NO01G02670, NO01G02670 (gene) Nannochloropsis oceanica

Overview
NameNO01G02670
Unique NameNO01G02670
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1754
Alignment locationchr1:688575..690328 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:688575..690328 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO01G02670 vs. NCBI_GenBank
Match: EWM29113.1 (hypothetical protein Naga_100007g98 [Nannochloropsis gaditana])

HSP 1 Score: 232.3 bits (591), Expect = 2.000e-57
Identity = 142/313 (45.37%), Postives = 182/313 (58.15%), Query Frame = 0 
Query:    1 MARNDYESINDTRGAVWGIEAGASENKDLYQADSENPFGRNDVLIHRSASFLAQSDPSRRHFQLWILGPAVTLLVVIXXXXXXXSQSAVPLPASAGSSPV---MPTLGAEGPSSGGRISGMLPSTYAMVDS--SGDTRREGAADSINPTTTPAQKPGSKMNTTTVLSCLEDKCKPFVNQLGKSWDELANINLLRCLVSSAFNKTEAGGCFDNARPSDLRDDLVACAGCNKCIKLKDQAGVDKACAKYNAWAAKQKADAAAPTLQAAVEEESVEDNLVLLQQSP------TADSLASNLPASLKEKFCSQYWCP 303
            M+RN+YE I +T G  WGIE+G   N  LYQ D +     +       ++ L ++    R      LGPAV LL+ I       SQ+      +  SSP     P+LGA GPS   ++     ST     S  S     EG A +++   TP + PG+ MN +TVLSCLE+ C+PF  QLGKSW ELAN+NLLRCL SSAFNKT A  CF +A+PS LRDDLVACAGCN C++L++Q  VD+ACAKYNAWAAK   +      +   E  ++        ++P       ADSLA++LP SLKEKFCSQYWCP
Sbjct:    1 MSRNEYEPIINTPGVSWGIESGMLNNDKLYQKDWDKSCCDSTGARRDDSAHLERA----RRLTWVFLGPAVILLIAIAGTVAFLSQN-----RAVSSSPTRRSFPSLGAFGPSGDSKVLPSDESTPVQGGSATSATFASEGEAQTVS-EGTPLRHPGTGMNASTVLSCLEEMCQPFAEQLGKSWHELANVNLLRCLASSAFNKTTATTCFQSAKPSKLRDDLVACAGCNGCVELRNQTSVDRACAKYNAWAAKHGTETDLTRPEEYQEAAALAAFGKPRAETPGEGRGSDADSLAADLPTSLKEKFCSQYWCP 303
The following BLAST results are available for this feature:
BLAST of NO01G02670 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29113.12.000e-5745.37hypothetical protein Naga_100007g98 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL005nonsL005Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR089ngnoR089Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008065NSK008065Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02670.1NO01G02670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576731gene_258Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g98gene1431Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02670.1NO01G02670.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02670 ID=NO01G02670|Name=NO01G02670|organism=Nannochloropsis oceanica|type=gene|length=1754bp
TGTGTCCCCAAAAGGACATGGGCCGCGGAGTCTCAACGTGCCGTCTGGAC
CTCAACCAACGCTTGGCGGAGCCACACCATGACTTATTTTGTCTCACAAT
TATTCTCGTGCACAAGCCATTCTGTAAAACCTCTCCATGCGGGCCCTGGC
TTGTGCGGGGAGGGGCATCAGGCGTGCAATCAAGAGGGGGGGGAGGGAGG
GAGCACGGCGGGGTTTGATTCATGATGATGTGAGCGAAGAACGCCTTGAC
AACCCTCCACTGTATCCCCAGACACACCATACAGCGCCATGGCTCGCAAC
GACTACGAGTCCATCAATGACACGCGCGGGGCCGTGTGGGGCATTGAAGC
CGGCGCGTCGGAGAACAAGGACCTCTACCAGGCGGACTCCGAAAATCCTT
TTGGAAGGAATGATGTCCTCATTCACCGCAGTGCTTCGTTCCTTGCGCAA
TCCGATCCCTCACGCCGACATTTCCAGTTGTGGATCTTGGGCCCCGCCGT
CACGTTGCTGGTGGTGATTGCCGTAGCGGTGGCCGTGATCTCGCAGAGTG
CCGTTCCTTTGCCTGCTTCCGCGGGTAGCAGCCCCGTAATGCCCACCCTA
GGCGCGGAGGGTCCTTCCTCTGGTGGCCGCATCAGCGGCATGCTTCCTTC
GACTTATGCCATGGTGGACAGCAGCGGGGACACGCGCCGGGAAGGTGCTG
CGGACTCCATCAACCCCACCACGACGCCGGCGCAAAAACCGGGATCCAAG
ATGAATACCACGACCGTGCTTTCCTGCCTTGAGGACAAATGCAAGCCCTT
CGTTAACCAGCTTGGGAAAAGCTGGGATGAATTAGCCAATATCAACCTCT
TGCGCTGCTTGGTTTCTTCTGCGTTTAATAAAACGGAGGCCGGTGGGTGC
TTTGATAACGCGAGGCCTTCGGATCTGAGGGATGATTTGGTGGCGTGCGC
AGGATGCAACAAATGCATCAAGCTCAAGGACCAGGCCGGTGTTGACAAGG
CTTGTGCCAAGTACAACGCGTGGGCGGCCAAGCAGAAAGCTGATGCAGCT
GCCCCTACCTTGCAGGCTGCCGTAGAGGAGGAGAGTGTAGAGGACAACCT
AGTGCTGCTACAGCAGAGTCCTACTGCCGACTCTCTGGCTTCCAACTTGC
CCGCGAGTTTGAAGGAAAAATTCTGTAGCCAGTACTGGTGTCCTTAAAAG
GGAAGGAGGAAAGATGATAGAAATGTGGATGTGGTATATTGAGGAGAAAT
CAAGATGAAACAAGCAAGTAGTCAAACAGCGAGTGTGCCGAGACCCGGAG
ATCTGGCACGTCTCCCTCCTCCCTGGCCTGTGAGTATGTGAAGAATGTAG
TCGGAAGTGGAAGTGAGAAAAAGAGAAGCGGAAGTGTACACAAGGACAGT
TATCAGGAATAGGAAGCCAAGGTAGGGACGGAGTGGGAAGAAATGTCGGA
GAAAGAGAAGAAGCGTGGTGTGTGTGAGAAGAGCGACGAGCTGCCACCAT
CCGGCTTCTTTGTTGTATTCTTCCCTGGTAAACAATAATGACGAAAAGAA
AGGGTGTGGGTTAAGGAGACTGAAAATGTTTGCCTGCGTGCGTGCGTAAT
ACAACCAAAGAGAGGTCCAGATAGGACAGGGGATGGGTTTTGAGTGAAGT
CAAACAAAAGAGGGAATGACAGCAAAGGGGGTATTTAATAATTAATTGGA
CTGAATAACACGACAAAAAGCAAGTGATGCATGGCGACGTGCGCAATATA
CACG
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protein sequence of NO01G02670.1

>NO01G02670.1-protein ID=NO01G02670.1-protein|Name=NO01G02670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MARNDYESINDTRGAVWGIEAGASENKDLYQADSENPFGRNDVLIHRSAS
FLAQSDPSRRHFQLWILGPAVTLLVVIAVAVAVISQSAVPLPASAGSSPV
MPTLGAEGPSSGGRISGMLPSTYAMVDSSGDTRREGAADSINPTTTPAQK
PGSKMNTTTVLSCLEDKCKPFVNQLGKSWDELANINLLRCLVSSAFNKTE
AGGCFDNARPSDLRDDLVACAGCNKCIKLKDQAGVDKACAKYNAWAAKQK
ADAAAPTLQAAVEEESVEDNLVLLQQSPTADSLASNLPASLKEKFCSQYW
CP*
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Synonyms
Publications