NO01G02750, NO01G02750 (gene) Nannochloropsis oceanica

Overview
NameNO01G02750
Unique NameNO01G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2843
Alignment locationchr1:712396..715238 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:712396..715238 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02750 vs. NCBI_GenBank
Match: EWM29178.1 (hypothetical protein Naga_100007g109 [Nannochloropsis gaditana])

HSP 1 Score: 171.8 bits (434), Expect = 2.600e-39
Identity = 112/237 (47.26%), Postives = 142/237 (59.92%), Query Frame = 0 
Query:    4 SDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLEALDDWKALVQQLQADRKRLGDEVDELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAIAGEADALLLLEGQEAG--DLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDDGLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV 239
            S  +AL K+LEHLKN KLE EER+FA+ A+L+A  S V+                               RLE LDDWKALVQQLQADR+RLG+EVD L+ E++LL+ ELK+H  E  K     SSSI   D    +   V G G    E +A   L   E    ++R L++  E+LE +NRR+ +EI+RL EQVRR DGLL+AWGR AG+LGNY  LF G+G  T + +NHPVIQV
Sbjct:    8 SSQEALVKILEHLKNTKLEYEERIFALNAKLKAMKSVVKESDIRQAQMEDELDFRKSELEELKRQQLQKHRLERLDDWKALVQQLQADRRRLGEEVDHLQKEKQLLVMELKEHEQEKGKT----SSSI-FHDHLHCEMDGVRGSGGRHSEYEAKFSLPRDELAFEEVRFLQERVEVLENKNRRAHVEIKRLLEQVRRRDGLLQAWGRVAGSLGNYLRLFSGNG-TTFRGINHPVIQV 238
The following BLAST results are available for this feature:
BLAST of NO01G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29178.12.600e-3947.26hypothetical protein Naga_100007g109 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008053NSK008053Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02750.1NO01G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576758gene_266Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g109gene1422Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02750.1NO01G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02750 ID=NO01G02750|Name=NO01G02750|organism=Nannochloropsis oceanica|type=gene|length=2843bp
AGGATTTGCGCACCGATCAGCCCAGCGCGGCCGGGATAATCCGGCAAGGA
TCCTCCTGCACGCCAAGGGGCTGAACCGAGCTGCGCAACATTCAGCATAA
GCCACCTGCGGGGCCAAGTCAGGAGAGAGCGAGGATCCAGGTGGCAAGCG
ACCGTGTCCCCAATTTTCTCTGGCGGCAGGGGTTCATCTGCAAAGCTTTC
TTTTGTCGACTCCACTCGTGATACCATGGTAGCATCAGATGGGgtacgtg
aatatcgactgtgtacgcgtgcccgcgctttatcctcttctcctcgtctc
cacacctccatttcccgctttttgtcgctccattacgctcatttactcgc
aaacctatacgaattcaacagGACGCGCTAAGTAAAGTCTTGGAGCACCT
GAAAAATGTCAAACTCGAGTCAGAGGAACGACTCTTTGCGATGAAAGCTC
AACTTCAAGCCCGGGCGTCCCAAGTGGAGGAGGCACAGAAGCGCCAAGCC
CAGTTAGAAGACGAACTCGACTTTCAGCAAAGCCAACTCGAGGAACTCCG
CCGCCAGCAATCCCGAAAACACCGTTTGGAGGCCTTGGATGATTGGAAGG
CGCTCGTACAGCAACTGCAGGCAGATCGAAAGCGGTTGGGTGATGAGGTG
GATGAACTAAGGAGCGAACGGAGGCTTCTGATTGCGGAGCTGAAGAAGCA
CCTGGGTGAAACAACAAAAAATAGGGAGACAGAATCGAGTTCAATTGATG
TTGATGATCGGCAGTTGGTGAAAGCCTTGGCGGTGAATGGTGGGGGGGCT
ATTGCGGGGGAAGCAGACGCGTTGCTGCTGTTGGAGGGGCAGGAGGCGGG
GGACTTGAGGCGGTTGCGGAAGCATTGTGAGATGCTGGAACTACAGAATA
GGAGGAGTCAGTTGGAGATTCAGAGATTGCGAGAACAGGTCCGGAGGGAT
GATGGCTTGCTTAAGGCGTGGGGACGGGCAGCAGGAACATTGGGGAATTA
TTTTGGCCTGTTTGGTGGGAGTGGGATGAGAACGGTGAAGAAGGTGAACC
ATCCTGTTATCCAGGTGTAGGAAAATGCGCGAGGCAATGAGCATTTCTTG
CTGCTCTGTGCGTGTGTGTATGTATGACTTGTTCTTTGAAGGCATGGAAT
CCTCTAACAATAGTATGTATATAGAAAGAAATGCGTGTGAGATGGAGGGA
CGAGAGGCATTTATCGAGAAGAATTCTGATGTCCTGCCGAGAAAAAAGTG
GCTGAAAAGTGTGAATGATGTTTGCTCAAAGAAAGGAAAGAAAAAGGCAA
GAGCTCTTGGTATTTTGATATTGCTTCAGTGCGAGGACATAACTTCAAGC
GATTGCTTTCCCGCGTGTAAAGATGCTATTTTAGCCTTATCCGGCCTAGC
GACACACGCACTTTGCTCTGTGCATAATGTTATCTACAGAAATCCCTTCC
GCAATCCCTTTCTCTGCATCATATTGCTAAAGGTGCTGCTCATACTCGCT
TTAGCATCGGAGGAAGAAGAGAACAACGACGAGGAAGCAGGCGTCACAAG
GGAAGGATTCATGCTACTGCTGTCGGTGCTCCTGTGGTGGTATTGCCCAT
ACAAAGTACTGGCCCCCGTGGCATCCCCATTGTGACCACCCTCCTTTTCC
GCACCATGCACACTTCCCCGCTCCTCTTCCTGCTTCCATCCCCCCTCATC
TTCCTCAAAGTCCTCCTCCGAGGCGTATAAAGCAGCCACCTTATTGACAA
GTTCGCGCATCCCCTTCTTCTTCTTTTGTCCTACCCCCACATTCAACAGC
CCGGCCATATGCCGGAAGGCATAGTTCTGGTAGTTCTGTTCGATCCACGC
CATTACATCTGCCTCTCCATAATAAAAAGCCTTCACATAATTATCCACAT
GCATTTTCCCGCGAATCGGCCTCACTTTATGAATACGATCCAATCCTGCC
TGCACCGCTTGCAAGTCCATACTCATCAACGACCGCCCTTCCGTAGAGCA
CCGTTCAATCCTTGCGAAAGCCTCCAACAGCGCGCCCATAACGCTTTGAG
CCACCTCCGTCCATATCAGCAGCTGCGCCGAGGGGGGGATGTACACGCCT
ACCCCCATCCCTATCACCACCCCTCCATCCGGTCCCTTAATCTTCTCCCA
TAAGTCACGGCAAGTCCCAAAAACCTTATCTGTGTAGGGATTTGCCTCGT
CCCGGATCAGATGCTGATTCCACTGCTGCTCTTCTATCGCATGGACCAAT
CCAGCAGCTCCGATCAAACGTGGAGCGGCGCATCGATAAGTCAAAATACG
AAGCTGAGAAATGGCCTCAGTGGCTGTCTCGAGGTATGTTTCTAATGTAC
CGCGGTTACCTCCCAAAGCGCGATTCTTGTCGGGCAAGATGAGGAGGACT
TGGGACTGGATAGTTTTGAGAATTTCGAGAACAAAAAGGCAGGACTCGAC
TGCGACGGCTCGGTTGGATAGTCCAAACAGAGTCTCGGCGTCTTCTAAGG
TCTCGGTGATGAGCGAGGAGCATTTGAAGTCGACTCTCCTGTTTTGGGTT
AAATCAGGAAAGTAAATTAGGAAAGAGGGGATGGGTGGGGAGGAGAGATT
AAATAGGTTTGTAGATGAAGAGCAAACCTATTTCCAATCCACCAGCTATC
TGATAGTCTGTCATACTTGTCTGACCTGATTATTCGTTTTGACCCCACCT
TCGCAACCAAACGGCGGTCCGCTCCCTCACTCCCATCGCTTTCCTCGTCA
TGACTATCATCACCGGCTGCTGCCCTTCCGAACCCCTGAATTTTGGACAC
TGCTGCATGAGGCCAAGAGCGACAAGAAGCCGAAACCACGCCT
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protein sequence of NO01G02750.1

>NO01G02750.1-protein ID=NO01G02750.1-protein|Name=NO01G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MVASDGDALSKVLEHLKNVKLESEERLFAMKAQLQARASQVEEAQKRQAQ
LEDELDFQQSQLEELRRQQSRKHRLEALDDWKALVQQLQADRKRLGDEVD
ELRSERRLLIAELKKHLGETTKNRETESSSIDVDDRQLVKALAVNGGGAI
AGEADALLLLEGQEAGDLRRLRKHCEMLELQNRRSQLEIQRLREQVRRDD
GLLKAWGRAAGTLGNYFGLFGGSGMRTVKKVNHPVIQV*
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Synonyms
Publications