NO01G02950, NO01G02950 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G02950 vs. NCBI_GenBank
Match: CBJ48363.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 84.3 bits (207), Expect = 1.400e-12 Identity = 70/255 (27.45%), Postives = 113/255 (44.31%), Query Frame = 0 Query: 251 REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEM-----KVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVD--NEASAFEGADRAEV 499 RE K S + E ++LKATRPDD P+ + A++ T ++ N Y +RK+W+KMA+ +WR AKALY+ H + + K+ A + + K YFD+ I DV E F+ Y+ +VL+R F F E+ ++G ++ + +++ G +C L EE + + + V VA D+ DL + +L + N SA+ RAEV Sbjct: 226 REAKSLMSSEMEGVVLKATRPDDLPVKPKHLEALMRPT------VEMPKEFNVYLPVVRKLWSKMADKEWRVSAKALYILHRFAADGSIEHASNLKESVAVLRTHHDSRRKVNYFDMDTI--CDVKAPSWSGEDVAPMAEFLQGYADFVLRRTTQFGPGFAELLDAFTMLLGGGEV--------MTAVAGLVSVGSKCCHL--HEEQEGAIAVAAVVQVAHDIRDLVEVCAAQLDYLAREWNARSAY----RAEV 458
BLAST of NO01G02950 vs. NCBI_GenBank
Match: AFA52585.1 (hypothetical protein [Vaucheria litorea]) HSP 1 Score: 75.5 bits (184), Expect = 6.700e-10 Identity = 69/252 (27.38%), Postives = 110/252 (43.65%), Query Frame = 0 Query: 238 KVQGMATKGKKLTREMKEYFSGDFESMLLKATRPDD----ARPPPEFIGAILDATGTFHRDEDVTSN--SNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFT----SKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALL----EGEEEADSEVTLMCVELVARDVYDLFRLF 476 K QG+ K KKL RE K S D E +LKATRP+D + IGA L + V N PY + L K+W +M +DWRT K+LY+ H L E + + + + ++ R + F+ I + ++ FI + +K+V R + + S F EM + + + ++ + +K + G+EC+ L E EADS + L+A D L+ L+ Sbjct: 65 KKQGLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHRLAIETSAESYTHFHRTFLEL-RASVQPPP---FEPKQIKR---------SPQNNEKMKFIKKQAKFVFNRIEQISPDINSLFSEMCAM--EKVSTETILAWMKNLQKAIEVGIECSGLLNDIGSEIEADSSL------LIANDTVKLWELY 295
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_002288953.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94389.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 72.0 bits (175), Expect = 7.400e-9 Identity = 77/310 (24.84%), Postives = 115/310 (37.10%), Query Frame = 0 Query: 251 REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEMKVIG----------------------ERDIIPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKL 539 RE+K S + E ++LKATRPD+ + + ++ T D+ Y LRK+W KMAE D RT K++ AF+SRY+ YVL RA+TF F E+ + G + P L A+ VL +GL C L +GEE SE T MCVE VA D+ L + A+ E D+A V++ + + P+ + F+ T+ L YG+ L +++ Sbjct: 245 REVKGLTSSELEQVMLKATRPDETPVKTKHVERLVGVTYQISGKYDI------YDAVLRKLWNKMAEKDIRTKLKSV--------------------------------------------------------------AFLSRYAHYVLTRAQTFGGVFNEISLAGMPXXXXXXXXXXXXXXXXXXXXTKPKNPPLCEEHLKFAQMVLKAGLACTLHDGEE---SESTAMCVERVAADLMGLTA----AVAIALKRELKQTNIDDKALVKQWCEFYSEEL---LPDTKKFVKKTSSKLDAYGLYLPSRM 476
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_005708985.1 (hypothetical protein isoform 1 [Galdieria sulphuraria] >EME32465.1 hypothetical protein isoform 1 [Galdieria sulphuraria]) HSP 1 Score: 68.6 bits (166), Expect = 8.200e-8 Identity = 84/356 (23.60%), Postives = 137/356 (38.48%), Query Frame = 0 Query: 240 QGMATKG---KKLTREMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDAT------------------------------------------------GTFH----RDEDVTSNSNPYRVT---LRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGC-----KKTKCRY----FDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTFTSKFEEMKVIGERDI-IPKDLVGQLGKAEKVLASGLECALLEGEEEADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLL 528 QG T G K+LTR++ S D ES +LKAT+P +RP + + +L AT F+ +D + N + T LRK+W KM DWR KAL + H L+ E D + K +M R G K +Y D+ +NA EA + AF+ +Y +YV +R + F + + ++ I K+ +G+ E+ L C + ++A V +E +A DV L+ + L+ +VD + + ++ ++ D F PEV+HF+ T + Sbjct: 47 QGKVTIGNFKKRLTRKVTAALSSDLESAVLKATKPKYSRPKEKHVQFLLQATKGCSFDDYEQRSARLTKVLEQTRSGSSRPGLNNLLTDEKFPQREKSQSSLFNLDGLQDRHTSREKNSFIRTCDVLRKLWKKMQAEDWRIATKALVVLHRLINESSEGDAHVIKMQLLQMSRYGVDSSLFPKNTSQYSKIVVDIGNLNATFEDHSRNRPEAPV-CSAFLKKYGRYVSRRLEVFQFLSSQSTIYSFNELGILKENMGENSLGEETL-----CTI----DKAVEVVIAPALEQIASDVTYLYNFLNRILKLSVDLVNN--KNLSKSSLKIAYDDF----VRLEPEVRHFVKYTCSTI 386
BLAST of NO01G02950 vs. NCBI_GenBank
Match: XP_005703749.1 (hypothetical protein Gasu_52100 [Galdieria sulphuraria] >EME27229.1 hypothetical protein Gasu_52100 [Galdieria sulphuraria]) HSP 1 Score: 67.0 bits (162), Expect = 2.400e-7 Identity = 80/339 (23.60%), Postives = 137/339 (40.41%), Query Frame = 0 Query: 247 KKLTREMKEYFSGDFESMLLKATRPDDARPPPEFIGAILD-ATGTFHRDEDVTSNSNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYAKMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVLQRAKTF-----------------TSKFEEMKVIGERDI--IPKDLVGQ-LGKAEKVLASGLECALLEGEEEAD----------SEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRKVLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRT--KLEPVHRFDEEDEIAA 553 K++TR +K S + E + LK T+P P ++ I+ TG DV + S+ +RK+W K DWR KALY+F + R+ +D +K+ + + + + A + D + E +I Y+ Y+ R F +F G+R + +PK+ + + L + +++L L LE E + ++VT++ + VA D+ DLF+ H+ L ++N F D + D + A Y P VQ +L + GI L + K P+ D+ DE A Sbjct: 130 KRVTRHVKAVLSSNLEGLTLKVTKPKYKAPREVYVEQIVHLLTGLGSPGADVRTCSD----IVRKLWNKCQIQDWRVCCKALYVFERIFRDLSFEDSVSFKR-FLLQRQSYVLHAGETFVNFATLTRFDDSNPASRPEGP-QVSVYIRSYAAYLSFRLHCFEKMQQLTGKNDAKPGKMIDEFGYSSEAGKRVVADLPKNTIFETLSQMQELLDEILLKVRLEDENKDSWFSTVKGVLVNDVTVISLYPVACDLLDLFKSIHENLASLLEN----FFDLDIQNASRARDIY-ALYTLQVPRVQDYLEIAKEQFRTRGIPLSSDLKYHPLDLLDDMDEYIA 457 The following BLAST results are available for this feature:
BLAST of NO01G02950 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 15
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02950 ID=NO01G02950|Name=NO01G02950|organism=Nannochloropsis oceanica|type=gene|length=2175bpback to top protein sequence of NO01G02950.1 >NO01G02950.1-protein ID=NO01G02950.1-protein|Name=NO01G02950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bpback to top Synonyms
Publications
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