NO01G02550, NO01G02550 (gene) Nannochloropsis oceanica

Overview
NameNO01G02550
Unique NameNO01G02550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1263
Alignment locationchr1:664743..666005 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:664743..666005 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02550 vs. NCBI_GenBank
Match: EWM29159.1 (hypothetical protein Naga_100007g65 [Nannochloropsis gaditana])

HSP 1 Score: 100.9 bits (250), Expect = 7.600e-18
Identity = 107/349 (30.66%), Postives = 150/349 (42.98%), Query Frame = 0 
Query:    2 VGSTPLARHFVRRELRPESMHGMGEPAQ---------GAAAAATAPGPNSKARDTGGLKQRRAHGGEEAMEKMLSRLTSKLQEKRKTFAFGFAVENGISGEESDRDSRPLDDLIRELEVDDSNRHKIEXXXXXXXXXXXXXXXXXXXXXXXXDKGDEYVVMMEEKSADADTNALTKPSTEARSPPRSGDTSQGARADEAGAVNIGPPSKLLS-PPPGLEFPYKNDEKKPLSTK----NRRRKKSCATRVE--------EEKGVVVLHWDSWRDAATEEEKLRKRFGQGTRNLSAIARRGGKKGVGVIGLAGAALVNDNVG---MKKDASEDVGAL---LLNAFSFGFAL 323
            +G + LAR F RRELRP S+HGM +PA          G   A         AR +G  +QR      E  +KML+RL+ KLQEKR+TF FGF ++   +     +   PL+D++R+L+                                  D+ D        K +      +  P + +  P  S  TS          V + P   +       LE P   D+   LS +    +RR  ++ A            +E+   ++H D W +A+TE+EKL+KRFGQGTRNL AI+RR  +KG  VI         D V    M K+    V      + NAFSFGFAL
Sbjct:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLD---------SWNLGTDEQVKKRSKKKEGRKRRDKDRADTSAYRNNSKPSGHQLPGVIPPLSPSDQP--SIHTS----------VQLHPQPVIEGVNEDDLEVP--TDQGLYLSMQPTRASRRDSETSAXXXXXXXXNIDFDEQDARIIHLDHWDEASTEKEKLQKRFGQGTRNLFAISRRNEQKGARVIR-------RDKVVCPLMSKELPSAVSMSNKPVANAFSFGFAL 319
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BLAST of NO01G02550 vs. NCBI_GenBank
Match: EWM29160.1 (hypothetical protein Naga_100007g65 [Nannochloropsis gaditana])

HSP 1 Score: 78.6 bits (192), Expect = 4.000e-11
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 0 
Query:    2 VGSTPLARHFVRRELRPESMHGMGEPAQ---------GAAAAATAPGPNSKARDTGGLKQRRAHGGEEAMEKMLSRLTSKLQEKRKTFAFGFAVENGISGEESDRDSRPLDDLIRELE 111
            +G + LAR F RRELRP S+HGM +PA          G   A         AR +G  +QR      E  +KML+RL+ KLQEKR+TF FGF ++   +     +   PL+D++R+L+
Sbjct:    1 MGKSSLARQFARRELRPNSVHGMEDPANEGTRQRPFGGTCQAHPIRTSTFHARKSGAPEQRSGSHVHEGRDKMLTRLSCKLQEKRRTFTFGFEIDEDAARTRDRKHDPPLEDIVRDLD 118
The following BLAST results are available for this feature:
BLAST of NO01G02550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM29159.17.600e-1830.66hypothetical protein Naga_100007g65 [Nannochlorops... [more]
EWM29160.14.000e-1138.98hypothetical protein Naga_100007g65 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008096NSK008096Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02550.1NO01G02550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100007g65gene1457Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02550.1NO01G02550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02550 ID=NO01G02550|Name=NO01G02550|organism=Nannochloropsis oceanica|type=gene|length=1263bp
ATGGTAGGCAGCACGCCCTTAGCAAGACACTTTGTGCGGCGGGAACTGCG
GCCCGAATCGATGCATGGGATGGGAGAGCCAGCTCAAGGTGCCGCGGCCG
CAGCCACCGCCCCCGGTCCAAACAGTAAAGCACGCGACACGGGGGGCTTG
AAGCAAAGGCGAGCTCACGGTGGGGAAGAGGCCATGGAGAAGATGCTGAG
CCGGCTTACGTCCAAATTGCAGGAGAAGCGCAAGACCTTCGCCTTTGGCT
TTGCGGTCGAAAACGGAATTAGTGGAGAAGAGAGCGACAGAGATAGCCGA
CCACTGGACGACTTGATCCGAGAGCTGGAGGTGGATGACAGCAACCGGCA
CAAAATAGAGCGGAAGAGGAAGGAGAAGAAGAAAAAGGCTCAGAAGCTCG
CGAAGAAGGGGGCAGGCAAAGCGCAGGCAAAAGACAAAGGCGATGAATAT
GTGGTGATGATGGAAGAAAAGTCTGCCGACGCAGACACTAACGCTCTTAC
CAAACCCTCTACTGAGGCACGTTCCCCACCACGTTCAGGAGACACCAGCC
AAGgtatgtatgtgtttgtgtccgggtgtgtttgattcctccagacacct
atcttttcaagttacctacccagtacatgtgagttctcgatgatgagaag
cgaaaacccttaatccattcgcagaaaagcttacagccaccagagttagc
caactcgctggctactgaagcactaatttccttggatgtctgagagaacc
gcacatcttaatttatacaaagtattcacatcaacattgatcaaattagc
tccatgacccgctcctaatttgcctctgtacatactcaacacacaagGCG
CCAGGGCCGACGAAGCTGGAGCCGTCAACATCGGCCCACCAAGCAAACTA
CTCAGCCCGCCACCAGGCCTCGAGTTTCCATACAAGAACGACGAGAAGAA
ACCTCTAAGCACGAAGAATCGAAGGAGAAAGAAGAGCTGTGCGACAAGAG
TAGAGGAAGAGAAGGGCGTGGTTGTACTTCACTGGGACAGTTGGAGAGAT
GCCGCGACGGAAGAAGAAAAACTCCGCAAGCGGTTTGGTCAGGGCACCCG
CAACTTATCGGCTATCGCACGAAGGGGTGGAAAGAAAGGTGTGGGCGTTA
TTGGACTTGCTGGGGCTGCTTTGGTAAACGATAATGTAGGGATGAAAAAG
GATGCGTCGGAAGACGTCGGCGCACTCTTGTTGAACGCATTTTCTTTCGG
GTTTGCCTTGTAG
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protein sequence of NO01G02550.1

>NO01G02550.1-protein ID=NO01G02550.1-protein|Name=NO01G02550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MVGSTPLARHFVRRELRPESMHGMGEPAQGAAAAATAPGPNSKARDTGGL
KQRRAHGGEEAMEKMLSRLTSKLQEKRKTFAFGFAVENGISGEESDRDSR
PLDDLIRELEVDDSNRHKIERKRKEKKKKAQKLAKKGAGKAQAKDKGDEY
VVMMEEKSADADTNALTKPSTEARSPPRSGDTSQGARADEAGAVNIGPPS
KLLSPPPGLEFPYKNDEKKPLSTKNRRRKKSCATRVEEEKGVVVLHWDSW
RDAATEEEKLRKRFGQGTRNLSAIARRGGKKGVGVIGLAGAALVNDNVGM
KKDASEDVGALLLNAFSFGFAL*
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Synonyms
Publications