGTAG
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protein sequence of NO01G02950.1

>NO01G02950.1-protein ID=NO01G02950.1-protein|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MAGLVRYLGLALALVLLMLLNDAKKVGTSRSSGLSGRAKSAAKASSKKVS
KSPVSSTGARRRQPPVEIYREEDEEEADDEDEEEDVMPPSSSRRSGGGRA
APDFGRRAMRAGSKSRHSYVEEEEEDYDEEEDEDEDYFDDEEEDEEDGEE
EDLRDRRRYGIKPGGVKKRRGAPPPPPSKKGKGSSSSRSRKSSRGGRYAG
ERGRKGGKALTYKPAGYGVAREPLQARVMRNVFFLTEKVQGMATKGKKLT
REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSN
SNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYA
KMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVL
QRAKTFTSKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEE
EADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRK
VLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKLEPVHRFDEEDEI
AAAEAAAQAAVAAGFEEEGEGMIEAGVAGGVGGQVEEVVVVEEDKGEAKS
NSRSKRRVMEEEEEEEEEEEEEDDEEDDEDEDEDEE*
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Synonyms
Publications