NO01G02540, NO01G02540 (gene) Nannochloropsis oceanica

Overview
NameNO01G02540
Unique NameNO01G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1494
Alignment locationchr1:662527..664020 -

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Properties
Property NameValue
DescriptionGdsl-like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr1genomechr1:662527..664020 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO01G02540 vs. NCBI_GenBank
Match: XP_005856363.1 (gdsl-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU19998.1 gdsl-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 385.2 bits (988), Expect = 3.100e-103
Identity = 214/382 (56.02%), Postives = 251/382 (65.71%), Query Frame = 0 
Query:    1 MLGFRRQSKRDRGMSIRNLSHEGVEESRNLWHTGGAPARLGKTHKPVVLVMGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKTYGGDIVGVIILGGTNDCLANLNSSTRTLIRLYNPFLKELPPLTEYTKTLHKLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRDFTHVKNE-------NVRARGSSDSLEKSAGTTGRIHGVISISIEENVEVQDGKAHXXXXXXXXXXXXXQPTHSLINYSSHHRYCPSTSALFPSSSCFGNSKHPKPRLRRRLHCIDFNARMKRHLEEVLGHKTRKAFEPDFFNMCFNSGMSLLSGALVKWDTVSAARGLALHNDGVHLNERAI 376
            MLG  R  K +RG SIR L  E +  S N W  G       K  +PVVLVMGDSHTQGMYGA YV++LQA+FP F +VN GRNGEVLESIRRRT   L+ +GGD+VGV+ILGGTNDCLANLN+STR LIRLYNPFL+ELP L+EYTK LH LLA IY+H  SSYIDICCVTPP+IAE P S EN +VDS+C+ IR TVR  TH + E           +G+   +E + G    +   +S S         GK                       +   HRY  +      SS     S  P PR RRRLHC+DFN  MKRHLEEV+  K RKAFEPDFFNMCFNSG+SL+SG+++KWD+VSAARGLALHNDGVH+NERAI
Sbjct:   13 MLGHIR--KCNRGKSIRKLPQEDMGGSGNWWRNGTTALYPCKVRRPVVLVMGDSHTQGMYGANYVEVLQARFPAFRLVNAGRNGEVLESIRRRTIPLLQAFGGDVVGVVILGGTNDCLANLNASTRALIRLYNPFLRELPLLSEYTKILHDLLATIYAHEVSSYIDICCVTPPMIAECPDSLENKLVDSVCDDIRATVRRITHKRREKGVENLVTQEKKGADGRMEVTTGAGVLLPPALSSSELPKTCWPGGKTEERDADDW-------------QHEQGHRYWRARQGHHRSSL---TSSGP-PRPRRRLHCLDFNMHMKRHLEEVIADKPRKAFEPDFFNMCFNSGVSLVSGSVLKWDSVSAARGLALHNDGVHMNERAI 375
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BLAST of NO01G02540 vs. NCBI_GenBank
Match: XP_002949291.1 (hypothetical protein VOLCADRAFT_89592 [Volvox carteri f. nagariensis] >EFJ49784.1 hypothetical protein VOLCADRAFT_89592 [Volvox carteri f. nagariensis])

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-7
Identity = 56/171 (32.75%), Postives = 74/171 (43.27%), Query Frame = 0 
Query:   45 KPVVLVMGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKTYGGDIVGVIILGGTNDCLANLNSSTR--------------TLIRLYNPFLKELPPLT-EYTKTLHKLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRD 201
            KPVVL +GDSHT G+ GA +V  L A  P+   VN G NG   +++  R    +    G + GV +L GTNDCL  L   T               T     + F K+   LT +  + L +  A   S S S  I +  VT P I E      N  VD     IR+   +
Sbjct:    4 KPVVLCLGDSHTLGVCGAPWVPGLAAALPRLRYVNTGVNGTQAKNVHSRLEKLILGVRGKLAGVTLLIGTNDCLLALAQETNDFWGQQHYMLNNGYTGPANVDTFRKQYRELTADIAERLRQRAAA--SGSGSEPIKLMIVTLPPIGEALDDKANKRVDEYNTVIREATAE 172
The following BLAST results are available for this feature:
BLAST of NO01G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
XP_005856363.13.100e-10356.02gdsl-like protein, partial [Nannochloropsis gadita... [more]
XP_002949291.11.900e-732.75hypothetical protein VOLCADRAFT_89592 [Volvox cart... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL002nonsL002Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR047ncniR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR091ngnoR091Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR086ngnoR086Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008095NSK008095Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO01G02540.1NO01G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO01G02540.1NO01G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO01G02540 ID=NO01G02540|Name=NO01G02540|organism=Nannochloropsis oceanica|type=gene|length=1494bp
ATGCTGGGCTTTCGCCGCCAGAGCAAGCGGGACCGCGGTATGTCCATTCG
CAACCTCTCACACGAGGGCGTTGAAGAGAGTAGAAACCTGTGGCACACCG
GGGGGGCTCCGGCTCGTCTGGGTAAGACGCACAAGCCCGTAGTCCTTGTT
ATGGGAGACTCGCATACGCAAGGCATGTACGGGGCCTGTTATGTCAAACT
GCTCCAAGCCAAGTTTCCTAAGTTTCACATCGTCAACGGAGGCCGGAATG
GCGAAGTCCTGGAAAGCATTCGAAGACGTACTGGCTCTTACCTCAAGACG
TATGGTGGTGACATAGTGGGGGTCATTATCCTAGGCGGCACCAACGACTG
TCTCGCCAACCTCAATTCCTCGACACGGACGCTCATTCGTCTATATAACC
CTTTTTTGAAGGAACTCCCACCCCTGACCGAGTACACCAAGACGTTACAC
AAGCTTTTGGCCATGATTTACTCGCATTCGGCCTCTTCTTACATCGATAT
TTGCTGCGTGACCCCGCCAATTATCGCTGAGTTTCCTAGCTCTCCTGAAA
ACGTGGTGGTGGATAGTCTGTGTGAGGCCATCCGGAAGACAGTGCGCGAT
TTCACGCACGTTAAGAACGAGAACGTGCGCGCCCGGGGGTCATCTGACAG
CCTGGAAAAGAGTGCTGGGACAACTGGAAGAATTCATGGGGTGATTAGCA
TCAGCATTGAGGAGAATGTGGAAGTGCAAGATGGCAAAGCTCATAAGCAA
CAGCAGCAGAAGCAGCAGCAACAGCAGTCGCTTCAGCCTACGCATTCCCT
TATCAACTATTCTTCTCACCACAGATACTGCCCTTCCACATCTGCCCTTT
TCCCTTCGTCTTCATGCTTTGGAAACTCCAAGCATCCCAAACCGCGGCTA
CGTCGTCGTTTGCACTGCATCGATTTTAACGCGCGGATGAAACGACATCT
GGAGGAAGTGCTTGGTCATAAAACGCGCAAAGCATTTGAGCCCGACTTTT
TTAATATGTGTTTCAATAGCGGGATGAGCTTGTTAAGCGGGGCTTTGGTG
AAATGGGACACAGTGTCGGCAGCTCGGGGATTGGCGCTGCACAACGACGG
CGTGCACTTGAATGAAAGGGCGATCGAGCCGCTCGTCAACTCATTGAGTG
CCTGGTTGGAAGCACTCCAAGAAGAAATCTACATGCAGCATACCCGGGAG
GCATATGCGTCGGCGTCTTCAGGGGAGCAGCTTTTGTCTTCTTTGGTCTC
TACCTTGAAATTCGCAGAGGAAACTATAAGGGGGGGGGAAGGACGGGAGG
CCGCGATTACAGCTGAACGCGGGAAGAACGGATCGGGAATAGACATTGCA
GAGAGACATGGAGATATTTTAAGCATGGTTGATAGTGATGTTGAGGTCAT
GCCTGAAAATGACACCATTGAGGCCAGTAAGGGGGTTGATATGGCGGGAG
AGGCCAGTTTGGTTAGGCCCGTGATGAGGCGGGCATTGGCGTGA
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protein sequence of NO01G02540.1

>NO01G02540.1-protein ID=NO01G02540.1-protein|Name=NO01G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MLGFRRQSKRDRGMSIRNLSHEGVEESRNLWHTGGAPARLGKTHKPVVLV
MGDSHTQGMYGACYVKLLQAKFPKFHIVNGGRNGEVLESIRRRTGSYLKT
YGGDIVGVIILGGTNDCLANLNSSTRTLIRLYNPFLKELPPLTEYTKTLH
KLLAMIYSHSASSYIDICCVTPPIIAEFPSSPENVVVDSLCEAIRKTVRD
FTHVKNENVRARGSSDSLEKSAGTTGRIHGVISISIEENVEVQDGKAHKQ
QQQKQQQQQSLQPTHSLINYSSHHRYCPSTSALFPSSSCFGNSKHPKPRL
RRRLHCIDFNARMKRHLEEVLGHKTRKAFEPDFFNMCFNSGMSLLSGALV
KWDTVSAARGLALHNDGVHLNERAIEPLVNSLSAWLEALQEEIYMQHTRE
AYASASSGEQLLSSLVSTLKFAEETIRGGEGREAAITAERGKNGSGIDIA
ERHGDILSMVDSDVEVMPENDTIEASKGVDMAGEASLVRPVMRRALA*
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Synonyms
Publications