NO01G02560, NO01G02560 (gene) Nannochloropsis oceanica

Overview
NameNO01G02560
Unique NameNO01G02560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5563
Alignment locationchr1:665659..671221 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:665659..671221 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02560 vs. NCBI_GenBank
Match: EWM29152.1 (hypothetical protein Naga_100007g63 [Nannochloropsis gaditana])

HSP 1 Score: 209.5 bits (532), Expect = 1.900e-50
Identity = 146/333 (43.84%), Postives = 185/333 (55.56%), Query Frame = 0 
Query:   54 SLHLSSPIPTRTASKYGNDLASSSA--DQLAPIISVFISPPPISTGDEPHVFSGHATTSSPXXXXXXXXXXXXXXXXXXVGSRIASFFWNAQEQYYTGKVARRQSQLGSAGRLGRPCCFTLQSITLEGNFPATAQVQAEVIVLFDKAHPYLNSISELPPLRTLPRPALRRGQVNIGGRTDVILLPSVTSSSILNITVLLDGTPVGNVRYPLSEITATLRPTELQLISAGADGENPTRSRSPSSPCTSPLRRHLLSSSPTRSSRYGGNDGSKLIGSGLESLRVRAP-SPSLSQPLQTSSRQAAMGGGRGEARPVGEGPPTLDAVWGEVVFYDNR 384
            +LHL+SP         G D  +S+     LAP I+V +S  P S+  +  +FSG A TSSP                   G R  SFFWN QEQY   K+ARRQS L SAG LGRPC   L SIT++G F +TA++QAEV VL +K H  L  + + PP+RT PR  LR GQ N GG +D+I+LPS+T++S L+ITVLL   P+G V YP++E+TATLRPTEL+L+        P R+ SP SP   PLRR     SPT   R G  + S+  G      R+  P S S      T    AA G          EGPP L  VWG++ FY+NR
Sbjct:   55 ALHLASP-------AIGVDSTNSTPCFSDLAPTIAVSVSTSPPSSTADSLIFSGRAATSSPLPLSPRSNLSDGSSVSSTEG-RDNSFFWNLQEQYNKYKMARRQSLLESAGHLGRPCRLVLHSITVQGAFASTARIQAEVCVLREKPHQGL--VPDAPPVRTPPRSPLRPGQANFGGESDIIILPSITTTSTLSITVLLQDVPIGTVYYPVAEVTATLRPTELRLM--------PGRT-SPRSPSNFPLRRR--KGSPT-LRRTGDTEASECRG------RLSPPHSVSFLSSPPTPQAIAAQGKDTNGGIQAAEGPPRLCTVWGDLTFYNNR 359
The following BLAST results are available for this feature:
BLAST of NO01G02560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM29152.11.900e-5043.84hypothetical protein Naga_100007g63 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008099NSK008099Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02560.3NO01G02560.3-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02560.2NO01G02560.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO01G02560.1NO01G02560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576690gene_247Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100007g63gene1458Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02560.3NO01G02560.3Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02560.2NO01G02560.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO01G02560.1NO01G02560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02560 ID=NO01G02560|Name=NO01G02560|organism=Nannochloropsis oceanica|type=gene|length=5563bp
GCGCCAGGCCCGCCAGCCGCCTGTGATTGGGAAAGGGCGAATGGCCGTGG
TTGTGAGGTTGCTACTGTGAGGTCGGCCTCCTTCCAATGTGCTTGCCGCT
TGCGCGTGCGTCGTGGCCACCTGAATGGCAAAATAAAACATTCATGGCCC
CAAGTCGATACATCTGAGCTCACAGACAAGTGCAACAGATATTGTGGCCC
GAGCGTGGCTAATAAATGCTCTCCCCTTTTAGGTCGTTGCTGGTCAAACG
TGTTGTCATCCTTCAAAGTTTGCGACTAACAGCCTCCGAGACTCATCACT
GCTCATCAACCATCTCATCATCATCACTAACAACGGGCAGCCAGAGCAAC
GGCGGGATCACCATTCTTTTTGCTTCCCTTTGAAATTTGCTACCTTTCAC
CAACAACGACGAACAAACACGCTCACATGCTTATCTCCCCGACCCGAATA
CAGACGCGCACTTCTGACCGTTTTATCACGTGCTGCTGGGACATCCTAGG
CACCAAGCCGTAGAGGACGTGCAAGCAAGTCCACTTGCCGCCTTCATTTT
TGACACGACGACACCTTCATCATGGGCAACACTCCTTCCACGACGTCGCT
CTCCCCTTCTCCTTCGCGGCCCTTGACTGAAGAGTCCAGCAGAGAGGACA
ACAAGGGAGAAGAAAGAGAGGCCGACAGCCCCGTCGGTTCGCCCGTAGCC
TCCCCGCCATCCCCGCAAGGCCGTCCAGTCTCCTTGCACCTGTCTTCACC
CATACCAACGCGTACGGCATCCAAATATGGGAACGATCTTGCCTCGTCGA
GCGCTGATCAACTAGCCCCTATTATATCGGTATTCATCAGCCCTCCTCCT
ATATCTACCGGAGACGAGCCCCACGTCTTCTCGGGTCATGCCACCACCAG
CTCGCCCTCTCCCCCTCCCTCCCCTCGTTCCCAAATCTCGGGGGCCAGCA
GCGTTTCGTCGGTTGGGAGCAGAATCGCCAGCTTCTTTTGGAATGCGCAG
GAGCAGTATTACACCGGCAAGGTAGCCAGGCGGCAGAGCCAGCTGGGGAG
CGCGGGgtgagtacatgagaatgcacgtgggtgcttggagagtgggtggg
gtgggtaaatctgtgcagcttattgaggcctttgaatggaggagacttac
atcccttttccctacactcctccaaccaccattgaatagCCGCCTCGGTC
GCCCCTGCTGCTTCACCCTTCAATCCATCACCCTCGAAGGCAACTTCCCC
GCCACAGCCCAAGTCCAAGCCGAAGTAATCGTCCTCTTCGATAAGGCACA
CCCTTACCTCAACTCCATCTCGGAGCTCCCCCCGCTTCGTACCCTTCCTC
GCCCCGCCCTCCGTCGCGGGCAAGTGAACATTGGGGGGAGAACTGACGTC
ATCCTCCTTCCGTCCGTTACAAGCTCTTCCATCCTGAACATCACTGTCTT
GCTCGATGGCACTCCCGTTGGCAACGTCCGCTACCCCTTATCTGAAATCA
CCGCGACTTTACGGCCGACAGAATTGCAGCTGATCTCGGCAGGAGCTGAT
GGGGAAAATCCTACTCGTTCTCGCTCGCCCTCTTCCCCCTGCACGTCCCC
ATTGCGTCGTCATTTGTTGTCATCGTCTCCAACTAGGTCTTCTCGTTATG
GGGGAAACGACGGCTCCAAGTTAATCGGATCTGGGTTGGAAAGCCTGCGC
GTGAGGGCTCCATCGCCATCTCTATCTCAACCACTGCAGACATCCTCTCG
GCAAGCAGCAATGGGCGGGGGGAGAGGGGAAGCACGGCCAGTAGGGGAAG
GGCCACCGACACTCGATGCTGTATGGGGGGAGGTAGTATTTTACGACAAT
CGAAGGTATAAACTATACGCGGAGGGAACTATACGCGGAGGGAGTTCGAT
GTTGGCCTGAATCTGAGAATTTTAGGTCCTACTCACTTTTATAAGAATTT
TATGAAGAGGGCGATTCACTCTTTTTTCTCTTATACGCACACCCTCACCC
CCATACACATACACATCCTGCAGCTCGGGCGTTGGCTGGGTCGGCTTGAT
AGAGGAAGGCGGCGAGCCTATAAACGAGCAGAGGCTCCTGGTCGTGACCC
CGCATTCATTTTGTTTGATGAAGTCGCCGCATTGCGTATTGGTACGTCTA
GCTTGCTCTTTTTTAATTCTCCTTCACCCTTTCTTTCTTTCTTCTAGTCT
CCTTCTGTTTTCTACGCTCGTGTGTGTTTTGAAGCATGCTTTATCAATCA
GGAAACCCCCTTACTATTTCCTAAACCTTTTTTTGCCATCTGTCACACAA
ACGCACAGGGCCAAGAGGGATACAGCATGACACAGGTCCGACACGTGGAG
CCCAAAGGCCTGCCCCATATACCTGAAGAGGCAGACGGCCTGGACCGCAA
CACGAGAAATGACACCACCACAAATACCTCCCCCACGACCACCAGCAGCA
ATAGTAGCAGTGACAATCGATCACTAGGAAAAGAGCGTGGGCGAGGAGGG
GGTGCAATGGTGACAATCTCGGTTAGTTGTCTGGAGGAACGAGAGCGGGA
CATTCTGTTGTCGGTAGACAGTGAGGAAGACGCGCGTCGGTGGACTCAAC
TGCTGAATAGGGCAGCACATGAGGCGGCGTTTGGAGAGGCTGAAATGAGC
TGAACGGAGTTGGTGATGGTGGTGGTGGAAGAGATGTTCGAGGATGATGA
GGAAAAGAAGGAGCAGAGGCGGGAGGGGGAAGAGGGGAATGTTGGGAATC
ACGATCAGCAGTAGTTTAGTTTGTACTGGTAGTGGTAGCAGCAGCAAGAG
GGTGCATACATGCACTAGGTATGTTGAGATATATGCGAAAGGATCTCTCT
TGTGGATTCTTCCCAATCAAATAAATTGGAGTGAATACAATTGAATATTG
GAATTACAGCACCCTTTTGCCTCTATAATCATGGATTGGATCCCGCTTTT
TACTAGCCGAATGCTGGAACTGCCTTGTTTCCCCTCACATCAACTTCCGT
TTCTGCCGCTGTTGCTGCTGTTGAGGTCGCAGCCATGTTGAGTTTTACCG
CGGAACGGAACCCCTCCAGCAAGAGAGTATAGTCATCAGCAGTCAGTGCC
TCAAGGTCCAAGGAACGAGCAGCCGCGATGAGAGAAAAGGCCCGCGGTAT
CGGTTGTAATTCTCCGGTGCTGCTGTTGTTGCTACCACTGCAACTAACGA
TTGCAGGTACTGCCAGGGAGGAGGCACGACGTCGACGGAGGGTGACTGTG
CCGAAGAGGCCGGGGTGATGGGGATCAGGTGCCGTCCCTTCTCGCACCTC
TGTCACGTTGGAAATGGATAGGGAGGAGAGATTGGAGCGTTTATGACTGT
TGATCCTGTCGGAAGCCCAGAAAATTCGCGAAAAATCCTCGTTGCAGAAG
ATAAGGCGGAGCTTGGGGGAGCCACGACGGCCGTGCTGTTTGTGATGTTG
ATAGTTAGGTGGTGTGAGAGACATTGACGAGAAAAGAGACTGACGATTCA
GCGAGGCGAACAATGCGGGCAAAAAATACAGAAAAGAGGGGCCAAATACG
GCAGAGGTATACTCAATTAGGAGCTAGCCTGAAACTTACCTTGATCACCG
TGATGCCATTGATCAGAAGAGGGACAAGACGCGACAATGCTGCCCGGTGC
TCGGCCATCTCCGCAAAAGAATGTCGTGCCTTGGGCGCCTGTGCCTCATG
CTCCGCTGATGATAGCCGTATCATAGACAGTCCTATTGTTTGAGTACTTG
CCGCTATCGCTGGCCGCATCTCCGAGGATTCCCGCTCTCCCTTTTCGTCA
TAGTGCGAGAAGGACGGGCGAGCAGCTGCGTCCTGCTCAAGGGTACACAG
GTCCGTGGCTCGAAGGAAGGTGAGAATCTTGTCCTTGCATGGTTCCCCAG
ATAGCTTGTGAGCAAGCTCTTTAATGTAATAAGCCAAGCGACTCTGGCGT
GTTTCTAGCGCGCAGGCGAGACCGGCTGTAATGTTGAGGTGGGAATGAAG
CAGTGGAGCGGTGTTAGCATAAGCAAGCAGACCAATGGATGACCAAAATT
TAGCTCAAGCATTCACTGTAATGTACCTTTGGCGAACAGAGAGCGGGGAG
GAAATATTGCTCGTAAATCTTCGTCCTTGATACAATCGTTGAGGGCAGAG
AATTCGCGGAATCGACGGCGTATAATGTAATCCTGGCCTTTGTGCCGCAC
CTGAACTAGATAAACTGTGTACGCCCGTCCGGACACACATGAAACGGAAC
AAGGACCACCGGAGCTGATCAGCCTTCTGCAACTGTTGCCCCTGACCGGG
ATAGCCACCACTTCCTTGCCTACAATGCCCAGGCTAATGCAGTCTTCTCC
CTCAGACTGGCGCGCGATATCTCTTGGCATTAGCTTGCTGCTGGCATGTC
GGTCGGGGACGCCGCACTCGCTGGTCCTTATCAGCTCTATACCTTTGTTT
CTTGTCTGTAGCATCTGTGTTTTGTGCGCGAGTCTGAGGGTGTGCGTGCA
CGACGTATGGAAAAGCACATCTTCTAGCAACGGCTGGAAGAGGAACGGCC
GCCGGCCGTTGAGAGCACGGACCGTTTCAAAGGGAGGGAGGGAGGTTGTT
TTCACTTGCGTCTGTGCGTTGCCTGCTCCGACGCTTTTCAAAAAGTAAAT
GAGGATGGGAACAACATCAAGCTGAGCGGTACTTGTCTTGAGCCGAAGTT
GATTAGGTAAGTCCCGAGGTAGAAGTGTGACTCGTTCTTTGATGCAGGGG
TTTTGGACAGATGAGGCTGAGTGCGTGTCCGTGTGATTGTGGTGCGTGGG
AAGGCTTTTTGAGTGCAGGTTATGATGGTGACTTGTCGTGCTTGCCCGCA
CTGTTGCTTAGTGTAAAAGGAGACATTGGTGGACCGACTCTTCTCTTCGC
AGGCTCTGCTTAAAATCATATGCTACTTCCGACTCATCAAAACATCACAG
CGCCCCTATTTGCTTGCCCACTGAACGTCTTTGATTTAAGTATTTGATCT
CTGACATGAGTGCTCTCTACCACACATACGTCACGACAGAAAGCGAACAC
TTTTCGCAGCTGGTGAGTGAAATACAGGTCGGGGACATTCCTCGGTTCCA
TCCCATTCCAGTACATATGCCCAATCATCCATACATTCTGACTTTTTGGT
TCTTTAAATATGCTGATGTCTATAGGTTATGCACACTATTTCTTCTATCA
TATTTATCATATTTCCCTACAAGGCAAACCCGAAAGAAAATGCGTTCAAC
AAGAGTGCGCCGACGTCTTCCGACGCATCCTTTTTCATCCCTACATTATC
GTTTACCAAAGCAGCCCCAGCAAGTCCAATAACGCCCACACCTTTCTTTC
CACCCCTTCGTGCGATAGCCGATAAGTTGCGGGTGCCCTGACCAAACCGC
TTGCGGAGTTTTTCTTCTTCCGTCGCGGCATCTCTCCAACTGTCCCAGTG
AAGTACAACCACGCCCTTCTCTTCCTCTACTCTTGTCGCACAGCTCTTCT
TTCTCCTTCGATTCTTCGTGCTTAGAGGTTTCTTCTCGTCGTTCTTGTAT
GGAAACTCGAGGC
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protein sequence of NO01G02560.3

>NO01G02560.3-protein ID=NO01G02560.3-protein|Name=NO01G02560.3|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MGNTPSTTSLSPSPSRPLTEESSREDNKGEEREADSPVGSPVASPPSPQG
RPVSLHLSSPIPTRTASKYGNDLASSSADQLAPIISVFISPPPISTGDEP
HVFSGHATTSSPSPPPSPRSQISGASSVSSVGSRIASFFWNAQEQYYTGK
VARRQSQLGSAGRLGRPCCFTLQSITLEGNFPATAQVQAEVIVLFDKAHP
YLNSISELPPLRTLPRPALRRGQVNIGGRTDVILLPSVTSSSILNITVLL
DGTPVGNVRYPLSEITATLRPTELQLISAGADGENPTRSRSPSSPCTSPL
RRHLLSSSPTRSSRYGGNDGSKLIGSGLESLRVRAPSPSLSQPLQTSSRQ
AAMGGGRGEARPVGEGPPTLDAVWGEVVFYDNRRYKLYAEGTIRGGSSML
A*
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protein sequence of NO01G02560.2

>NO01G02560.2-protein ID=NO01G02560.2-protein|Name=NO01G02560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MGNTPSTTSLSPSPSRPLTEESSREDNKGEEREADSPVGSPVASPPSPQG
RPVSLHLSSPIPTRTASKYGNDLASSSADQLAPIISVFISPPPISTGDEP
HVFSGHATTSSPSPPPSPRSQISGASSVSSVGSRIASFFWNAQEQYYTGK
VARRQSQLGSAGRLGRPCCFTLQSITLEGNFPATAQVQAEVIVLFDKAHP
YLNSISELPPLRTLPRPALRRGQVNIGGRTDVILLPSVTSSSILNITVLL
DGTPVGNVRYPLSEITATLRPTELQLISAGADGENPTRSRSPSSPCTSPL
RRHLLSSSPTRSSRYGGNDGSKLIGSGLESLRVRAPSPSLSQPLQTSSRQ
AAMGGGRGEARPVGEGPPTLDAVWGEVVFYDNRRYKLYAEGTIRGGSSML
A*
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protein sequence of NO01G02560.1

>NO01G02560.1-protein ID=NO01G02560.1-protein|Name=NO01G02560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=538bp
MGNTPSTTSLSPSPSRPLTEESSREDNKGEEREADSPVGSPVASPPSPQG
RPVSLHLSSPIPTRTASKYGNDLASSSADQLAPIISVFISPPPISTGDEP
HVFSGHATTSSPSPPPSPRSQISGASSVSSVGSRIASFFWNAQEQYYTGK
VARRQSQLGSAGRLGRPCCFTLQSITLEGNFPATAQVQAEVIVLFDKAHP
YLNSISELPPLRTLPRPALRRGQVNIGGRTDVILLPSVTSSSILNITVLL
DGTPVGNVRYPLSEITATLRPTELQLISAGADGENPTRSRSPSSPCTSPL
RRHLLSSSPTRSSRYGGNDGSKLIGSGLESLRVRAPSPSLSQPLQTSSRQ
AAMGGGRGEARPVGEGPPTLDAVWGEVVFYDNRSSGVGWVGLIEEGGEPI
NEQRLLVVTPHSFCLMKSPHCVLGQEGYSMTQVRHVEPKGLPHIPEEADG
LDRNTRNDTTTNTSPTTTSSNSSSDNRSLGKERGRGGGAMVTISVSCLEE
RERDILLSVDSEEDARRWTQLLNRAAHEAAFGEAEMS*
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Synonyms
Publications