NO01G02580, NO01G02580 (gene) Nannochloropsis oceanica

Overview
NameNO01G02580
Unique NameNO01G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2106
Alignment locationchr1:671081..673186 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:671081..673186 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02580 vs. NCBI_GenBank
Match: EWM29176.1 (hypothetical protein Naga_100007g62 [Nannochloropsis gaditana])

HSP 1 Score: 331.3 bits (848), Expect = 6.700e-87
Identity = 175/357 (49.02%), Postives = 213/357 (59.66%), Query Frame = 0 
Query:  108 TRPIKMSGRQSLQQKGAKTEGKYTMGK------ESDALFGEAEVNTSRCVGILFLAHDGVANPSLWEKWRESDPAFASRIRFFVFRNEAISHTSTFANQNDLLLRMRTKWCCSSIVRATVKSLDAILTKDADVEIIYIVSGFDIPIQPPSAFFTTRAVVTEGVPKSVVPFQTVLAFTPGEDAPFKVAKGWGKKNEDVRQSVVCHVQWCGLARDHAQRIVEFPELDRFLDIGNKMSKACCPDEWVLGTILSLQLRGEEGRKMESQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRKPAVTAATATVTXXXXXXXXXXXXXXXXXXDWPVTDQYRAKRQAQSPLVWSDLDTTTQKVL 459
            T P++    +S      K+   + +G+      + +A            VGILFLAHDGV NP LWEKWR SD  FASRIRFFVFRN  ISH S F  + DL LR+RTKWC SSIV AT+KSL A+L  D  V +IYIVSG+DIPIQPPSA FTTR+V+TEGV K+VVPF++V+AFTPGED   K A GWGK+NE +RQS V HVQWCGL R HA+ IV +P+L +   +GNK+S ACCPDEWVLGT L LQLR         Q                               R+  V   TA+ T                  DWP+TDQYR+ RQAQSPL+W D++ T+ K+L
Sbjct:   38 TSPVRPDASRSENCVDGKSHANFDIGRSGTHVEKPNASIDSVPDKDQHSVGILFLAHDGVTNPLLWEKWRASDKVFASRIRFFVFRNTKISHPSFFTTKYDLKLRLRTKWCSSSIVHATIKSLQAVLEGDTSVGMIYIVSGYDIPIQPPSALFTTRSVITEGVFKNVVPFRSVIAFTPGEDMDLKEASGWGKRNEKLRQSAVSHVQWCGLTRGHARLIVAYPDLKQLFKLGNKISSACCPDEWVLGTALLLQLR--------CQATPTKANKCGTNGHDDGKEYWRGAEGVRHSPREADVPTTTASDT---SIPNPSGCLESFDVIDWPITDQYRSGRQAQSPLLWEDMEATSHKLL 383
The following BLAST results are available for this feature:
BLAST of NO01G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29176.16.700e-8749.02hypothetical protein Naga_100007g62 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008101NSK008101Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02580.1NO01G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576699gene_248Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g62gene1459Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02580.1NO01G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02580 ID=NO01G02580|Name=NO01G02580|organism=Nannochloropsis oceanica|type=gene|length=2106bp
ATGTTTTATTTTGCCATTCAGGTGGCCACGACGCACGCGCAAGCGGCAAG
CACATTGGAAGGAGGCCGACCTCACAGTAGCAACCTCACAACCACGGCCA
TTCGCCCTTTCCCAATCACAGGCGGCTGGCGGGCCTGGCGCCGCATCAAC
AGCATGAGCAGCGCCAGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAG
TACCAATTATTATGCCAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGA
AGACGAACGACCAGCAAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGT
CAACAGCAGAGTACTGGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCA
ATCGCTCCAGCAGAAGGGTGCGAAAACGGAAGGAAAATACACAATGGGCA
AAGAGTCAGACGCCCTGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGC
GTGGGCATCCTCTTTCTGGCGCACGATGGGGTTGCCAATCCCTCACTCTG
GGAGAAGTGGCGAGAAAGCGATCCGgtgagtagagcgccggggaaggagt
gggaggggaggctggcttttcaggccctctcacatgctgcacggtgcaag
ccatctcaccatctcacctgcgtcccatctcttcccattattttcagGCG
TTCGCATCCCGCATCAGATTTTTCGTTTTCCGGAACGAAGCCATCAGCCA
CACCAGCACCTTTGCCAACCAAAACGACTTACTTTTGCGCATGCGGACCA
AGTGGTGCTGTTCCAGTATAGTCCGCGCGACTGTCAAGTCCTTGGACGCC
ATATTGACAAAGGACGCAGACGTTGAAATTATTTACATCGTTTCGGGTTT
TGACATTCCGATTCAACCACCTTCGGCTTTCTTTACGACTCGGGCTGTGG
TTACGGAGGGTGTGCCGAAAAGTGTGGTGCCGTTTCAGACCGTTTTGGCT
TTTACGCCTGGGGAGGACGCACCGTTCAAAGgtaggggagagaggaagga
gagaggggggtaggagtgatgttgcataggttgcaggttaatattccttg
gtagcatcttaatcatttttattccgcgcaatggagatagTGGCCAAAGG
TTGGGGCAAGAAGAACGAGGACGTGCGGCAAAGCGTCGTGTGCCACGTGC
AGTGGTGCGGGCTCGCGCGAGATCACGCCCAGCGTATTGTCGAATTTCCG
GAATTGGATCGATTTTTGGACATAGGGAATAAAATGTCGAAAGCATGCTG
TCCGGATGAGTGGGTGCTGGGCACCATCCTCTCTTTGCAACTGCGAGGGG
AGGAGGGGCGAAAGATGGAAAGTCAGCAAGGCAAGAAGGATGAGAACAAG
GACCAGGAGAAGAAGAATTCGGAAGAAGAGGGGGAGGGGAAGGAGGAACC
TTATCCGGAGGAAGGTGACCGCAAGCCTGCAGTTACAGCTGCTACTGCAA
CTGTTACTGCAATCGTCCCACCACCTGCCACTCTTACTGCAACCGTCCCA
CCCGGTGTAACTGACTGGCCTGTCACGGACCAGTACCGAGCCAAGCGGCA
GGCGCAGTCCCCCCTTGTCTGGAGCGATCTCGACACTACCACACAGAAGG
TTTTGTGGGCACCCCCGCAAACATATCGTTCATTTACTCTCGAGAAAGTG
GTGGAGCAGGTGTCGCGAAACGAGGGCAATCTTTTCTTTCGCAAGGTAAG
CCCGTTGACGGAAAAGGAGATCGACAGATTGATCCCTTATCAGGAGGCCA
AGGAAGTCCCCGATGCTGCCGCCACCAACGCAGGTGCAACACCAGCGGTG
GTGGTAGATAAGAGGGGAATGGCTTCCACGGTGGGACAGGGCTCGAGCTG
TACCTCAGCTACCTCGGATTTAGAGGGCGTCGACGACGAAGCCCGCAGCA
GCATGAACAGCAGCCGTGTGCCTACCACCCCTCAGACGCATCTAAGGCTT
CCCGAGCAGGAGGAGGAGGAAGAGGAGGGGAAGAAGGTAGTGACTTTTCG
TGCTGGGGCACTGCCAACATATGGTCATCGTGTCATGGATAGACGAAGGC
GGCGGGGATGCCCGGATGGAGGGGGCAGGGGGGTCTGTTGCGAGGAGTGC
GGGTGA
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protein sequence of NO01G02580.1

>NO01G02580.1-protein ID=NO01G02580.1-protein|Name=NO01G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MFYFAIQVATTHAQAASTLEGGRPHSSNLTTTAIRPFPITGGWRAWRRIN
SMSSASLAAAVDVAIPSTNYYASSTSPTSPPRMKTNDQQALSTTPSRRQR
QQQSTGLTRPIKMSGRQSLQQKGAKTEGKYTMGKESDALFGEAEVNTSRC
VGILFLAHDGVANPSLWEKWRESDPAFASRIRFFVFRNEAISHTSTFANQ
NDLLLRMRTKWCCSSIVRATVKSLDAILTKDADVEIIYIVSGFDIPIQPP
SAFFTTRAVVTEGVPKSVVPFQTVLAFTPGEDAPFKVAKGWGKKNEDVRQ
SVVCHVQWCGLARDHAQRIVEFPELDRFLDIGNKMSKACCPDEWVLGTIL
SLQLRGEEGRKMESQQGKKDENKDQEKKNSEEEGEGKEEPYPEEGDRKPA
VTAATATVTAIVPPPATLTATVPPGVTDWPVTDQYRAKRQAQSPLVWSDL
DTTTQKVLWAPPQTYRSFTLEKVVEQVSRNEGNLFFRKVSPLTEKEIDRL
IPYQEAKEVPDAAATNAGATPAVVVDKRGMASTVGQGSSCTSATSDLEGV
DDEARSSMNSSRVPTTPQTHLRLPEQEEEEEEGKKVVTFRAGALPTYGHR
VMDRRRRRGCPDGGGRGVCCEECG*
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Synonyms
Publications