NO01G02860, NO01G02860 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02860
Unique Name	NO01G02860
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2362
Alignment location	chr1:740011..742372 -

Link to JBrowse

Properties


Property Name	Value
Description	Tubulin gamma chain

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:740011..742372 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule
GO:0000930	gamma-tubulin complex
GO:0005856	cytoskeleton
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process
GO:0031122	cytoplasmic microtubule organization
GO:0007020	microtubule nucleation
GO:0016043	cellular component organization

Vocabulary: **INTERPRO**
Term	Definition
IPR008280	Tub_FtsZ_C
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR003008	Tubulin_FtsZ_GTPase
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR000217	Tubulin
IPR002454	Gamma_tubulin

Homology

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: GAY06015.1 (tubulin gamma2 chain putative [Pythium insidiosum])

HSP 1 Score: 751.1 bits (1938), Expect = 2.400e-213
Identity = 369/460 (80.22%), Postives = 408/460 (88.70%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGGIGSSAAGGLP 514
            MP EIITLQ GQCGNQ+G EFWKQ+CAEHGISPDG++ D+AT+G+DRKDVFFYQADD+HYIPRALLMDLEPRV+N I NS YR LYN EN F++  GGGAGNNWASG+ Q E+++D LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGS+LLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNS+LTLKRLTLNADCVVVLDNTALNRIAVDRLRI NP+V+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS Y+ET HKV+GLMLANHT + SLF R++ QYD+++K NAF++NYRK+PMF D+L EFD SREVVQ L+DEYKA+E PDY +WG +   G+  + G P
Sbjct:    1 MPREIITLQTGQCGNQVGMEFWKQLCAEHGISPDGIVHDYATQGHDRKDVFFYQADDEHYIPRALLMDLEPRVVNMIQNSAYRNLYNPENYFVSKEGGGAGNNWASGYHQGEKHNDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSFLLENLNDHFPKKLIQTYSVFPNMSDFQSDVVVQPYNSVLTLKRLTLNADCVVVLDNTALNRIAVDRLRIDNPSVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKKGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYIETPHKVNGLMLANHTSIGSLFHRTLVQYDRLKKNNAFIDNYRKQPMFADNLSEFDESREVVQSLVDEYKASERPDYATWGLESAGGADVSMGDP 459

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_008898934.1 (tubulin gamma chain [Phytophthora parasitica INRA-310] >ETI55894.1 tubulin gamma chain [Phytophthora parasitica P1569] >ETK95679.1 tubulin gamma chain [Phytophthora parasitica] >ETL49063.1 tubulin gamma chain [Phytophthora parasitica] >ETM02113.1 tubulin gamma chain [Phytophthora parasitica] >ETM55361.1 tubulin gamma chain [Phytophthora parasitica] >ETN15367.1 tubulin gamma chain [Phytophthora parasitica INRA-310] >ETO84617.1 tubulin gamma chain [Phytophthora parasitica P1976] >ETP25671.1 tubulin gamma chain [Phytophthora parasitica CJ01A1] >ETP53685.1 tubulin gamma chain [Phytophthora parasitica P10297] >KUF77668.1 Tubulin gamma chain [Phytophthora nicotianae] >KUF96891.1 hypothetical protein AM588_10006346 [Phytophthora nicotianae])

HSP 1 Score: 748.0 bits (1930), Expect = 2.000e-212
Identity = 369/446 (82.74%), Postives = 400/446 (89.69%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQ GQCGNQIG EFWKQ+C EHGIS DG++QDFAT GNDRKDVFFYQADD+HYIPRALLMDLEPRVINSI  S +R LYN EN F++  GGGAGNNWASG+ Q EE+HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLT+KRL LNAD VVVLDNTALNRIAV+RLR+ NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVETAHKV+GLMLANHT + +LF + + QYD+++K  AF+ENYRKEPMF ++LDEFD++REVVQ L+DEYKA+E  DY +WG
Sbjct:    1 MPREIITLQAGQCGNQIGMEFWKQLCVEHGISADGIVQDFATSGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSISTSTFRNLYNPENFFVSKEGGGAGNNWASGYHQGEEHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQSDFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYVETAHKVNGLMLANHTSIGALFHKLLLQYDRLKKHGAFIENYRKEPMFAENLDEFDNAREVVQNLVDEYKASERADYATWG 445

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: OWZ01681.1 (Tubulin gamma chain [Phytophthora megakarya])

HSP 1 Score: 748.0 bits (1930), Expect = 2.000e-212
Identity = 369/446 (82.74%), Postives = 400/446 (89.69%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQ GQCGNQIG EFWKQ+C EHGIS DG++QDFAT GNDRKDVFFYQADD+HYIPRALLMDLEPRVINSI  S +R LYN EN F++  GGGAGNNWASG+ Q EE+HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLT+KRL LNAD VVVLDNTALNRIAV+RLR+ NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS Y+ETAHKV+GLMLANHT + +LF + + QYD+++K  AF+ENYRKEPMF ++LDEFDS+REVVQ L+DEYKA+E  DY +WG
Sbjct:    1 MPREIITLQAGQCGNQIGMEFWKQLCVEHGISEDGIVQDFATSGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSISTSTFRNLYNPENFFVSKEGGGAGNNWASGYHQGEEHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQSDFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYMETAHKVNGLMLANHTSIGALFHKLLLQYDRLKKHGAFIENYRKEPMFAENLDEFDSAREVVQNLVDEYKASERADYATWG 445

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_002899012.1 (tubulin gamma chain [Phytophthora infestans T30-4] >EEY62376.1 tubulin gamma chain [Phytophthora infestans T30-4])

HSP 1 Score: 746.5 bits (1926), Expect = 5.800e-212
Identity = 368/446 (82.51%), Postives = 400/446 (89.69%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQ GQCGNQIG EFWKQ+C EHGIS DG++Q+FAT GNDRKDVFFYQADD+HYIPRALLMDLEPRVINSI  S +R LYN EN F++  GGGAGNNWASG+ Q EE+HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLT+KRL LNAD VVVLDNTALNRIAV+RLR+ NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVETAHKV+GLMLANHT + +LF + + QYD+++K  AF+ENYRKEPMF ++LDEFD++REVVQ L+DEYKA+E  DY +WG
Sbjct:    1 MPREIITLQAGQCGNQIGMEFWKQLCVEHGISADGIVQEFATSGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSISTSTFRNLYNPENFFVSKEGGGAGNNWASGYHQGEEHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQSDFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYVETAHKVNGLMLANHTSIGALFHKLLLQYDRLKKHGAFIENYRKEPMFAENLDEFDNAREVVQNLVDEYKASERADYATWG 445

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_024574646.1 (tubulin gamma chain [Plasmopara halstedii] >CEG38277.1 tubulin gamma chain [Plasmopara halstedii])

HSP 1 Score: 741.5 bits (1913), Expect = 1.900e-210
Identity = 366/446 (82.06%), Postives = 398/446 (89.24%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQ GQCGNQIG EFWKQ+C EHGIS DG++QDFAT G+DRKDVFFYQADD+HYIPRALLMDLEPRVIN+I  S ++ LYN EN F++  GGGAGNNWASG+ Q E +HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLT+KRL LNAD VVVLDNTALNRIAV+RLR+ NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q S VRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVETAHKV+GLMLANHT + +LF + + QYD+++K  AF+ENYRKEPMF D+LDEFDS+REVVQ L+DEYKA+E  DY +WG
Sbjct:    1 MPREIITLQAGQCGNQIGMEFWKQLCVEHGISADGIVQDFATSGHDRKDVFFYQADDEHYIPRALLMDLEPRVINTINTSSFKNLYNPENFFVSKEGGGAGNNWASGYHQGEMHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQADFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSTVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYVETAHKVNGLMLANHTSIGALFHKLLLQYDRLKKHGAFIENYRKEPMFADNLDEFDSAREVVQNLVDEYKASERADYATWG 445

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_009531696.1 (hypothetical protein PHYSODRAFT_248690 [Phytophthora sojae] >EGZ14267.1 hypothetical protein PHYSODRAFT_248690 [Phytophthora sojae])

HSP 1 Score: 740.3 bits (1910), Expect = 4.200e-210
Identity = 367/442 (83.03%), Postives = 397/442 (89.82%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDY 496
            MP EIITLQ GQCGNQIG EFWKQ+CAEHGIS DG++QDFAT G+DRKDVFFYQADD+HYIPRALLMDLEPRVINSI  S +R LYN EN F++  GGGAGNNWASG+ Q E +HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLT+KRL LNAD VVVLDNTALNRIAV+RLR+ NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVETAHKV+GLMLANHT + +LF + + QYD+++K  AF+ENYRKEPMF ++LDEFDS+REVVQ L+DEYKA+E  DY
Sbjct:    1 MPREIITLQAGQCGNQIGMEFWKQLCAEHGISADGIVQDFATSGHDRKDVFFYQADDEHYIPRALLMDLEPRVINSISTSTFRNLYNPENFFVSKEGGGAGNNWASGYHQGESHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQSDFQSDVVVQPYNSLLTMKRLVLNADSVVVLDNTALNRIAVERLRVENPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYVETAHKVNGLMLANHTSIGALFHKLLLQYDRLKKHGAFIENYRKEPMFAENLDEFDSAREVVQNLVDEYKASERADY 441

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: GBG32401.1 (Tubulin gamma chain [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 729.9 bits (1883), Expect = 5.700e-207
Identity = 360/455 (79.12%), Postives = 403/455 (88.57%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQ--------SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDV-DPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQI SEFWKQI AEHGISPDG+LQ +A  G DRKDVFFYQADD+HYIPRA+LMDLEPRVIN I+NS YR L+N EN+F++ +GGGAGNNWASGH Q E+ H++LM+MIDREADGS+SLEGFVLCHSIAGGTGSGMGSYLLE+LNDHFPKKLIQTYSVFPN    +        SDVVVQPYNSLL+LKRL LNADCVVVLDNTALNRIA +RLRI+NP+V+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLM GYTPL +   QTSAVRKTTVLDVMRRL Q KN MVSASTR GCYISILNIIQGD+ DP+QVHK+LQRIRERKLVNFIPWGPASIQVALSRKS YVET +KVSG+MLANHTCM  LF R++  YD++RKRNAF+ENYR++PMF D+L+EFDS+RE+V  L +EY A+E PDY++WG
Sbjct:    1 MPREIITLQVGQCGNQIASEFWKQISAEHGISPDGVLQPYALNGTDRKDVFFYQADDEHYIPRAILMDLEPRVINGIMNSPYRHLFNSENIFVSKDGGGAGNNWASGHAQGEKLHEELMDMIDREADGSESLEGFVLCHSIAGGTGSGMGSYLLEKLNDHFPKKLIQTYSVFPNQSHGESSGVGVGTSDVVVQPYNSLLSLKRLALNADCVVVLDNTALNRIATERLRISNPSVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMCGYTPLTLQS-QTSAVRKTTVLDVMRRLLQAKNSMVSASTRRGCYISILNIIQGDIDDPSQVHKSLQRIRERKLVNFIPWGPASIQVALSRKSPYVETQNKVSGMMLANHTCMKELFSRAIRSYDRLRKRNAFLENYRQQPMFADTLEEFDSAREIVSSLAEEYHASESPDYVNWG 454

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: PIA49108.1 (hypothetical protein AQUCO_01300156v1 [Aquilegia coerulea])

HSP 1 Score: 704.1 bits (1816), Expect = 3.300e-199
Identity = 349/470 (74.26%), Postives = 400/470 (85.11%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRT-----GCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGGIGSSAAGGLPVSAVE 519
            MP EIITLQVGQCGNQIG EFWKQ+C EHGIS DG+L+DFAT+G DRKDVFFYQADD HYIPRALL+DLEPRVIN+I NSEYR LYN EN+F+A +GGGAGNNWASG+ Q E+  + +M+M+DRE DGSDSLEGFVLCHSIAGGTGSGMGSYLLE LND + KKL+QTYSVFPN  ++ SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALN+IAV+RL +TNPT  Q NSLVSTVM+ASTTTLRYPGYMNNDL+GL+ASLIPTPRCHFLMTGYTPL + + Q + +RKTTVLDVMRRL QTKNIMVS+  RT       YISILNIIQG+VDPTQVH++LQRIRERKLVNFI WGPASIQVALSRKS YV+TAH+VSGLMLA+HT +  LF + ++QY+K+RK+ AF++NYRK PMFQD L EFD SREV++ L+DEYKA E PDYI WG +   G     G    +V+
Sbjct:    1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINAIQNSEYRNLYNHENIFVADHGGGAGNNWASGYHQGEQVQEDIMDMVDREVDGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQSES-SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNKIAVERLHLTNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTV-ERQANVIRKTTVLDVMRRLLQTKNIMVSSHARTKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFQDDLSEFDESREVIESLVDEYKACESPDYIKWGMEDPDGVLTGEGNATGSVD 468

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BLAST of NO01G02860 vs. NCBI_GenBank
Match: BAN14809.1 (gamma-tubulin [Ginkgo biloba])

HSP 1 Score: 703.0 bits (1813), Expect = 7.400e-199
Identity = 352/452 (77.88%), Postives = 393/452 (86.95%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRT-----GCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDS-LDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIG EFWKQ+C EHGIS +G+L+DFAT+G DRKDVFFYQADD+HYIPRALLMDLEPRVIN I NSEYR LYN EN+F++ +GGGAGNNWASG+ Q EE  + +M+MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LND + KKL+QTYSVFPN  +T SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRL I NPT  Q NSLVSTVM+ASTTTLRYPGYMNNDL+GLVASLIPTPRCHFLMTGYTPL + + Q +A+RKTTVLDVMRRL Q KNIMVS+  RT       YISILNIIQG+VDPTQVHK+LQRIRERKL NFI WGPASIQVALSRKS YV+TAH+VSGLMLA+HT +  LF + ++QY+K+RK+ AF++NYRK PMF D+ L EFD SRE+VQ L+DEYKA E PDYI WG
Sbjct:    1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKEGILEDFATQGGDRKDVFFYQADDEHYIPRALLMDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWASGYHQGEEVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMET-SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTV-ERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCLSQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQSLVDEYKACESPDYIKWG 450

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_024356690.1 (tubulin gamma chain [Physcomitrella patens] >Q9XFG3.1 RecName: Full=Tubulin gamma chain; AltName: Full=Gamma-tubulin >AAD33883.1 gamma tubulin [Physcomitrella patens] >PNR33998.1 hypothetical protein PHYPA_023814 [Physcomitrella patens])

HSP 1 Score: 702.6 bits (1812), Expect = 9.700e-199
Identity = 353/452 (78.10%), Postives = 393/452 (86.95%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRT-----GCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDS-LDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIG EFWKQ+C EHGIS DG+L+DFAT+G DRKDVFFYQADD+HYIPRALL+DLEPRVINSI NSEYR LYN ENVF+A +GGGAGNNWASG+ Q E+  + +M+MIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LND + KKL+QTYSVFPN  +T SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRL I NPT  Q NSLVSTVM+ASTTTLRYPGYMNNDL+GLVASLIPTPRCHFLMTGYTPL + + Q +A+RKTTVLDVMRRL Q KNIMVS+  RT       YISILNIIQG+VDPTQVHK+LQRIRERKL NFI WGPASIQVALSRKS YV+TAH+VSGLMLA+HT +  LF + ++QY+K+RK+ AF++NYRK PMF D+ L EFD SRE+VQ L+DEYKA E  DYI WG
Sbjct:    1 MPREIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMET-SDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLVASLIPTPRCHFLMTGYTPLTV-ERQANAIRKTTVLDVMRRLLQAKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLASHTSIRHLFSKCISQYEKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVQNLVDEYKACESADYIKWG 450

The following BLAST results are available for this feature:

BLAST of NO01G02860 vs. NCBI_GenBank

BLAST of NO01G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
GAY06015.1	2.400e-213	80.22	tubulin gamma2 chain putative [Pythium insidiosum]	[more]
XP_008898934.1	2.000e-212	82.74	tubulin gamma chain [Phytophthora parasitica INRA-...	[more]
OWZ01681.1	2.000e-212	82.74	Tubulin gamma chain [Phytophthora megakarya]	[more]
XP_002899012.1	5.800e-212	82.51	tubulin gamma chain [Phytophthora infestans T30-4]...	[more]
XP_024574646.1	1.900e-210	82.06	tubulin gamma chain [Plasmopara halstedii] >CEG382...	[more]
XP_009531696.1	4.200e-210	83.03	hypothetical protein PHYSODRAFT_248690 [Phytophtho...	[more]
GBG32401.1	5.700e-207	79.12	Tubulin gamma chain [Aurantiochytrium sp. FCC1311]	[more]
PIA49108.1	3.300e-199	74.26	hypothetical protein AQUCO_01300156v1 [Aquilegia c...	[more]
BAN14809.1	7.400e-199	77.88	gamma-tubulin [Ginkgo biloba]	[more]
XP_024356690.1	9.700e-199	78.10	tubulin gamma chain [Physcomitrella patens] >Q9XFG...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL005	nonsL005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008043	NSK008043	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G02860.1	NO01G02860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576795	gene_280	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
TUG	gene1411	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G02860.1	NO01G02860.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G02860 ID=NO01G02860|Name=NO01G02860|organism=Nannochloropsis oceanica|type=gene|length=2362bp
ATTTTTTTCTTCACTTCTGATCAAGCTCACATACCACACGATATTTTCTG
CCAAGGCACTGTAGAGTGTCAGAGGGGGCTACGATACATGGCGCAATTCG
GAGCTAGGTGTAGGAAGCAGAATGTTTCGGCCTTCCCCTGTGCTGCTTCC
CCCACCACCAGTGCATGCTTCCACCTCCCTCACATCCACTTCGTCTGTGA
CTTTCCTCCACGCACAAACACAGGACCACATCCAGCCAGAGAAGCCATGC
CGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGGCAATCAGATCGGC
AGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCATCAGTCCCGATGG
CATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGCAAGGACGTCTTCT
TCTATCAGGCGGACGATGATCACTACATTCCCCGGGCCTTATTGATGGAC
TTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGGAGTACCGCGGCTT
GTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGTGGCGGGGCGGGTA
ACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTACCACGATCAGCTC
ATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACAGCCTGGAGGGGTT
TGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCAGGGATGgtgcgta
ctggggagggtaggagagggattatttccttgtctgccgtggaagtagtg
acaagatagctgtatgtttctttcatctatgccacataggtctttatatt
ctacgcttgaaacgccttttctcacataccacttcccccttcctttcctt
ttctttccttcccttcaccaccacctatcccgaagGGCTCCTACCTGCTC
GAGCGACTCAACGATCACTTCCCCAAAAAGCTCATTCAGACCTACTCCGT
CTTCCCCAATTGGGATCAAACCCAAAGTGATGTGGTGGTGCAGCCATATA
ATTCCCTCCTTACGCTCAAGCGCCTAACCTTGAACGCGGATTGCGTGGTG
GTCCTGGATAACACGGCCCTCAATCGCATTGCTGTGGACCGCCTGCGCAT
CACCAATCCTACTGTCAATCAACTCAATTCCCTCGTTTCTACGgtacgtg
gattaattgcacgctcggtctccttgtcggcggtcgtcttgtcgacagtc
ttcaaggacttgccgtttacgcttgtgaacacattttatccttactaatt
tccgtcactccctccctccttctctcccttcctctcttcctccctagGTC
ATGGCTGCCTCCACCACCACCCTACGTTACCCCGGGTACATGAACAATGA
CCTTATCGGGCTGGTCGCATCCCTCATCCCCACCCCTCGCTGCCATTTCC
TCATGACGGGGTATACGCCCCTTGTGATCTCCGACGTGCAAACCTCCGCT
GTGAGGAAAACAACCGTCTTGGACGTCATGCGTCGCCTGACCCAAACAAA
AAATATCATGGTGTCTGCTTCTACGCGCACGGGGTGTTATATTTCCATTT
TGAATATCATTCAGGGAGACGTCGATCCGACCCAAGTTCACAAGGCTTTG
CAGCGAATCCGCGAGAGGAAATTAGTAAATTTTATCCCGTGGGGCCCGGC
GTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGCATATGTTGAGACAGCGC
ACAAAGTCTCGGGATTAATGTTGGCGAATCATACATGTATGGCTAGCTTG
TTCCAGCGGTCGGTAAATCAATATGATAAGATTAGGAAGAGGAATGCCTT
CGTCGAGAATTATCGAAAAGAGCCCATGTTTCAGGATTCCCTGGATGAGT
TTGATTCGTCTCGGGAAGTGGTACAGGGATTGATTGATGAGTACAAAGCA
GCTGAAGGGCCCGATTATATCTCTTGGGGCCACCAGGGAGGGATAGGGAG
TAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGCAGC
CACAGCAGCAGCTACAACAACAACAGCCGCTGCAGGTGCCATCATCTGGA
TTCCAGCATCCGCACCAGCCGCACTAATGATGATGGAGAGAGAAAGAAGG
GAGATGGAAGGGAGGAAGGGATTGATGTTGTACAGTTTCCTGTGGACCGA
GTGATGCATGTGGAATGATAGATAAGATAAGATAAGAAGGAAGGAGGGCA
GCAGCTGAAGAAGGACAGGCAGAATAAGAGGGAGGAGAAAGGAGGCTGAC
GCAAACGACAAAAAATGAGTAGAATCGCAACCACATATTAACATCAACGA
CGACGACAACAACACCCGAGAGAAAGAATAAAAGGACGAATGAACGAATG
AAGGGGGTGAAA

protein sequence of NO01G02860.1

>NO01G02860.1-protein ID=NO01G02860.1-protein|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MAQFGARCRKQNVSAFPCAASPTTSACFHLPHIHFVCDFPPRTNTGPHPA
REAMPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDR
KDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNG
GGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGS
GMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLT
LNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYP
GYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMR
RLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNF
IPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKI
RKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGH
QGGIGSSAAGGLPVSAVERQQQPQQQLQQQQPLQVPSSGFQHPHQPH*

Synonyms

Publications