NO01G02720, NO01G02720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO01G02720 vs. NCBI_GenBank
Match: EWM29144.1 (rna binding s1 domain protein [Nannochloropsis gaditana]) HSP 1 Score: 605.9 bits (1561), Expect = 1.300e-169 Identity = 324/410 (79.02%), Postives = 361/410 (88.05%), Query Frame = 0 Query: 153 MSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTE-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDMDGKLESGQRVQVRITDVDMERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPEIYEGADDDAEWEAAFAFKGFDDGAADGVVEEDTGGPEVVFGEEPEEDDEEFSMSSINVFRSPAYKKERGLMADDDEDAEEGFKYGGEAYFPEDDEDEDATLGAFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLSLNLVPSKKQKMSLTMKTVQPMQADAVMSKPRMPIYFSKKLSAVQQVDLLEELEKLVNDDPLALVK 558 MSSTFVSSPSDLAAVGD+VTVRVL+VDA KRQ+ALTMKTE XXXXX D+L+DAPVGDKDVSAF++YDPKKFLSGTVASVQAYGAFIRLDDA++DGLLPTGDMDGKLESGQRVQVRITDVD ERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELP+++EG DDDA+WEAAFAFKGF+DG DG+ EE+ GGPE +FGEEPEEDDEEFSMSSIN FRSPAYKKE+GLMA+D+E+A+EGFKYGGEAYFPEDDE +DA G FTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYL++++VPSK++ +L MK V P Q+DA+++KPRMPIYFSKKLSAVQQV+L+EELE+LVNDDPLALVK Sbjct: 1 MSSTFVSSPSDLAAVGDSVTVRVLSVDADKRQIALTMKTEAEANAPRPTKRTSKRRPADRDDANPSXXXXXQGDGDALRDAPVGDKDVSAFEHYDPKKFLSGTVASVQAYGAFIRLDDADLDGLLPTGDMDGKLESGQRVQVRITDVDTERNRITLSNLPLLRGKRTRFALNKEENDELAVIAARSGLYASELPDVFEGPDDDADWEAAFAFKGFEDG-GDGMAEEEVGGPEALFGEEPEEDDEEFSMSSINAFRSPAYKKEKGLMAEDEEEADEGFKYGGEAYFPEDDEADDAISGTFTKQYDTQIPQLSEDELKALIRKAQGTRRNVTEEWAEEEAEEREYLTVSMVPSKRKNTALMMKQVVPTQSDAILAKPRMPIYFSKKLSAVQQVELMEELERLVNDDPLALVK 409
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_009041734.1 (hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens] >EGB03584.1 hypothetical protein AURANDRAFT_72706 [Aureococcus anophagefferens]) HSP 1 Score: 113.6 bits (283), Expect = 2.000e-21 Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 0 Query: 111 KRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTG--------DMDGKLESGQRVQVRITDVDMERNRITLS 305 K TPL+ L +G E+ GK+ G+ +G FVDIGA+SDGLVHIS++S+++V + + GD VTVR+L +D+ K+Q++L+MK E XXXXXX +++ +Q+ DP +F+SGTV +V +GAF+ + +DGL+ D+ +L G V+VRI DVD+++ + L+ Sbjct: 58 KATPLADLVEGNEYAGKITGLAAYGAFVDIGAQSDGLVHISELSASYVDDVASVVKEGDDVTVRILKIDSGKKQLSLSMKPE--------------------GAEAXXXXXXXXXXXXXXXXEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPG-VDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLA 238
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_005768711.1 (hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516] >EOD16282.1 hypothetical protein EMIHUDRAFT_436544 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 110.2 bits (274), Expect = 2.200e-20 Identity = 77/202 (38.12%), Postives = 107/202 (52.97%), Query Frame = 0 Query: 114 PLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDM-DGKLES-------GQRVQVRITDVDMERNRITLSNLP 308 PL L G+ G V+ ++++G FVDIG SDGL+H+S+M+ TFV +D+ AVGD VTVRV +VD K QVAL+ K XX D+S F + D K+F +GTV S+Q++GAF+ L D +DGLL ++ +G +ES GQ VQVR+ D ++ RI LS P Sbjct: 75 PLDQLEVGSTVEGTVRSVQQYGAFVDIGFASDGLLHVSEMADTFVKDANDMFAVGDAVTVRVKSVDLAKGQVALSNK--------------------------DPNAXXXXXXXXXXXXADLSEFASADEKEFRTGTVRSIQSFGAFVNLKDG-VDGLLHISEIKEGGVESVAAELSEGQEVQVRVVSFD-DKRRIGLSMKP 248
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_005703273.1 (30S ribosomal protein S1 [Galdieria sulphuraria] >EME26753.1 30S ribosomal protein S1 [Galdieria sulphuraria]) HSP 1 Score: 103.6 bits (257), Expect = 2.000e-18 Identity = 70/211 (33.18%), Postives = 104/211 (49.29%), Query Frame = 0 Query: 115 LSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNY----DPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDMDGKLESGQRVQVRITDVDMERNRITLSNLPLLRGKRTRFALNKE 322 +S L G +TG VK + +G FVDIGA GL+HISQMS+ FV+ P+++ ++G VTVRV +D K Q +LTMKT+ D P + V A +++ D +F G V +V +GAF+ +D + DGL+ DM LE +QVR+ +D+ R ITLS P+ + + +E Sbjct: 95 VSDLVIGETYTGIVKNVTNYGAFVDIGANKLGLLHISQMSNRFVNHPNEVVSIGSQVTVRVYKIDVEKDQFSLTMKTQEPRRRR---------------------------NDEP--ENVVEALRSFAEQVDRHEFRKGRVVNVTDFGAFVDIDGPK-DGLVFRADMTDDLEVDDEIQVRVKKIDLSRKFITLSMKPITEYEEENMSFVRE 275
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_002287255.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94698.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 101.7 bits (252), Expect = 7.700e-18 Identity = 82/211 (38.86%), Postives = 118/211 (55.92%), Query Frame = 0 Query: 110 EKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDA--------EMDGLL--------PTGDMDGKLESGQRVQVRITDVDMERNRITLS 305 ++RT L+ L GA VK I +G F+DIGA+SD LVH+S++S FV++ D+ G+ +TVR+++VD K Q+A+TM++E XXXXXXXXXXXXXXXX ++ D + +D KF+ G V S A+GAF+R D A E+DGL+ T ++ G +V VR+ V+ E RI+LS Sbjct: 133 KQRTALADLEIGASVEATVKTITAYGAFLDIGAKSDALVHVSRLSDDFVANVEDVVKAGEKITVRIVSVDTEKNQIAVTMRSEEAEASXXXXXXXXXXXXXXXXDQTSQAASIKAISD-----------KGFDDSKFIDGEVVSTLAFGAFVRFDSAQLGEGLEGEVDGLVHISALAEGRTANVSDVAAVGDKVSVRVRSVEPEAGRISLS 332
BLAST of NO01G02720 vs. NCBI_GenBank
Match: EJK67660.1 (hypothetical protein THAOC_11280 [Thalassiosira oceanica]) HSP 1 Score: 100.9 bits (250), Expect = 1.300e-17 Identity = 70/230 (30.43%), Postives = 113/230 (49.13%), Query Frame = 0 Query: 110 EKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDA-------EMDGLLPTGDM-DGKLES-------GQRVQVRITDVDMERNRITLSNLPLLRGKRTRFALNKEEND 325 + RT L L GAE VK I +G F+DIGA SD L+H+S++S FV++ D+ GD ++VR+++VD K Q+A+TM++ + K A + + +D +KF+ G V S +GAF+R D A E+DGL+ + +G++ + G +VQVRI VD E R++LS + + + +R ++ ND Sbjct: 138 KSRTALGDLEIGAEVKATVKTIASYGAFIDIGAASDALLHVSRLSDDFVANVEDVVKKGDEISVRIMSVDTEKNQIAVTMRS-----PEAEAKAAEGGSTGRPQRRRDRPQRSNGDKAAQAATINALVEKGFDEEKFVEGEVVSSLDFGAFVRFDTAQVGEFEGEVDGLVHISALAEGRVNTVSDIVAVGDKVQVRIRTVDAEAGRVSLSMITKEQEEASRPPRREKNND 362
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_005835743.1 (hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712] >EKX48763.1 hypothetical protein GUITHDRAFT_105392 [Guillardia theta CCMP2712]) HSP 1 Score: 100.9 bits (250), Expect = 1.300e-17 Identity = 67/204 (32.84%), Postives = 103/204 (50.49%), Query Frame = 0 Query: 110 EKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDV-SAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGD--------MDGKLESGQRVQVRITDVDMERNRITLS 305 + + PLS G+ GKV I +G FVDIGA +DGLVH+SQ++ FVS + VGD V VR+ ++A +V+L+M++E + + G ++ F+N+D K+F+ GTVAS+ YGAF+ + + +DGL+ +D L GQ V VRI + D +R R++LS Sbjct: 88 KNKKPLSDYEVGSTVPGKVVSIMPYGAFVDIGATTDGLVHVSQLADEFVSDIESVVKVGDEVQVRITEINADINKVSLSMRSE----------------------NAPSRGERNERRSGGGGRSELPEKFKNFDDKEFIKGTVASLMEYGAFVTIGEG-VDGLVHISQISEERDTKIDKVLTVGQEVNVRIINFDQKRKRLSLS 268
BLAST of NO01G02720 vs. NCBI_GenBank
Match: XP_005705065.1 (30S ribosomal protein S1 [Galdieria sulphuraria] >EME28545.1 30S ribosomal protein S1 [Galdieria sulphuraria]) HSP 1 Score: 97.8 bits (242), Expect = 1.100e-16 Identity = 63/192 (32.81%), Postives = 96/192 (50.00%), Query Frame = 0 Query: 117 ALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDMDGKLESGQRVQVRITDVDMERNRITLSNLPL 309 AL G + G V+ + +G FV+IG+ GL+H+SQ+S F++ P+++ +VG V VRV+ +D KRQ AL+MK+ LK+ + +PK+FL+G V S+ GAF+ + DGLL +M L+ G VQVRIT +++ RN + LS PL Sbjct: 99 ALKIGQVYEGTVEKLMPYGAFVNIGSNLSGLLHVSQISENFLTDPAEMLSVGQAVQVRVIKLDPEKRQFALSMKSPRKRENSRSGRDGSRRRDFSRNYSQRDEELRKELKEFS---------KTANPKEFLNGRVVSITNLGAFVDFGGPK-DGLLFKSEMSRDLQIGDEVQVRITRINLARNYLNLSMKPL 280
BLAST of NO01G02720 vs. NCBI_GenBank
Match: OSX78808.1 (hypothetical protein BU14_0098s0034 [Porphyra umbilicalis]) HSP 1 Score: 95.1 bits (235), Expect = 7.200e-16 Identity = 84/206 (40.78%), Postives = 115/206 (55.83%), Query Frame = 0 Query: 114 PLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLPTGDM-DGK-------LESGQRVQVRITDVDMERNRITLSNLPLLRG 312 P LA+G E+ G VK + ++G FVDIG +DGL+H+S++ FV SD+ VG V V + +D K+ +L M XXXXXXXXXXXXXXXXXXXXX S G DP K ++G V+SV+ +GAFI L+ A DGL+ + +G+ L GQ V VR+ + D+ R R++LS P + G Sbjct: 158 PYEDLAEGNEYDGTVKAVMDYGCFVDIGTTTDGLIHVSKLGRGFVEKVSDVVTVGQAVRVAISAIDTEKKNFSLRMVLPEGEGAPEGEXXXXXXXXXXXXXXXXXXXXXLSKWYTEYGT---------DPSKMVTGKVSSVRDFGAFISLEGAPTDGLVHVSQIQEGRVASVAAVLSEGQEVSVRVVECDVSRKRLSLSMKPFVEG 354
BLAST of NO01G02720 vs. NCBI_GenBank
Match: CEM19614.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 92.4 bits (228), Expect = 4.700e-15 Identity = 61/205 (29.76%), Postives = 98/205 (47.80%), Query Frame = 0 Query: 110 EKRTPLSALAQGAEFTGKVKGIKEFGIFVDIGAESDGLVHISQMSSTFVSSPSDLAAVGDTVTVRVLNVDAVKRQVALTMKTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLKDAPVGDKDVSAFQNYDPKKFLSGTVASVQAYGAFIRLDDAEMDGLLP--------TGDMDGKLESGQRVQVRITDVDMERNRITLSNL 307 E+R P SA G G V I ++G FVDIGA +GL+H+SQ++ +V+ P D+ GD V V+VL+V+ ++++AL+M TE D+ F Y P+ + GTV S+ +GAF+ L +DGL+ G+++ + GQ V VRI +D ++ ++ L+ L Sbjct: 134 EQRKPFSAFKPGDLVDGIVVNIAQYGAFVDIGAVRNGLIHVSQLADHYVADPRDVVKEGDHVRVKVLSVEEDRQRIALSMLTE---------------------------------------SADLKTFDAYPPETWFKGTVVSLAPFGAFVNLAPG-VDGLVHISQLAPEFVGNVNDVVTVGQDVDVRIVKIDFDKQQVALTML 298 The following BLAST results are available for this feature:
BLAST of NO01G02720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO01G02720 ID=NO01G02720|Name=NO01G02720|organism=Nannochloropsis oceanica|type=gene|length=5897bpback to top protein sequence of NO01G02720.1 >NO01G02720.1-protein ID=NO01G02720.1-protein|Name=NO01G02720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bpback to top Synonyms
Publications
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