NO01G02860, NO01G02860 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO01G02860
Unique Name	NO01G02860
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2362
Alignment location	chr1:740011..742372 -

Link to JBrowse

Properties


Property Name	Value
Description	Tubulin gamma chain

Mutants

Expression

Analysis:

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr1	genome	chr1:740011..742372 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0016787	hydrolase activity
GO:0000166	nucleotide binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule
GO:0000930	gamma-tubulin complex
GO:0005856	cytoskeleton
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process
GO:0031122	cytoplasmic microtubule organization
GO:0007020	microtubule nucleation
GO:0016043	cellular component organization

Vocabulary: **INTERPRO**
Term	Definition
IPR008280	Tub_FtsZ_C
IPR036525	Tubulin/FtsZ_GTPase_sf
IPR003008	Tubulin_FtsZ_GTPase
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR000217	Tubulin
IPR002454	Gamma_tubulin

Homology

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: EWM29130.1 (tubulin gamma-1 chain [Nannochloropsis gaditana])

HSP 1 Score: 893.3 bits (2307), Expect = 3.900e-256
Identity = 450/467 (96.36%), Postives = 454/467 (97.22%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGGIGSSAAGGLPVSAVERQ 521
            MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYR LYNQENVFMASNGGGAGNNWASGHRQAEE+HDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQ SAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDP+QVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAE PDYI+W H G IG +A   LP SA E Q
Sbjct:    1 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRSLYNQENVFMASNGGGAGNNWASGHRQAEEHHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQASAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPSQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAERPDYITWAHGGDIGYAA--NLPSSASEPQ 465

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: CBJ29680.1 (gamma tubulin [Ectocarpus siliculosus])

HSP 1 Score: 783.5 bits (2022), Expect = 4.300e-223
Identity = 388/450 (86.22%), Postives = 417/450 (92.67%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGHQGG 504
            MP EIITLQVGQCGNQIGSEFWKQ+CAEHGISPDG LQ+FA+ G+DRKDVFFYQADDDHYIPRALL+DLEPRVIN I +  YR L+N ENVF++  GGGAGNNWASG+RQAEE HD LM+MIDREADGSDSLEGFVL HSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPN  Q+QSDVVVQPYNS+LTLKRLTLNAD VVVLDNTALNRIAVDRLRI NPTV QLNS+VSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISD QTSAVR+TTVLDVMRRLTQTKNIMVSAST+ GCY+SILNIIQG+VDPTQVHKALQRIRERKLV+FIPWGPASIQVALSRKS YVETAHKVSGLMLANHTCM+ LF RS+ Q+D+IRKRNAFV+NYRKEPMF D+LDEF+ SREVV  LI+EYKA E P+YI+WG  GG
Sbjct:   99 MPREIITLQVGQCGNQIGSEFWKQLCAEHGISPDGTLQEFASHGDDRKDVFFYQADDDHYIPRALLLDLEPRVINMIQSEGYRDLFNPENVFVSKEGGGAGNNWASGYRQAEEQHDYLMDMIDREADGSDSLEGFVLSHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNATQSQSDVVVQPYNSILTLKRLTLNADAVVVLDNTALNRIAVDRLRIPNPTVGQLNSIVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDTQTSAVRRTTVLDVMRRLTQTKNIMVSASTKKGCYVSILNIIQGEVDPTQVHKALQRIRERKLVSFIPWGPASIQVALSRKSPYVETAHKVSGLMLANHTCMSQLFTRSLQQFDRIRKRNAFVDNYRKEPMFADNLDEFEDSREVVASLIEEYKACESPNYINWGMGGG 548

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_009831836.1 (tubulin gamma chain [Aphanomyces astaci] >ETV79117.1 tubulin gamma chain [Aphanomyces astaci])

HSP 1 Score: 762.3 bits (1967), Expect = 1.000e-216
Identity = 375/446 (84.08%), Postives = 407/446 (91.26%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGISPDG++QD+AT+GNDRKDVFFYQADD+HYIPRALLMDLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E++HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LN+DCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCYISILNIIQGDVDPTQVHK+LQRIRERKLV FIPWGPASIQVALSRKS YVE+ HKV+GLMLANHT +A+LF RSV  YD++RK NAF++ YRK+PMF D L+EFD++REVV  +I+EYKA+E  DY +WG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISPDGIVQDYATQGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSIMNSSYRNLYNPENTFIAKDGGGAGNNWASGYNQGEQHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNSDCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYISILNIIQGDVDPTQVHKSLQRIRERKLVKFIPWGPASIQVALSRKSPYVESPHKVNGLMLANHTSIANLFHRSVVHYDRLRKHNAFIDQYRKQPMFADGLEEFDNAREVVTSMIEEYKASERADYATWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_008871750.1 (tubulin gamma chain [Aphanomyces invadans] >ETV99194.1 tubulin gamma chain [Aphanomyces invadans])

HSP 1 Score: 762.3 bits (1967), Expect = 1.000e-216
Identity = 374/446 (83.86%), Postives = 407/446 (91.26%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGISPDG++QD+AT+GNDRKDVFFYQADD+HYIPRALLMDLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E++HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LN+DCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+TGCY+SILNIIQGDVDPTQVHK+LQRIRERKLV FIPWGPASIQVALSRKS YVE+AHKV+GLMLANHT + +LF RSV  YD++RK NAF++ YRK+PMF D L+EFD++REVV  +I+EYKA+E  DY +WG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISPDGIVQDYATQGNDRKDVFFYQADDEHYIPRALLMDLEPRVINSIMNSSYRNLYNPENTFIAKDGGGAGNNWASGYNQGEQHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNSDCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKTGCYVSILNIIQGDVDPTQVHKSLQRIRERKLVKFIPWGPASIQVALSRKSPYVESAHKVNGLMLANHTSIGNLFHRSVVHYDRLRKHNAFIDQYRKQPMFADGLEEFDNAREVVTSMIEEYKASERADYATWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: OQR94579.1 (tubulin gamma chain [Achlya hypogyna])

HSP 1 Score: 759.6 bits (1960), Expect = 6.700e-216
Identity = 376/446 (84.30%), Postives = 403/446 (90.36%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGIS DG++QD+AT GNDRKDVFFYQADD+HYIPRALL+DLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E +HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVE+AHKV+GLMLANHT + +LF RSV  YD++RK NAF++ YRK+PMF DSLDEFD++REVV  +IDEYKA+E  DY SWG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISQDGIVQDYATSGNDRKDVFFYQADDEHYIPRALLLDLEPRVINSIMNSSYRNLYNPENQFIAKDGGGAGNNWASGYHQGEAHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKNGCYISILNIIQGDVDPTQVHKSLQRIRERKLAKFIPWGPASIQVALSRKSPYVESAHKVNGLMLANHTSIGNLFHRSVVHYDRLRKHNAFIDQYRKQPMFSDSLDEFDNAREVVTSMIDEYKASERADYASWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: CCA22677.1 (tubulin gamma2 chain putative [Albugo laibachii Nc14])

HSP 1 Score: 757.3 bits (1954), Expect = 3.300e-215
Identity = 375/446 (84.08%), Postives = 403/446 (90.36%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIG EFWKQ+C EHGISPDG++ D+AT+G+DRKDVFFYQADD+HYIPRALLMDLEPRVINSILNS Y+ LYN EN FM+  GGGAGNNWASG+ Q E+ HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIAVDRLRI NPTV QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I + Q SAVRKT+VLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKLV FIPWGPASIQVALSRKS YVETAHKVSGLMLANHT + SLF RS+ QYD+++K  AF++NY+K+PMF DSLDEFDS+REVVQ L+DEYKA+E  DY+ WG
Sbjct:    1 MPREIITLQVGQCGNQIGMEFWKQLCVEHGISPDGIVHDYATQGHDRKDVFFYQADDEHYIPRALLMDLEPRVINSILNSTYKNLYNPENFFMSKEGGGAGNNWASGYHQGEQQHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQTDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVAQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-ETQVSAVRKTSVLDVMRRLLQPKNIMVSTSTKKGCYISILNIIQGDVDPTQVHKSLQRIRERKLVRFIPWGPASIQVALSRKSPYVETAHKVSGLMLANHTSIGSLFHRSLVQYDRLKKHGAFLDNYKKQPMFADSLDEFDSAREVVQNLVDEYKASERMDYVDWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: OQR82043.1 (tubulin gamma chain [Thraustotheca clavata])

HSP 1 Score: 757.3 bits (1954), Expect = 3.300e-215
Identity = 375/446 (84.08%), Postives = 402/446 (90.13%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGIS DG++QDFAT GNDRKDVFFYQADD+HYIPRALL+DLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E +HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVE+AHKV+GLMLANHT + +LF RSV  YD++RK NAF++ YRK+PMF D+LDEFD +R VV  +IDEYKA+E PDY +WG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISQDGIVQDFATAGNDRKDVFFYQADDEHYIPRALLLDLEPRVINSIMNSSYRNLYNPENHFIAKDGGGAGNNWASGYHQGEMHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKNGCYISILNIIQGDVDPTQVHKSLQRIRERKLARFIPWGPASIQVALSRKSPYVESAHKVNGLMLANHTSIGNLFHRSVVHYDRLRKHNAFIDQYRKQPMFADNLDEFDEARAVVTSMIDEYKASERPDYATWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: CCI10538.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 755.0 bits (1948), Expect = 1.600e-214
Identity = 374/446 (83.86%), Postives = 402/446 (90.13%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIG EFWKQ+C EHGISPDG++ D+AT+G+DRKDVFFYQADD+HYIPRALLMDLEPRVINSILNS Y+ LYN EN FM+  GGGAGNNWASG+ Q E+ HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN    QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIA DRLRI NPTV QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I + Q SAVRKT+VLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKLV FIPWGPASIQVALSRKS YVETAHKVSGLMLANHT + SLF RS+ QYD+++K  AF++NY+K+PMF DSLDEFDS+REVVQ L+DEYKA+E  DY+ WG
Sbjct:    1 MPREIITLQVGQCGNQIGMEFWKQLCVEHGISPDGIVHDYATQGHDRKDVFFYQADDEHYIPRALLMDLEPRVINSILNSTYKNLYNPENFFMSKEGGGAGNNWASGYHQGEQQHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQTDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIASDRLRIDNPTVAQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-ETQVSAVRKTSVLDVMRRLLQPKNIMVSTSTKKGCYISILNIIQGDVDPTQVHKSLQRIRERKLVRFIPWGPASIQVALSRKSPYVETAHKVSGLMLANHTSIGSLFHRSLVQYDRLKKHGAFLDNYKKQPMFADSLDEFDSAREVVQNLVDEYKASERMDYVDWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_008609949.1 (tubulin gamma chain [Saprolegnia diclina VS20] >EQC36528.1 tubulin gamma chain [Saprolegnia diclina VS20])

HSP 1 Score: 754.2 bits (1946), Expect = 2.800e-214
Identity = 373/446 (83.63%), Postives = 402/446 (90.13%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGIS DG++QD+AT GNDRKDVFFYQADD+HYIPRALL+DLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E +HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVE+AHKV+GLMLANHT + +LF RSV  YD++RK NAF++ YRK+PMF + L+EFD++REVV  +IDEYKA+E  DY SWG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISQDGIVQDYATAGNDRKDVFFYQADDEHYIPRALLLDLEPRVINSIMNSSYRNLYNPENQFIAKDGGGAGNNWASGYHQGEAHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKNGCYISILNIIQGDVDPTQVHKSLQRIRERKLAKFIPWGPASIQVALSRKSPYVESAHKVNGLMLANHTSIGNLFHRSVVHYDRLRKHNAFIDQYRKQPMFAEGLEEFDNAREVVTNMIDEYKASERADYASWG 445

[Close]

BLAST of NO01G02860 vs. NCBI_GenBank
Match: XP_012205687.1 (tubulin gamma chain [Saprolegnia parasitica CBS 223.65] >KDO23536.1 tubulin gamma chain [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 751.9 bits (1940), Expect = 1.400e-213
Identity = 372/446 (83.41%), Postives = 401/446 (89.91%), Query Frame = 0

Query:   54 MPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDRKDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNGGGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMRRLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNFIPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKIRKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWG 500
            MP EIITLQVGQCGNQIGSEFWKQ+C EHGIS DG++QD+A  GNDRKDVFFYQADD+HYIPRALL+DLEPRVINSI+NS YR LYN EN F+A +GGGAGNNWASG+ Q E +HD LMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE LNDHFPKKLIQTYSVFPN D  QSDVVVQPYNSLLTLKRL LNADCVVVLDNTALNRIAVDRLRI NPTV+QLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPL I D Q SAVRKTTVLDVMRRL Q KNIMVS ST+ GCYISILNIIQGDVDPTQVHK+LQRIRERKL  FIPWGPASIQVALSRKS YVE+AHKV+GLMLANHT + +LF RSV  YD++RK NAF++ YRK+PMF + L+EFD++REVV  +IDEYKA+E  DY SWG
Sbjct:    1 MPREIITLQVGQCGNQIGSEFWKQLCVEHGISQDGIVQDYAMAGNDRKDVFFYQADDEHYIPRALLLDLEPRVINSIMNSSYRNLYNPENQFIAKDGGGAGNNWASGYHQGEAHHDLLMEMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLENLNDHFPKKLIQTYSVFPNQDDFQSDVVVQPYNSLLTLKRLVLNADCVVVLDNTALNRIAVDRLRIDNPTVSQLNSLVSTVMAASTTTLRYPGYMNNDLIGLVASLIPTPRCHFLMTGYTPLTI-DAQVSAVRKTTVLDVMRRLLQPKNIMVSTSTKNGCYISILNIIQGDVDPTQVHKSLQRIRERKLAKFIPWGPASIQVALSRKSPYVESAHKVNGLMLANHTSIGNLFHRSVVHYDRLRKHNAFIDQYRKQPMFAEGLEEFDNAREVVTNMIDEYKASERADYASWG 445

The following BLAST results are available for this feature:

BLAST of NO01G02860 vs. NCBI_GenBank

BLAST of NO01G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM29130.1	3.900e-256	96.36	tubulin gamma-1 chain [Nannochloropsis gaditana]	[more]
CBJ29680.1	4.300e-223	86.22	gamma tubulin [Ectocarpus siliculosus]	[more]
XP_009831836.1	1.000e-216	84.08	tubulin gamma chain [Aphanomyces astaci] >ETV79117...	[more]
XP_008871750.1	1.000e-216	83.86	tubulin gamma chain [Aphanomyces invadans] >ETV991...	[more]
OQR94579.1	6.700e-216	84.30	tubulin gamma chain [Achlya hypogyna]	[more]
CCA22677.1	3.300e-215	84.08	tubulin gamma2 chain putative [Albugo laibachii Nc...	[more]
OQR82043.1	3.300e-215	84.08	tubulin gamma chain [Thraustotheca clavata]	[more]
CCI10538.1	1.600e-214	83.86	unnamed protein product [Albugo candida]	[more]
XP_008609949.1	2.800e-214	83.63	tubulin gamma chain [Saprolegnia diclina VS20] >EQ...	[more]
XP_012205687.1	1.400e-213	83.41	tubulin gamma chain [Saprolegnia parasitica CBS 22...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL005	nonsL005	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR047	ncniR047	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR091	ngnoR091	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK008043	NSK008043	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO01G02860.1	NO01G02860.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576795	gene_280	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
TUG	gene1411	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO01G02860.1	NO01G02860.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO01G02860 ID=NO01G02860|Name=NO01G02860|organism=Nannochloropsis oceanica|type=gene|length=2362bp
ATTTTTTTCTTCACTTCTGATCAAGCTCACATACCACACGATATTTTCTG
CCAAGGCACTGTAGAGTGTCAGAGGGGGCTACGATACATGGCGCAATTCG
GAGCTAGGTGTAGGAAGCAGAATGTTTCGGCCTTCCCCTGTGCTGCTTCC
CCCACCACCAGTGCATGCTTCCACCTCCCTCACATCCACTTCGTCTGTGA
CTTTCCTCCACGCACAAACACAGGACCACATCCAGCCAGAGAAGCCATGC
CGCACGAAATCATCACGCTGCAGGTGGGCCAGTGCGGCAATCAGATCGGC
AGCGAGTTTTGGAAGCAAATCTGTGCGGAGCACGGCATCAGTCCCGATGG
CATGCTTCAGGACTTCGCCACGGAGGGGAACGACCGCAAGGACGTCTTCT
TCTATCAGGCGGACGATGATCACTACATTCCCCGGGCCTTATTGATGGAC
TTAGAGCCGCGTGTCATAAATTCGATTCTGAATTCGGAGTACCGCGGCTT
GTACAACCAGGAGAATGTCTTCATGGCTAGCAATGGTGGCGGGGCGGGTA
ACAATTGGGCGTCAGGCCATCGGCAGGCGGAGGAGTACCACGATCAGCTC
ATGGAGATGATCGATCGGGAGGCGGATGGCAGTGACAGCCTGGAGGGGTT
TGTTCTTTGTCACTCTATAGCTGGTGGCACGGGCTCAGGGATGgtgcgta
ctggggagggtaggagagggattatttccttgtctgccgtggaagtagtg
acaagatagctgtatgtttctttcatctatgccacataggtctttatatt
ctacgcttgaaacgccttttctcacataccacttcccccttcctttcctt
ttctttccttcccttcaccaccacctatcccgaagGGCTCCTACCTGCTC
GAGCGACTCAACGATCACTTCCCCAAAAAGCTCATTCAGACCTACTCCGT
CTTCCCCAATTGGGATCAAACCCAAAGTGATGTGGTGGTGCAGCCATATA
ATTCCCTCCTTACGCTCAAGCGCCTAACCTTGAACGCGGATTGCGTGGTG
GTCCTGGATAACACGGCCCTCAATCGCATTGCTGTGGACCGCCTGCGCAT
CACCAATCCTACTGTCAATCAACTCAATTCCCTCGTTTCTACGgtacgtg
gattaattgcacgctcggtctccttgtcggcggtcgtcttgtcgacagtc
ttcaaggacttgccgtttacgcttgtgaacacattttatccttactaatt
tccgtcactccctccctccttctctcccttcctctcttcctccctagGTC
ATGGCTGCCTCCACCACCACCCTACGTTACCCCGGGTACATGAACAATGA
CCTTATCGGGCTGGTCGCATCCCTCATCCCCACCCCTCGCTGCCATTTCC
TCATGACGGGGTATACGCCCCTTGTGATCTCCGACGTGCAAACCTCCGCT
GTGAGGAAAACAACCGTCTTGGACGTCATGCGTCGCCTGACCCAAACAAA
AAATATCATGGTGTCTGCTTCTACGCGCACGGGGTGTTATATTTCCATTT
TGAATATCATTCAGGGAGACGTCGATCCGACCCAAGTTCACAAGGCTTTG
CAGCGAATCCGCGAGAGGAAATTAGTAAATTTTATCCCGTGGGGCCCGGC
GTCGATTCAGGTGGCTTTGTCAAGGAAAAGTGCATATGTTGAGACAGCGC
ACAAAGTCTCGGGATTAATGTTGGCGAATCATACATGTATGGCTAGCTTG
TTCCAGCGGTCGGTAAATCAATATGATAAGATTAGGAAGAGGAATGCCTT
CGTCGAGAATTATCGAAAAGAGCCCATGTTTCAGGATTCCCTGGATGAGT
TTGATTCGTCTCGGGAAGTGGTACAGGGATTGATTGATGAGTACAAAGCA
GCTGAAGGGCCCGATTATATCTCTTGGGGCCACCAGGGAGGGATAGGGAG
TAGCGCGGCGGGGGGGTTGCCTGTGTCGGCGGTGGAGCGGCAGCAGCAGC
CACAGCAGCAGCTACAACAACAACAGCCGCTGCAGGTGCCATCATCTGGA
TTCCAGCATCCGCACCAGCCGCACTAATGATGATGGAGAGAGAAAGAAGG
GAGATGGAAGGGAGGAAGGGATTGATGTTGTACAGTTTCCTGTGGACCGA
GTGATGCATGTGGAATGATAGATAAGATAAGATAAGAAGGAAGGAGGGCA
GCAGCTGAAGAAGGACAGGCAGAATAAGAGGGAGGAGAAAGGAGGCTGAC
GCAAACGACAAAAAATGAGTAGAATCGCAACCACATATTAACATCAACGA
CGACGACAACAACACCCGAGAGAAAGAATAAAAGGACGAATGAACGAATG
AAGGGGGTGAAA

protein sequence of NO01G02860.1

>NO01G02860.1-protein ID=NO01G02860.1-protein|Name=NO01G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MAQFGARCRKQNVSAFPCAASPTTSACFHLPHIHFVCDFPPRTNTGPHPA
REAMPHEIITLQVGQCGNQIGSEFWKQICAEHGISPDGMLQDFATEGNDR
KDVFFYQADDDHYIPRALLMDLEPRVINSILNSEYRGLYNQENVFMASNG
GGAGNNWASGHRQAEEYHDQLMEMIDREADGSDSLEGFVLCHSIAGGTGS
GMGSYLLERLNDHFPKKLIQTYSVFPNWDQTQSDVVVQPYNSLLTLKRLT
LNADCVVVLDNTALNRIAVDRLRITNPTVNQLNSLVSTVMAASTTTLRYP
GYMNNDLIGLVASLIPTPRCHFLMTGYTPLVISDVQTSAVRKTTVLDVMR
RLTQTKNIMVSASTRTGCYISILNIIQGDVDPTQVHKALQRIRERKLVNF
IPWGPASIQVALSRKSAYVETAHKVSGLMLANHTCMASLFQRSVNQYDKI
RKRNAFVENYRKEPMFQDSLDEFDSSREVVQGLIDEYKAAEGPDYISWGH
QGGIGSSAAGGLPVSAVERQQQPQQQLQQQQPLQVPSSGFQHPHQPH*

Synonyms

Publications