NO01G02720, NO01G02720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G02720 vs. NCBI_GenBank
Match: CBN77196.1 (30S ribosomal protein S1 [Ectocarpus siliculosus]) HSP 1 Score: 92.0 bits (227), Expect = 6.100e-15 Identity = 67/215 (31.16%), Postives = 101/215 (46.98%), Query Frame = 0 Query: 115 LSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNY---DPKKFLSGTVASVQAYGAFIRLDD-----AEMDGLLPTG----DMDGKLESGQRVQVRITDVDMERNRITLSNLPLLRGKRTRFA 318 L + G E+ G + + +G FVDIG E +GLVHISQ++ FV++ D GD V VRVLNVD R++ L+M+ + + + +V + + DP +F+S V ++ +YGAF L+D + + PTG D+ L GQ V VRI +VD + RI +S LP +G+ R A Sbjct: 115 LEDIVVGEEYEGVINNVVTYGAFVDIGTEVNGLVHISQLADEFVANCDDHVKEGDMVRVRVLNVDGEARKLVLSMRQKP--------------------------------RSSSAEQGNVQKYADMLAEDPSQFVSAKVENIVSYGAFFGLEDGCSGFVHISQMSPTGEHVADVSDVLTVGQVVDVRIREVDEKLGRINMSLLPYGQGEAPRSA 297
BLAST of NO01G02720 vs. NCBI_GenBank
Match: WP_075713679.1 (RNA-binding transcriptional accessory protein [Eubacterium sp. 68-3-10] >OLR56245.1 RNA-binding transcriptional accessory protein [Eubacterium sp. 68-3-10]) HSP 1 Score: 89.4 bits (220), Expect = 3.900e-14 Identity = 42/73 (57.53%), Postives = 57/73 (78.08%), Query Frame = 0 Query: 118 LAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMK 191 L +G E TG V+ + +FG FVDIG + DGLVHISQ+SS +VS P D+ +VGDTV VR+L+VD K++++LTMK Sbjct: 652 LKEGMELTGTVRNVVDFGAFVDIGVKQDGLVHISQLSSKYVSHPMDVVSVGDTVKVRILSVDKAKKKISLTMK 724
BLAST of NO01G02720 vs. NCBI_GenBank
Match: CDY14222.1 (BnaA08g13530D [Brassica napus]) HSP 1 Score: 89.0 bits (219), Expect = 5.200e-14 Identity = 65/203 (32.02%), Postives = 98/203 (48.28%), Query Frame = 0 Query: 118 LAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPK----KFLSGTVASVQAYGAFIRLDDAEMDGLLPTGD----------MDG--KLESGQRVQVRITDVDMERNRITLS 305 L GA FTGKV+ I+ FG FVD GA +DGLVH+SQ+S TFV + + +G V VR++ VD ++++LTM+ K G ++ S + K + L GTV ++ GAFI + + E +G LPT + M G L++GQ V+VR+ + + R R+TL+ Sbjct: 131 LVAGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDTFVKDVASVVTIGQEVKVRLVEVDIESKRISLTMREN-----------------DGPPKRQPGGSGGSDSKPRGGGKRNASKEDGFSSKYVKGQMLDGTVKNLTRSGAFITIGEGE-EGFLPTNEEADDGIGSMMMGGGSSLQAGQEVKVRV--LRIARGRVTLT 313
BLAST of NO01G02720 vs. NCBI_GenBank
Match: WP_035317029.1 (RNA-binding transcriptional accessory protein [Clostridium sp. MSTE9]) HSP 1 Score: 88.2 bits (217), Expect = 8.800e-14 Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0 Query: 115 LSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMK 191 LS L G E TG V+ + +FG F+DIG DGLVHISQMS F+ PSDL VGD VTV VL+V+ K++++LTMK Sbjct: 637 LSDLKAGMELTGTVRNVTDFGAFIDIGVHQDGLVHISQMSDHFIKHPSDLVKVGDVVTVTVLSVEEAKKRISLTMK 712
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_013656345.1 (uncharacterized protein LOC106361178 [Brassica napus]) HSP 1 Score: 88.2 bits (217), Expect = 8.800e-14 Identity = 65/203 (32.02%), Postives = 97/203 (47.78%), Query Frame = 0 Query: 118 LAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPK----KFLSGTVASVQAYGAFIRLDDAEMDGLLPTGD----------MDG--KLESGQRVQVRITDVDMERNRITLS 305 L GA FTGKV+ I+ FG FVD GA +DGLVH+SQ+S TFV + + +G V VR++ D +++ALTM+ K G ++ S + K + L GTV ++ GAFI + + E +G LPT + M G L++GQ V+VR+ + + R R+TL+ Sbjct: 134 LVAGATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDTFVKDVASVVTIGQEVKVRLVEADIEAKRIALTMREN--------------------DDPPKRQPGGSDSKPRGGGKRNASKEDGFSSKYVKGQMLDGTVKNLTRSGAFITIGEGE-EGFLPTNEEADDGIGSMMMGGGSSLQAGQEVKVRV--LRIARGRVTLT 313
BLAST of NO01G02720 vs. NCBI_GenBank
Match: EJF39601.1 (Tex-like protein N-terminal domain protein [Clostridium sp. MSTE9]) HSP 1 Score: 88.2 bits (217), Expect = 8.800e-14 Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 0 Query: 115 LSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMK 191 LS L G E TG V+ + +FG F+DIG DGLVHISQMS F+ PSDL VGD VTV VL+V+ K++++LTMK Sbjct: 656 LSDLKAGMELTGTVRNVTDFGAFIDIGVHQDGLVHISQMSDHFIKHPSDLVKVGDVVTVTVLSVEEAKKRISLTMK 731
BLAST of NO01G02720 vs. NCBI_GenBank
Match: WP_012119946.1 (30S ribosomal protein S1 [Roseiflexus castenholzii] >ABU57517.1 RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 67/204 (32.84%), Postives = 97/204 (47.55%), Query Frame = 0 Query: 118 LAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDM-DGKLES-------GQRVQVRITDVDMERNRITLSNLPLLRGKR 314 LA G E G+V I +GIFVDIG DGLVHIS+MS T + SPSDL +GDTV VRV +V+ R+++LTM+ + D L VGD + GTV + +G F+ + + DGL+ ++ +G++E GQ ++ +VD E RI+LS RG++ Sbjct: 136 LAPGMELEGRVTSIALYGIFVDIGVGRDGLVHISEMSDTRIESPSDLVKIGDTVKVRVKSVEPDGRRISLTMRMK-----------ERGAEPRSGRGKKKPEVDYDKLAALRVGDN-------------VEGTVTGLAPFGVFVDIGVGK-DGLVHVSELAEGRVEKAEDVVQVGQTYTFKVLEVDAEGARISLSLRRAQRGQK 314
BLAST of NO01G02720 vs. NCBI_GenBank
Match: WP_029215234.1 (hypothetical protein [bacterium JKG1]) HSP 1 Score: 87.8 bits (216), Expect = 1.100e-13 Identity = 62/201 (30.85%), Postives = 96/201 (47.76%), Query Frame = 0 Query: 121 GAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDM-DGKLES-------GQRVQVRITDVDMERNRITLSNLPLLRGKR 314 G + G+V I +G+FVD+G DGLVHIS+MS T V SP+DL +GD VTV V +VD R+++LTM+ + D+ + P + GTV+S+ +GAF+ + + DGL+ ++ +G++E G+R R+ + D E RI+LS LR +R Sbjct: 205 GMQLEGRVTSIALYGVFVDVGVGRDGLVHISEMSDTRVESPTDLVQIGDPVTVWVKSVDPEARRISLTMRDPNRPKPQRERRPRKP-------------------------EVDLEKLRQLKPGDTVEGTVSSLSPFGAFVDIGVGK-DGLVHISELSEGRIEKPEDAVQVGERYTFRVLEADPEGKRISLSLRRALRSQR 379
BLAST of NO01G02720 vs. NCBI_GenBank
Match: KJS14486.1 (hypothetical protein VR69_17300 [Peptococcaceae bacterium BRH_c4b]) HSP 1 Score: 87.4 bits (215), Expect = 1.500e-13 Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 0 Query: 115 LSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMK 191 L L+QG E G V+ + +FG FVDIG + DGLVH SQ+S ++S P D+ AVGD VTVRVL VDA +++V+LTMK Sbjct: 639 LEDLSQGMELRGTVRNVVDFGAFVDIGVKVDGLVHRSQLSDRYISHPMDVVAVGDVVTVRVLEVDAARKRVSLTMK 714
BLAST of NO01G02720 vs. NCBI_GenBank
Match: WP_053952036.1 (30S ribosomal protein S1 [Candidatus Thioglobus autotrophicus] >ALE53047.1 30S ribosomal protein S1 [Candidatus Thioglobus autotrophicus]) HSP 1 Score: 87.4 bits (215), Expect = 1.500e-13 Identity = 67/229 (29.26%), Postives = 108/229 (47.16%), Query Frame = 0 Query: 110 EKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKD-APVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDMDGK---------LESGQRVQVRITDVDMERNRITLSNLPLLRGKRTRFALNKEENDELAV 329 ++ L L +G E G VK + ++G FVD+G DGL+HI+ +S T V+ PS+ +GD + V+VLN D K +V+L +K DS+ D P+G K ++GTV+++ YGAF+R++D ++GL+ +MD ++ GQ V V I DV ++RI+LS L F + + D++ V Sbjct: 181 DREALLETLEEGKEIEGIVKNLADYGAFVDLGG-VDGLLHITDISWTRVNHPSEKLTIGDKIKVKVLNYDKEKMRVSLGLK-------------------------QLTASPWDSISDRLPIGKK-------------VTGTVSNLTDYGAFVRIEDG-VEGLVHVSEMDWTNANARPSKIVKLGQEVDVVILDVQESKHRISLSMKQALENPWEAFEATQNKGDKIIV 369 The following BLAST results are available for this feature:
BLAST of NO01G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02720 ID=NO01G02720|Name=NO01G02720|organism=Nannochloropsis oceanica|type=gene|length=5897bpback to top protein sequence of NO01G02720.1 >NO01G02720.1-protein ID=NO01G02720.1-protein|Name=NO01G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bpback to top Synonyms
Publications
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