NO01G02840, NO01G02840 (gene) Nannochloropsis oceanica

Overview
NameNO01G02840
Unique NameNO01G02840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1053
Alignment locationchr1:735491..736543 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:735491..736543 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02840 vs. NCBI_GenBank
Match: EWM29211.1 (hypothetical protein Naga_100007g118 [Nannochloropsis gaditana])

HSP 1 Score: 357.8 bits (917), Expect = 3.700e-95
Identity = 209/357 (58.54%), Postives = 259/357 (72.55%), Query Frame = 0 
Query:    1 MKLFAAVFVLVAAISTI-LTVNAFVPH---PPPSPFIAGSSTS----TMGR--TRRSAATLVAPTSSIKSSVQDTLKQAFPSVQIPAEFLSAVSSPGMGTDLERALIRGKAFAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPDLQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREACVVAFNDDGQLQSLSAGLVVEEESDGKDESVAEAAQVELMKRLASHVQKLEMTPTGKSAREKIQQDIDSTQAKIDAYEKAGETVKVGTGAGLGGLLQALGVDVPKAEILSDVLVSHASEPLLVMEASDLITVPTECDALMDNINPMT 348
            MK  AA   LVAA+  I   V AF+P    P  S  I G++++    + GR     S + +V+ +SSI    +  L+++FP+V++   FLSA+      TD  RALIR KAFA MAPR++++RGW+VLS+DFVYYSSATG LDRA +LGLV IMERALPDL+Q +S+FEV +DG V+YVS+AVGTFTGQL I   + EG+GLKYQGL+E CVVAFN+DGQLQSLSAGLVVEE SD  +E VA  A   L+KRL SH QKLEMTPTGKSAREKIQQDID+TQAKI+A+EK  ETVKV   AGLGGLL ALGV VP+A  LS  L     + L VM+  DL++VPTEC+ L+++  PMT
Sbjct:    1 MKGLAASSSLVAAVFMISKVVQAFIPRLDFPQTSVLITGTTSTRTKESGGRDAVAHSPSDVVSSSSSIPLCAEVVLRRSFPNVEVAPGFLSAIRPNSKSTDTGRALIRAKAFANMAPRIIVSRGWNVLSEDFVYYSSATGPLDRAEYLGLVAIMERALPDLRQDSSRFEVGADGTVLYVSQAVGTFTGQLQIGHDIHEGSGLKYQGLKEVCVVAFNEDGQLQSLSAGLVVEEGSDEDEELVAAEALSGLLKRLESHKQKLEMTPTGKSAREKIQQDIDNTQAKIEAFEKDSETVKVAHEAGLGGLLGALGVCVPEAGDLSSALAGQGLDELFVMDDLDLMSVPTECETLLEDKGPMT 357
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BLAST of NO01G02840 vs. NCBI_GenBank
Match: CBN75750.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.3 bits (194), Expect = 2.600e-11
Identity = 63/208 (30.29%), Postives = 103/208 (49.52%), Query Frame = 0 
Query:  102 FAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPDLQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREACVVAFNDDGQLQSLSAGLVVEEESDGKD-ESVAEAAQVELMKRLASHVQKLEMTPTGKS--AREKIQQDIDSTQAKIDA-YEKAGETVKVGTGAGLGGLLQALGVDVPK 306
            F ++A  VL++RG +VL++DF YYS  TG+LDR  FL L   ++ A    + + + F V  DG V Y  +      G L + +     +  K     + C V+F+D G + S + GL+VE     +D ++VAE    E+ KR+ +   K++     +S  A  K + DID  +  ++A  E+           G+ GL  A+G   P+
Sbjct:   66 FVSLANLVLLSRGKNVLAEDFKYYSPGTGRLDRESFLRLTKTLDVAFSTFRVTPTDFVVYKDGTVTYRRKFKAVHDGYLTVGDKTYPPSQTKVISDVDLCAVSFDDMGVVLSYAYGLMVEVVYAIEDPDAVAEIE--EIKKRVVNQQAKMKSLEGQESSIAYSKCKSDIDVMKLDMEALLERVNSAPNTEGLGGIPGLFAAVGAKFPE 271
The following BLAST results are available for this feature:
BLAST of NO01G02840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29211.13.700e-9558.54hypothetical protein Naga_100007g118 [Nannochlorop... [more]
CBN75750.12.600e-1130.29expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008045NSK008045Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02840.1NO01G02840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576789gene_278Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g118gene1413Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02840.1NO01G02840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02840 ID=NO01G02840|Name=NO01G02840|organism=Nannochloropsis oceanica|type=gene|length=1053bp
ATGAAGTTGTTCGCAGCCGTCTTCGTGCTGGTGGCCGCCATCAGCACCAT
TTTGACAGTTAATGCCTTTGTCCCCCACCCGCCCCCCTCGCCCTTCATAG
CTGGTAGTAGCACCAGCACGATGGGCAGGACAAGGCGCTCGGCTGCCACT
CTTGTCGCCCCGACGTCGTCCATCAAGTCGAGTGTGCAAGACACCTTGAA
GCAGGCGTTTCCATCAGTCCAAATTCCTGCAGAGTTCTTGTCCGCCGTCA
GCTCCCCCGGGATGGGCACGGACTTGGAGCGAGCATTAATTCGCGGCAAG
GCATTTGCGGCCATGGCGCCGCGCGTGTTGATTACCAGGGGCTGGGACGT
GTTGTCCGACGATTTTGTGTACTACAGTAGCGCAACGGGCAAGTTGGACC
GTGCGGGATTTCTTGGCTTGGTGTGCATCATGGAACGGGCTTTGCCGGAC
TTGCAGCAATCTGCCTCTAAGTTTGAGGTGACGAGCGACGGGGCAGTGAT
GTACGTCTCGGAAGCTGTAGGCACTTTTACAGGTCAGCTTATCATCAGCG
AGACAATGCAAGAAGGCAATGGACTCAAGTACCAGGGGTTAAGGGAGGCG
TGCGTCGTGGCATTTAATGACGATGGGCAACTGCAGAGTTTGAGCGCAGG
ATTGGTAGTGGAGGAGGAAAGCGACGGCAAGGATGAGAGCGTGGCGGAGG
CAGCGCAAGTGGAGTTGATGAAACGGTTGGCCTCGCATGTGCAAAAGTTG
GAGATGACGCCGACGGGCAAGTCGGCCCGGGAAAAAATTCAACAAGACAT
CGATAGCACTCAGGCAAAGATTGACGCGTATGAAAAGGCGGGGGAGACGG
TGAAGGTGGGTACAGGGGCAGGGCTTGGAGGACTTTTGCAGGCGCTGGGA
GTCGATGTGCCGAAAGCGGAGATTTTGAGCGACGTGTTGGTGTCGCATGC
ATCGGAGCCATTGCTGGTGATGGAGGCGAGCGATCTGATCACAGTCCCGA
CGGAGTGTGATGCATTGATGGATAACATCAATCCAATGACTACAGTCTGG
TAA
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protein sequence of NO01G02840.1

>NO01G02840.1-protein ID=NO01G02840.1-protein|Name=NO01G02840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MKLFAAVFVLVAAISTILTVNAFVPHPPPSPFIAGSSTSTMGRTRRSAAT
LVAPTSSIKSSVQDTLKQAFPSVQIPAEFLSAVSSPGMGTDLERALIRGK
AFAAMAPRVLITRGWDVLSDDFVYYSSATGKLDRAGFLGLVCIMERALPD
LQQSASKFEVTSDGAVMYVSEAVGTFTGQLIISETMQEGNGLKYQGLREA
CVVAFNDDGQLQSLSAGLVVEEESDGKDESVAEAAQVELMKRLASHVQKL
EMTPTGKSAREKIQQDIDSTQAKIDAYEKAGETVKVGTGAGLGGLLQALG
VDVPKAEILSDVLVSHASEPLLVMEASDLITVPTECDALMDNINPMTTVW
*
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Synonyms
Publications